MS003057 (gene) Bitter gourd (TR) v1

Overview


Name	MS003057
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CASP-like protein
Location	scaffold234: 196200 .. 196855 (-)
RNA-Seq Expression	MS003057
Synteny	MS003057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTCAAGTGGTTCAAGGGTGACTTGTCTCATATTGAGAATAATAACTTTTGTGTTTCTTTTCATCTCCTTCTTCATTCTTGTCACCACTTCCAAAACCGTCATGGGAGTTAGGCTCCATTTCAACCAATTTCATGCCTATAGGTAACAAAATTAAACTATATAATATGCCTAATAAATCTAATTTAATTTTCTTTCTAACCCCTCTTCTATATCTTAAATTGAAAATTTTGAAGGTACGTGCTAGCTACCATCATCATCGGTATCATCTTAAACCTCTTGCAAATCGCATTCTCGCTCTTCAATACCGTTAAAAACGGTAGTGGCACTATTCTATTCGACTTCTTTGGTGATAAGGTGCGTTATCATGAGATTTTTGAGTTGTCAATTCGTACGTAATTTAGTAGGTAAGACATCTATTACATTCTCTAAAGCAAAACATTTGGTTCTTGACAGTTTTTGTCGTACCTTCTAGCGACGGGGATGGCAGCTGGATTTGGTCTTACGGTGGATTTGCAGACAACAGACGCAGATGATGAGTATGGAGAATTCTTTGATAAGGCATATGCAGCATCAGCTCTTCTTTTATTTGCATTCTTTTGTGCTGCAGCTGTGTCTATTCTCTCTTCCTTTGCACTCTCCAACAGAGCT

mRNA sequence

ATGGAAAATTCAAGTGGTTCAAGGGTGACTTGTCTCATATTGAGAATAATAACTTTTGTGTTTCTTTTCATCTCCTTCTTCATTCTTGTCACCACTTCCAAAACCGTCATGGGAGTTAGGCTCCATTTCAACCAATTTCATGCCTATAGGTACGTGCTAGCTACCATCATCATCGGTATCATCTTAAACCTCTTGCAAATCGCATTCTCGCTCTTCAATACCGTTAAAAACGGTAGTGGCACTATTCTATTCGACTTCTTTGGTGATAAGTTTTTGTCGTACCTTCTAGCGACGGGGATGGCAGCTGGATTTGGTCTTACGGTGGATTTGCAGACAACAGACGCAGATGATGAGTATGGAGAATTCTTTGATAAGGCATATGCAGCATCAGCTCTTCTTTTATTTGCATTCTTTTGTGCTGCAGCTGTGTCTATTCTCTCTTCCTTTGCACTCTCCAACAGAGCT

Coding sequence (CDS)

ATGGAAAATTCAAGTGGTTCAAGGGTGACTTGTCTCATATTGAGAATAATAACTTTTGTGTTTCTTTTCATCTCCTTCTTCATTCTTGTCACCACTTCCAAAACCGTCATGGGAGTTAGGCTCCATTTCAACCAATTTCATGCCTATAGGTACGTGCTAGCTACCATCATCATCGGTATCATCTTAAACCTCTTGCAAATCGCATTCTCGCTCTTCAATACCGTTAAAAACGGTAGTGGCACTATTCTATTCGACTTCTTTGGTGATAAGTTTTTGTCGTACCTTCTAGCGACGGGGATGGCAGCTGGATTTGGTCTTACGGTGGATTTGCAGACAACAGACGCAGATGATGAGTATGGAGAATTCTTTGATAAGGCATATGCAGCATCAGCTCTTCTTTTATTTGCATTCTTTTGTGCTGCAGCTGTGTCTATTCTCTCTTCCTTTGCACTCTCCAACAGAGCT

Protein sequence

MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGIILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA

Homology

[Close]

BLAST of MS003057 vs. NCBI nr
Match: XP_022134358.1 (CASP-like protein 4D1 [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI
Sbjct: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG
Sbjct: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 156
           EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA
Sbjct: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 155

[Close]

BLAST of MS003057 vs. NCBI nr
Match: XP_022992767.1 (CASP-like protein 4D1 [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 2.2e-60
Identity = 129/154 (83.77%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSG+RVTCLILRI+TFVFLFISFF+LVTTS+TV  V+ HFN FH YRYVLATIIIGI
Sbjct: 1   MENSSGARVTCLILRILTFVFLFISFFVLVTTSQTVESVKFHFNNFHTYRYVLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSLFN VK  +GTILFDFFGDKFLSYLLATG AAGFGL+VDLQT D DD +G
Sbjct: 61  VFNLLQIAFSLFNIVKGATGTILFDFFGDKFLSYLLATGTAAGFGLSVDLQTLDPDDYFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            FFDKAYAASALLLFAFFC+AAVSILSSFALS R
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSILSSFALSKR 154

