MS003028 (gene) Bitter gourd (TR) v1

Overview
NameMS003028
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionelicitor-responsive protein 1
Locationscaffold234: 8713 .. 9088 (+)
RNA-Seq ExpressionMS003028
SyntenyMS003028
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGTGCAGATGAAGGAGAATGTCCAGTGTGGAATGAGAAATTTACATTCCGAGCAGAGTATCCCGGAACAGGCGACGGTTTCAAGCTCATCCTCAGAATCATGGTCCATGACACCTCTTCTGATGATTTCATTGGCCAAGCCTCGTAAGATCTTTGATCTTCTTCCATGAAATTGAGTTATTGATGGCAACATTGCATTAGAAAGAAGTTCCAAATGAATGAGTATTGTATTGCAGGGTATATGTGGAAGATTTATTAGCTGTGGGAGTCCAAAATGGCAAATCGGAGTTACGGGCTCAAAAGTATAGCGTTGTTGGTGCTGATCTGAACTACTGTGGAGAATTCAAGTGGGAGCGACCTTCACCCAGAAGGTA

mRNA sequence

ATTGGTGCAGATGAAGGAGAATGTCCAGTGTGGAATGAGAAATTTACATTCCGAGCAGAGTATCCCGGAACAGGCGACGGTTTCAAGCTCATCCTCAGAATCATGGTCCATGACACCTCTTCTGATGATTTCATTGGCCAAGCCTCGGTATATGTGGAAGATTTATTAGCTGTGGGAGTCCAAAATGGCAAATCGGAGTTACGGGCTCAAAAGTATAGCGTTGTTGGTGCTGATCTGAACTACTGTGGAGAACAAGTGGGAGCGACCTTCACCCAGAAGGTA

Coding sequence (CDS)

ATTGGTGCAGATGAAGGAGAATGTCCAGTGTGGAATGAGAAATTTACATTCCGAGCAGAGTATCCCGGAACAGGCGACGGTTTCAAGCTCATCCTCAGAATCATGGTCCATGACACCTCTTCTGATGATTTCATTGGCCAAGCCTCGGTATATGTGGAAGATTTATTAGCTGTGGGAGTCCAAAATGGCAAATCGGAGTTACGGGCTCAAAAGTATAGCGTTGTTGGTGCTGATCTGAACTACTGTGGAGAACAAGTGGGAGCGACCTTCACCCAGAAGGTA

Protein sequence

IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDTSSDDFIGQASVYVEDLLAVGVQNGKSELRAQKYSVVGADLNYCGEQVGATFTQKV
Homology
BLAST of MS003028 vs. NCBI nr
Match: XP_022134552.1 (elicitor-responsive protein 1 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  DEG  PVWNEKFTFR EYPG GD FKL+L+IM HDT SSDDFIGQAS+YVEDLLAVG
Sbjct: 42  VARDEGASPVWNEKFTFRVEYPGNGDEFKLVLKIMDHDTFSSDDFIGQASIYVEDLLAVG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG+SELRAQKYSVVGADLNYCGE QV  +FTQKV
Sbjct: 102 VENGESELRAQKYSVVGADLNYCGEIQVAVSFTQKV 137

BLAST of MS003028 vs. NCBI nr
Match: XP_022938500.1 (elicitor-responsive protein 1-like [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  DEG CPVWNE FTFRAEYPG+GD FKL+L+IM HD  S+DDFIGQ S+YVEDLLA+G
Sbjct: 42  VARDEGGCPVWNETFTFRAEYPGSGDDFKLVLKIMDHDNFSADDFIGQTSIYVEDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQK 94
            +NG SELRAQKYSVVGA+LNY GE QVG +FTQK
Sbjct: 102 AENGVSELRAQKYSVVGANLNYSGEIQVGVSFTQK 136

BLAST of MS003028 vs. NCBI nr
Match: KAG6578692.1 (16 kDa phloem protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-32
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  DEG  PVWNE FTFRAEYPG+GD FKL+L+IM HD  S+DDFIGQ S+YVEDLLA+G
Sbjct: 42  VARDEGGSPVWNETFTFRAEYPGSGDDFKLVLKIMDHDNFSADDFIGQTSIYVEDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQK 94
            +NG SELRAQKYSVVGADLNY GE QVG +FTQK
Sbjct: 102 AENGVSELRAQKYSVVGADLNYSGEIQVGVSFTQK 136

