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MS003030 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACCACCGCATCAAATTTGAAGGTTGGTGTATTCATTTACTGATCTTTCAGGACCCAATTCTTGTGTCTCATTGTGCTTTAATTCCAGCCGAGGTTGCTTCCTTTCAATGACCTGCTATCACCAGCCTCTTGTTCATTTTCTTCGTGTAGTACCATCATTTGCTCCACCGAGAGAACTTCCCCTGAGGAAAGTAAGATTTGCAACCTTGAGTTTTATGGTTAATTCCAATGCTTAGAGTTGAAGAATGTGGTTTTTTCTTCGATTTCATTACTTGTGCGATGAGAATACGTATTTTGGTACATAATCTGATTGCTTATTCTTGGAATTCGTTAAAATTTATAGGGCTGTGTGGAATCATATGAAAATAGCATGCAAGGTGTTTGTACAAATGTCTGAACCAACTGGACTATTACGGAAGAAGACAGTGTCGCCCAGAAATTCTGTTTAGATCTATTTGCGTTTTAGATTCTCCTGAGATTGCATTTTCATTGTCTTTATTCAATCATTATCTGTTATTTTCTTGGTTGAACATCAACTTAGTGAGAAGTGGTCATGGTACCAAGCAAAACGATGGCTTCACTTCTGTTGTTTTTATAGTGGGATTGTTCACTTATTGATGAATTGATTAAGTTCTACTTGGTATTTTTCTTTTCTTTCCATTTAGGTGTTTTTTTTCTCTCTGTTCTCTTGAACTTGGATGTCTTTATTGCCTGTGGTAATATGATGTTGATATTAATATTTAGGCCATTGCTATAGAAGGCCGCTTCTATTGGGAGTTGGAGCACTAGCTACAAGTTTACTCCCTGCAAGTTCCCTCTTTGCCGAAGGTACCGTCTTTGCCCCTAAATCCACGTCTCTTCAATAATTTAATGTTGCATTCCAAATTAATATTGTGATTTGTATGTGCAGAAGTCCCGAAAAATTATCGAGCTTTTGTAGACTCCACAGATGGTTATTCCTATTATTACCCTTCTGACTGGAGGGTAAGAAAATTTCAACAAGTAGAAACATGAGACATATATGTAGGGAACAAAAGAGTATACTAAAACAAATAATTTCTACATGTTCGCTATCTAGGAATTTGATTTTAGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTTAAGTTTATACCAACTGAGAAAAAGGATATCCATGAAGAAGGTCCGATAGAAGAGGTAACAGAATCTTCGATTCAGATCATATTGATATTCTGAAGAGAAGCTTGAATAATTGAACTTGACTGGAGCAGGTTGTTAACTTTTTGGTAAATCACCGTTATGCTGCACCAAATCAACAAGCTACCATATATGACATGAAGGAGGTTTGCATCTTTCTCAGTCTCTCCACATCAATATTTCCATATAATATTATCCTGAGGTCTGTTTCTGGACATCTGCTTGATTTTTTATTTACCTGTTTCAGCGAACGATTGATGGTAAAATTTATTATACTTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGGACCTCCTTTGCAACTATAGCAATTGGAAACGGTAAGCTCATATTCTGTACCATTTGAATTTAGGGTCCTTCCTTTCATTGATTTTTCAGCTCTAACTCCCATACTTCTTGATCATAGGATAATTTTTTACCCAAAATGTTAAAGAATATCTAAGTGAACTATTCAGTTCAGAAAGAGATATAAGTGGAAAAACTTTCAAATCAACGTTGACCAAACTCATTTGATCTAGTTGTATTCTGCTATCTTAAAATAAATTCTTATCTAGTCTATATTTTCTGGAATCGCTACGGTTTGTTTTGAGTTAAAGTTCTCAAATTCGAGCTGAACTCTTGCTCTTGTATATTTAGATGAGTGGTACAAGAACAAGGTAACTTCCAATTGTTAAAACAACTAGTTAAGATATTATTTACCTCTCTAAAAGTAATCCCGTTGCTTGTAATACGCATGCAGGTAGATACTATACCTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTACCGCAACATGCTTAAAGTGGTTGCAGACTCATTCAGGGTGTTGGATATA ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACCACCGCATCAAATTTGAAGCCGAGGTTGCTTCCTTTCAATGACCTGCTATCACCAGCCTCTTGTTCATTTTCTTCGTGTAGTACCATCATTTGCTCCACCGAGAGAACTTCCCCTGAGGAAAAAGTCCCGAAAAATTATCGAGCTTTTGTAGACTCCACAGATGGTTATTCCTATTATTACCCTTCTGACTGGAGGGAATTTGATTTTAGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTTAAGTTTATACCAACTGAGAAAAAGGATATCCATGAAGAAGGTCCGATAGAAGAGGTTGTTAACTTTTTGGTAAATCACCGTTATGCTGCACCAAATCAACAAGCTACCATATATGACATGAAGGAGCGAACGATTGATGGTAAAATTTATTATACTTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGGACCTCCTTTGCAACTATAGCAATTGGAAACGGTAGATACTATACCTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTACCGCAACATGCTTAAAGTGGTTGCAGACTCATTCAGGGTGTTGGATATA ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACCACCGCATCAAATTTGAAGCCGAGGTTGCTTCCTTTCAATGACCTGCTATCACCAGCCTCTTGTTCATTTTCTTCGTGTAGTACCATCATTTGCTCCACCGAGAGAACTTCCCCTGAGGAAAAAGTCCCGAAAAATTATCGAGCTTTTGTAGACTCCACAGATGGTTATTCCTATTATTACCCTTCTGACTGGAGGGAATTTGATTTTAGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTTAAGTTTATACCAACTGAGAAAAAGGATATCCATGAAGAAGGTCCGATAGAAGAGGTTGTTAACTTTTTGGTAAATCACCGTTATGCTGCACCAAATCAACAAGCTACCATATATGACATGAAGGAGCGAACGATTGATGGTAAAATTTATTATACTTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGGACCTCCTTTGCAACTATAGCAATTGGAAACGGTAGATACTATACCTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTACCGCAACATGCTTAAAGTGGTTGCAGACTCATTCAGGGTGTTGGATATA MAVSTSCLSWVPTTASNLKPRLLPFNDLLSPASCSFSSCSTIICSTERTSPEEKVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPIEEVVNFLVNHRYAAPNQQATIYDMKERTIDGKIYYTFEYKLSSRAYSRTSFATIAIGNGRYYTLVVGANDRRWRRYRNMLKVVADSFRVLDI Homology