[Close]

BLAST of MS003057 vs. NCBI nr
Match: XP_023549516.1 (CASP-like protein 4D1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 3.7e-60
Identity = 128/154 (83.12%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSG+RVTCLILRI+TFVFLFISFF+LVTTS+TV  V+ HFN FH YRYVLATIIIGI
Sbjct: 1   MENSSGARVTCLILRILTFVFLFISFFVLVTTSQTVESVKFHFNNFHTYRYVLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSLFN VK  +GTILFDFFGDKFLSYLLATG AAGFGL+VDLQT D DD +G
Sbjct: 61  VFNLLQIAFSLFNIVKGATGTILFDFFGDKFLSYLLATGTAAGFGLSVDLQTLDPDDYFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            FFDKAYAASALLLFAFFC+AAVSI+SSFALS R
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSIISSFALSKR 154

[Close]

BLAST of MS003057 vs. NCBI nr
Match: XP_022939492.1 (CASP-like protein 4D1 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 9.1e-59
Identity = 125/154 (81.17%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           ME+SSG+RVTCLILRI+TFVFLFISFF+LVTTS+TV  V+ HFN FH YRYVLATIIIG+
Sbjct: 1   MESSSGARVTCLILRILTFVFLFISFFVLVTTSQTVESVKFHFNNFHTYRYVLATIIIGV 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSL N VK  +GTILFDFFGDKFLSYLLATG AAGFGL+VDLQT D DD +G
Sbjct: 61  VFNLLQIAFSLLNIVKGATGTILFDFFGDKFLSYLLATGTAAGFGLSVDLQTLDPDDYFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            FFDKAYAASALLLFAFFC+AAVSI+SSFALS R
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSIISSFALSKR 154

[Close]

BLAST of MS003057 vs. NCBI nr
Match: XP_038877616.1 (CASP-like protein 4D1 [Benincasa hispida])

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 125/155 (80.65%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSGSRVT LILRI+TFVFLFISFFIL+TTS+TV  V+LHFN +HA+RY+LATIIIGI
Sbjct: 1   MENSSGSRVTSLILRILTFVFLFISFFILITTSQTVQSVKLHFNYYHAFRYMLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSLFN VKNG+ TILFDFFGDKFLSYLL TG AAGFGL+VDL+  D DD +G
Sbjct: 61  VFNLLQIAFSLFNIVKNGNSTILFDFFGDKFLSYLLGTGTAAGFGLSVDLKKIDPDDFFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 156
            FFDKAYAAS LLLFAFFC+AAVSILSSFALS R+
Sbjct: 121 SFFDKAYAASTLLLFAFFCSAAVSILSSFALSKRS 155

[Close]

BLAST of MS003057 vs. ExPASy Swiss-Prot
Match: B9SXY8 (CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-27
Identity = 72/158 (45.57%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 4   SSGSRVTCLILRIITFVFLFISFFILVTTSKT----VMGVRLHFNQFHAYRYVLATIIIG 63
           S  SR+  LILRI+TF+FL  S  IL T + T    ++ V++HF   +AYRY+LATI+IG
Sbjct: 7   SLASRMAALILRILTFIFLIASLVILTTNTATLELDLVEVKVHFKDVYAYRYMLATIVIG 66

Query: 64  IILNLLQIAFSLF-----NTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTT- 123
           +   +LQIAF+L+     N + +G G + FDFFGDK +SY+L TG AAGF  T D++   
Sbjct: 67  LAYTVLQIAFTLYYVATGNRMMSGDGNLAFDFFGDKVISYILVTGAAAGFASTKDIKPVF 126

Query: 124 DADDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFAL 152
               ++  F +K YA+++LLL  F C A +S+ SS+AL
Sbjct: 127 SGSGDFDAFINKGYASASLLLIGFVCTAVLSVFSSYAL 164

[Close]

BLAST of MS003057 vs. ExPASy Swiss-Prot
Match: C6T1Z6 (CASP-like protein 4D1 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 75/159 (47.17%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 3   NSSGSRVTCLILRIITFVFLFISFFILVTTSKT--VMGVRLHFNQFHAYRYVLATIIIGI 62
           +S+GSR   L+LR++TFVFL I+  ++    +T    GV + FN  +AYRY+++TIIIG 
Sbjct: 13  SSTGSRTVLLLLRVLTFVFLLIALILIAIVKQTDDETGVEIKFNDIYAYRYMISTIIIGF 72