BLAST of MS003028 vs. NCBI nr
Match: KGN51319.1 (hypothetical protein Csa_008301 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  +EG  PVWNEKFTFRAEYPG+GD FK+ILRIM HDT S+DDFIGQAS+YV+DLLA+G
Sbjct: 42  VAKNEGGSPVWNEKFTFRAEYPGSGDNFKIILRIMDHDTFSADDFIGQASIYVKDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG SEL  QKY VVG DLNY GE QVG TFTQKV
Sbjct: 102 VENGVSELWPQKYRVVGDDLNYNGEIQVGVTFTQKV 137

BLAST of MS003028 vs. NCBI nr
Match: XP_004142763.2 (synaptotagmin-1 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  +EG  PVWNEKFTFRAEYPG+GD FK+ILRIM HDT S+DDFIGQAS+YV+DLLA+G
Sbjct: 42  VAKNEGGSPVWNEKFTFRAEYPGSGDNFKIILRIMDHDTFSADDFIGQASIYVKDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG SEL  QKY VVG DLNY GE QVG TFTQKV
Sbjct: 102 VENGVSELWPQKYRVVGDDLNYNGEIQVGVTFTQKV 137

BLAST of MS003028 vs. ExPASy Swiss-Prot
Match: Q9M2T2 (16 kDa phloem protein 1 OS=Arabidopsis thaliana OX=3702 GN=PP16-1 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-20
Identity = 44/82 (53.66%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 4   DEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVGVQN 63
           D G  P WN+K  +RAE+PG+G  +KLI+++M HDT SSDDFIG+A+V+V++LL +GV+ 
Sbjct: 46  DGGRNPTWNDKLKWRAEFPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEK 105

Query: 64  GKSELRAQKYSVVGADLNYCGE 85
           G +ELR  KY++V +DL++ GE
Sbjct: 106 GTAELRPTKYNIVDSDLSFVGE 127

BLAST of MS003028 vs. ExPASy Swiss-Prot
Match: Q9ZT47 (16 kDa phloem protein 1 OS=Cucurbita maxima OX=3661 GN=PP16-1 PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  + G  P+W+EKF F AEYPG+G  F ++ ++M HD    DD+IG   + V++LLA G
Sbjct: 43  VAKNAGPNPLWDEKFKFLAEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVKNLLAEG 102

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATF 91
           V+ GKSE+  + Y V+   +++ GE +VG +F
Sbjct: 103 VRKGKSEMPPRMYHVLAHKIHFKGEIEVGVSF 134

BLAST of MS003028 vs. ExPASy Swiss-Prot
Match: Q9ZT46 (16 kDa phloem protein 2 OS=Cucurbita maxima OX=3661 GN=PP16-2 PE=1 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-15
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  + G  P+WNEKF F  EYPG+G  F ++ ++M HD    DD+IG   + V++LLA G
Sbjct: 43  VAKNAGPDPIWNEKFKFLVEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVQNLLAEG 102

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQK 94
           V+ G SEL  + Y V+   + + GE +VG  F ++
Sbjct: 103 VRKGWSELPPRMYQVLAHKIYFKGEIEVGVFFQRQ 137

BLAST of MS003028 vs. ExPASy Swiss-Prot
Match: A2WWV5 (Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-14
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  D+G+ P WNE F F+          KL LR+M HDT S DDF+G+A++ V DL+++G
Sbjct: 46  VARDQGKNPSWNEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLG 105

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFT 92
           +++G  E+   K+ VV AD  Y GE +V  TFT
Sbjct: 106 MEHGTWEMSESKHRVVLADKTYHGEIRVSLTFT 138

BLAST of MS003028 vs. ExPASy Swiss-Prot
Match: Q0JHU5 (Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-14
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  D+G+ P WNE F F+          KL LR+M HDT S DDF+G+A++ V DL+++G
Sbjct: 46  VARDQGKNPSWNEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLG 105

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFT 92
           +++G  E+   K+ VV AD  Y GE +V  TFT
Sbjct: 106 MEHGTWEMSESKHRVVLADKTYHGEIRVSLTFT 138