BLAST of MS003030 vs. NCBI nr
Match: XP_022133531.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic [Momordica charantia]) HSP 1 Score: 408.7 bits (1049), Expect = 3.1e-110 Identity = 207/237 (87.34%), Postives = 209/237 (88.19%), Query Frame = 0
BLAST of MS003030 vs. NCBI nr
Match: XP_022953456.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97 Identity = 187/236 (79.24%), Postives = 199/236 (84.32%), Query Frame = 0
BLAST of MS003030 vs. NCBI nr
Match: XP_022953447.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita moschata] >KAG6602355.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033035.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97 Identity = 187/237 (78.90%), Postives = 199/237 (83.97%), Query Frame = 0
BLAST of MS003030 vs. NCBI nr
Match: XP_022990449.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97 Identity = 186/237 (78.48%), Postives = 199/237 (83.97%), Query Frame = 0
BLAST of MS003030 vs. NCBI nr
Match: XP_023534746.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97 Identity = 186/237 (78.48%), Postives = 199/237 (83.97%), Query Frame = 0
BLAST of MS003030 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2) HSP 1 Score: 247.7 bits (631), Expect = 1.2e-64 Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 0
BLAST of MS003030 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 3.6e-29 Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 0
BLAST of MS003030 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 5.6e-06 Identity = 43/176 (24.43%), Postives = 74/176 (42.05%), Query Frame = 0
BLAST of MS003030 vs. ExPASy TrEMBL
Match: A0A6J1BVD2 (photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006093 PE=4 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 1.5e-110 Identity = 207/237 (87.34%), Postives = 209/237 (88.19%), Query Frame = 0
BLAST of MS003030 vs. ExPASy TrEMBL
Match: A0A6J1GN93 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 6.5e-98 Identity = 187/237 (78.90%), Postives = 199/237 (83.97%), Query Frame = 0
BLAST of MS003030 vs. ExPASy TrEMBL
Match: A0A6J1GN22 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 6.5e-98 Identity = 187/236 (79.24%), Postives = 199/236 (84.32%), Query Frame = 0
BLAST of MS003030 vs. ExPASy TrEMBL
Match: A0A6J1JMZ7 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 8.4e-98 Identity = 186/236 (78.81%), Postives = 199/236 (84.32%), Query Frame = 0
BLAST of MS003030 vs. ExPASy TrEMBL
Match: A0A6J1JS28 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 8.4e-98 Identity = 186/237 (78.48%), Postives = 199/237 (83.97%), Query Frame = 0
BLAST of MS003030 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 ) HSP 1 Score: 247.7 bits (631), Expect = 8.4e-66 Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 0
BLAST of MS003030 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 ) HSP 1 Score: 247.7 bits (631), Expect = 8.4e-66 Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 0
BLAST of MS003030 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 ) HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39 Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 0
BLAST of MS003030 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 ) HSP 1 Score: 129.8 bits (325), Expect = 2.6e-30 Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 0
BLAST of MS003030 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein ) HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07 Identity = 43/176 (24.43%), Postives = 74/176 (42.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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