Query: 63  ILNLLQIAFSLF-----NTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDA 122
             NLLQ+A S+F     N V +G G  LFDFFGDK +SYLL +G AAGFG+TV+L     
Sbjct: 73  AYNLLQMALSIFTVVSGNRVLSGDGGYLFDFFGDKIISYLLISGSAAGFGVTVELGRGVP 132

Query: 123 DDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            +    F DKA A+++LLL AF   A  S  +SFAL  +
Sbjct: 133 SN---SFMDKANASASLLLIAFLFTAVASTFTSFALPKK 168

[Close]

BLAST of MS003057 vs. ExPASy Swiss-Prot
Match: A1XGB4 (CASP-like protein PIMP1 OS=Capsicum annuum OX=4072 GN=PIMP1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-26
Identity = 72/151 (47.68%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 12  LILRIITFVFLFISFFILVTTSKTVM----GVRLHFNQFHAYRYVLATIIIGIILNLLQI 71
           LI+RI+T + L ISF ++ T ++TV      V++ F  F+AYRY++AT+IIG+   LLQI
Sbjct: 15  LIVRILTLICLLISFIVIATNNQTVSTVAGDVKIKFKDFYAYRYLIATVIIGMAYTLLQI 74

Query: 72  AFSL-FNTVKN---GSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYGEFF 131
           AFS+   T  N   G G +LFDF+GDKF+SY L TG AA FG+T DL+  +  D Y +F 
Sbjct: 75  AFSISLLTTGNRIGGEGFLLFDFYGDKFISYFLVTGAAASFGMTQDLKQLEGSDNYSKFL 134

Query: 132 DKAYAASALLLFAFFCAAAVSILSSFALSNR 155
           + + AA++L L  FF A A SI SS+ L  R
Sbjct: 135 NTSNAAASLCLIGFFFAVASSIFSSYNLPKR 165

[Close]

BLAST of MS003057 vs. ExPASy Swiss-Prot
Match: Q56X75 (CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 8   RVTCLILRIITFVFLFISFFILVTTSKTVM----GVRLHFNQFHAYRYVLATIIIGIILN 67
           +V  L+LR++T VFL I+  IL T S T++     ++ HF   +AYRY+L+  +IG++  
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIVSQGSALKFHFKDVYAYRYMLSAAVIGLVYA 73

Query: 68  LLQIAFSL--FNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTT-------D 127
           ++Q+ F++  F T          DF+GDK +SYL+ATG AAGFG+T DL+ T       D
Sbjct: 74  VIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVALD 133

Query: 128 ADDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
           + D   +FF K YA+++LLLFAF C A +S+ SSFA++ R
Sbjct: 134 STDPVDKFFSKGYASASLLLFAFICLAVLSVFSSFAMAKR 173

[Close]

BLAST of MS003057 vs. ExPASy Swiss-Prot
Match: B9NBE5 (CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 67/158 (42.41%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 7   SRVTCLILRIITFVFLFISFFILVTTSKTV-MGV---RLHFNQFHAYRYVLATIIIGIIL 66
           SR+T L LR++TF FL +S  I+ T + T+ +G+   ++    F++YRY+LA I  G+  
Sbjct: 19  SRMTALFLRVLTFAFLMVSLVIMTTNTGTIEIGIDEFKVRSKDFYSYRYMLAAIAFGLTY 78

Query: 67  NLLQIAFSLFNTVK------NGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDAD 126
            +LQIA +L +  K      +G G ++FDF+GDK +SY+LATG AA FG T +L+T  A 
Sbjct: 79  TILQIALTLNHISKRNGAQTSGDGNLVFDFYGDKVVSYILATGAAAAFGATKELKTQLAG 138

Query: 127 DEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
               +FF+K YA+++LLL  F C A +S+ SS+AL  +
Sbjct: 139 LGGDKFFNKGYASASLLLLGFVCTAILSVFSSYALPKK 176

[Close]

BLAST of MS003057 vs. ExPASy TrEMBL
Match: A0A6J1C1S4 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006638 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI
Sbjct: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG
Sbjct: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 156
           EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA
Sbjct: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 155

[Close]

BLAST of MS003057 vs. ExPASy TrEMBL
Match: A0A6J1JQU5 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489006 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 129/154 (83.77%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSG+RVTCLILRI+TFVFLFISFF+LVTTS+TV  V+ HFN FH YRYVLATIIIGI
Sbjct: 1   MENSSGARVTCLILRILTFVFLFISFFVLVTTSQTVESVKFHFNNFHTYRYVLATIIIGI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSLFN VK  +GTILFDFFGDKFLSYLLATG AAGFGL+VDLQT D DD +G
Sbjct: 61  VFNLLQIAFSLFNIVKGATGTILFDFFGDKFLSYLLATGTAAGFGLSVDLQTLDPDDYFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            FFDKAYAASALLLFAFFC+AAVSILSSFALS R
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSILSSFALSKR 154

[Close]

BLAST of MS003057 vs. ExPASy TrEMBL
Match: A0A6J1FGY1 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111445381 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.4e-59
Identity = 125/154 (81.17%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           ME+SSG+RVTCLILRI+TFVFLFISFF+LVTTS+TV  V+ HFN FH YRYVLATIIIG+
Sbjct: 1   MESSSGARVTCLILRILTFVFLFISFFVLVTTSQTVESVKFHFNNFHTYRYVLATIIIGV 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSL N VK  +GTILFDFFGDKFLSYLLATG AAGFGL+VDLQT D DD +G
Sbjct: 61  VFNLLQIAFSLLNIVKGATGTILFDFFGDKFLSYLLATGTAAGFGLSVDLQTLDPDDYFG 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
            FFDKAYAASALLLFAFFC+AAVSI+SSFALS R
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSIISSFALSKR 154

[Close]

BLAST of MS003057 vs. ExPASy TrEMBL
Match: A0A1S3C9H1 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498162 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           MENSSGSRVT LILRI+TFVFLFISFFIL+TTS+TV   +LHFN +H +RY+LATIIIG+
Sbjct: 1   MENSSGSRVTSLILRILTFVFLFISFFILITTSQTVRPYKLHFNSYHGFRYMLATIIIGL 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYG 120
           + NLLQIAFSLFN VKNG GTILFDFFGDKFLSYLLATG AAGFG+ VDL+  D DD + 
Sbjct: 61  VFNLLQIAFSLFNIVKNGDGTILFDFFGDKFLSYLLATGAAAGFGVGVDLKKKDPDDLFR 120

Query: 121 EFFDKAYAASALLLFAFFCAAAVSILSSFALSNRA 156
            FFDKAYAASALLLFAFFC+AAVSILSSFALS R+
Sbjct: 121 TFFDKAYAASALLLFAFFCSAAVSILSSFALSKRS 155

[Close]

BLAST of MS003057 vs. ExPASy TrEMBL
Match: A0A6J1FG26 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111445380 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 122/155 (78.71%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MENSSGSRVTCLILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGI 60
           ME SS SRVTCL+LRI+TFVFLFISFFIL+TTS+TV  ++ HFN FH YRYVLATII+ I
Sbjct: 1   METSSASRVTCLVLRILTFVFLFISFFILITTSQTVQSIKFHFNDFHTYRYVLATIIVEI 60

Query: 61  ILNLLQIAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQ-TTDADDEY 120
           + NLLQIAFSLFN VKN +GTILFDFFGDKFLSYLLAT  AAGFG++VDLQ T D +D +
Sbjct: 61  VFNLLQIAFSLFNIVKNRNGTILFDFFGDKFLSYLLATSTAAGFGVSVDLQRTKDPEDLF 120

Query: 121 GEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
           G FFDKAYAASALLLFAFFC+AAVSILSSFALS R
Sbjct: 121 GTFFDKAYAASALLLFAFFCSAAVSILSSFALSKR 155

[Close]

BLAST of MS003057 vs. TAIR 10
Match: AT2G39518.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 8   RVTCLILRIITFVFLFISFFILVTTSKTVM----GVRLHFNQFHAYRYVLATIIIGIILN 67
           +V  L+LR++T VFL I+  IL T S T++     ++ HF   +AYRY+L+  +IG++  
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIVSQGSALKFHFKDVYAYRYMLSAAVIGLVYA 73

Query: 68  LLQIAFSL--FNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTT-------D 127
           ++Q+ F++  F T          DF+GDK +SYL+ATG AAGFG+T DL+ T       D
Sbjct: 74  VIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVALD 133

Query: 128 ADDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
           + D   +FF K YA+++LLLFAF C A +S+ SSFA++ R
Sbjct: 134 STDPVDKFFSKGYASASLLLFAFICLAVLSVFSSFAMAKR 173

[Close]

BLAST of MS003057 vs. TAIR 10
Match: AT2G39530.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-23
Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 8   RVTCLILRIITFVFLFISFFILVTTSKTV----MGVRLHFNQFHAYRYVLATIIIGIILN 67
           R   L+LR++T  FL I+  ++ T + T+      ++L FN  +AYRY+L+  +IG++  
Sbjct: 14  RTVLLLLRVLTAAFLLITVVLISTNTVTLEISSTSIKLPFNDVYAYRYMLSAAVIGLVYA 73

Query: 68  LLQ--IAFSLFNTVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTT-------D 127
           ++Q  +  S F T K    T  FDF+GDK +SYLLATG AAGFG++ DL+ T       D
Sbjct: 74  VVQLFLTISQFATGKTHPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDTYIALIEFD 133

Query: 128 ADDEYGEFFDKAYAASALLLFAFFCAAAVSILSSFALSNR 155
           + D   +FF K YA+++LLLFAF   A +S+ SS ALS R
Sbjct: 134 STDPVDKFFSKGYASASLLLFAFVSLAVLSVFSSLALSKR 173

[Close]

BLAST of MS003057 vs. TAIR 10
Match: AT2G38480.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 44.7 bits (104), Expect = 8.0e-05
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 13  ILRIITFVFLFISFFILVTTSKTVMGVRLHFNQFHAYRYVLATIIIGIILNLLQIAFSLF 72
           I R I  +F  I+F I+V+      G   +FN +  YRYVLA  II  +    Q  F+ F
Sbjct: 50  ITRGICLLFSLIAFLIMVSNKH---GYGRNFNDYEEYRYVLAISIISTLYTAWQ-TFAHF 109

Query: 73  N--TVKNGSGTILFDFFGDKFLSYLLATGMAAGFGLTVDLQTTDADDEYGEFFDKAYAAS 132
           +   + +   +IL DF GD+ ++YLL +  ++   LT        + +   F D A +A 
Sbjct: 110 SKREIFDRRTSILVDFSGDQIVAYLLISAASSAIPLT----NIFREGQDNIFTDSAASAI 169

Query: 133 ALLLFAFFCAAAVSILSSFALSNRA 156
           ++ +FAF   A  ++ S + LS  +
Sbjct: 170 SMAIFAFIALALSALFSGYKLSTHS 186

The following BLAST results are available for this feature:

BLAST of MS003057 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134358.1	1.0e-73	100.00	CASP-like protein 4D1 [Momordica charantia]	[more]
XP_022992767.1	2.2e-60	83.77	CASP-like protein 4D1 [Cucurbita maxima]	[more]
XP_023549516.1	3.7e-60	83.12	CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]	[more]
XP_022939492.1	9.1e-59	81.17	CASP-like protein 4D1 [Cucurbita moschata]	[more]
XP_038877616.1	4.5e-58	80.65	CASP-like protein 4D1 [Benincasa hispida]	[more]

BLAST of MS003057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SXY8	2.5e-27	45.57	CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1	[more]
C6T1Z6	1.6e-26	47.17	CASP-like protein 4D1 OS=Glycine max OX=3847 PE=2 SV=1	[more]
A1XGB4	8.0e-26	47.68	CASP-like protein PIMP1 OS=Capsicum annuum OX=4072 GN=PIMP1 PE=2 SV=1	[more]
Q56X75	3.4e-24	42.50	CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1	[more]
B9NBE5	1.7e-23	42.41	CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 S...	[more]

BLAST of MS003057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1S4	4.8e-74	100.00	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006638 PE=3 SV=1	[more]
A0A6J1JQU5	1.0e-60	83.77	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489006 PE=3 SV=1	[more]
A0A6J1FGY1	4.4e-59	81.17	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111445381 PE=3 SV=1	[more]
A0A1S3C9H1	1.2e-56	79.35	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498162 PE=3 SV=1	[more]
A0A6J1FG26	4.5e-56	78.71	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111445380 PE=3 SV=1	[more]

BLAST of MS003057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39518.1	2.4e-25	42.50	Uncharacterised protein family (UPF0497)	[more]
AT2G39530.1	2.9e-23	42.50	Uncharacterised protein family (UPF0497)	[more]
AT2G38480.1	8.0e-05	30.34	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 6..139 e-value: 2.3E-19 score: 69.7
None	No IPR available	PANTHER	PTHR11615:SF148	CASP-LIKE PROTEIN 4D2	coord: 5..154
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 5..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003057.1	MS003057.1	mRNA