BLAST of MS003028 vs. ExPASy TrEMBL
Match: A0A6J1BZX2 (elicitor-responsive protein 1 OS=Momordica charantia OX=3673 GN=LOC111006769 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.2e-36
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  DEG  PVWNEKFTFR EYPG GD FKL+L+IM HDT SSDDFIGQAS+YVEDLLAVG
Sbjct: 42  VARDEGASPVWNEKFTFRVEYPGNGDEFKLVLKIMDHDTFSSDDFIGQASIYVEDLLAVG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG+SELRAQKYSVVGADLNYCGE QV  +FTQKV
Sbjct: 102 VENGESELRAQKYSVVGADLNYCGEIQVAVSFTQKV 137

BLAST of MS003028 vs. ExPASy TrEMBL
Match: A0A6J1FJZ3 (elicitor-responsive protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444720 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.5e-33
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  DEG CPVWNE FTFRAEYPG+GD FKL+L+IM HD  S+DDFIGQ S+YVEDLLA+G
Sbjct: 42  VARDEGGCPVWNETFTFRAEYPGSGDDFKLVLKIMDHDNFSADDFIGQTSIYVEDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQK 94
            +NG SELRAQKYSVVGA+LNY GE QVG +FTQK
Sbjct: 102 AENGVSELRAQKYSVVGANLNYSGEIQVGVSFTQK 136

BLAST of MS003028 vs. ExPASy TrEMBL
Match: A0A0A0KQY4 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517170 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  +EG  PVWNEKFTFRAEYPG+GD FK+ILRIM HDT S+DDFIGQAS+YV+DLLA+G
Sbjct: 42  VAKNEGGSPVWNEKFTFRAEYPGSGDNFKIILRIMDHDTFSADDFIGQASIYVKDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG SEL  QKY VVG DLNY GE QVG TFTQKV
Sbjct: 102 VENGVSELWPQKYRVVGDDLNYNGEIQVGVTFTQKV 137

BLAST of MS003028 vs. ExPASy TrEMBL
Match: A0A5D3DGQ6 (Elicitor-responsive protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00230 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  +EG  PVWNEKFTF+AEYPGTGD FK+IL+IM HDT S+DDFIGQAS+YV+DLLA+G
Sbjct: 42  VARNEGGSPVWNEKFTFKAEYPGTGDNFKIILKIMDHDTFSADDFIGQASIYVKDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQKV 95
           V+NG SEL  QKY VVG +LNY GE QVG TFTQKV
Sbjct: 102 VENGVSELGPQKYRVVGDNLNYNGEIQVGVTFTQKV 137

BLAST of MS003028 vs. ExPASy TrEMBL
Match: A0A6J1K000 (elicitor-responsive protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488961 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +   EG  PVWNE FTFRAEYPG+GD FKL+L+IM HD  S+DDFIGQ S+YVEDLLA+G
Sbjct: 42  VARGEGGSPVWNETFTFRAEYPGSGDDFKLVLKIMDHDNFSADDFIGQTSIYVEDLLALG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE-QVGATFTQK 94
            +NG SELRAQKYSVVG DLNY GE QVG +FTQK
Sbjct: 102 AENGVSELRAQKYSVVGGDLNYSGEIQVGVSFTQK 136

BLAST of MS003028 vs. TAIR 10
Match: AT3G55470.2 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 44/85 (51.76%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1   IGADEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVG 60
           +  D G  P WN+K  +RAE+PG+G  +KLI+++M HDT SSDDFIG+A+V+V++LL +G
Sbjct: 42  VAKDGGRNPTWNDKLKWRAEFPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMG 101

Query: 61  VQNGKSELRAQKYSVVGADLNYCGE 85
           V+ G +ELR  KY++V +DL++ GE
Sbjct: 102 VEKGTAELRPTKYNIVDSDLSFVGE 126

BLAST of MS003028 vs. TAIR 10
Match: AT3G55470.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 7.5e-22
Identity = 44/82 (53.66%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 4   DEGECPVWNEKFTFRAEYPGTGDGFKLILRIMVHDT-SSDDFIGQASVYVEDLLAVGVQN 63
           D G  P WN+K  +RAE+PG+G  +KLI+++M HDT SSDDFIG+A+V+V++LL +GV+ 
Sbjct: 46  DGGRNPTWNDKLKWRAEFPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEK 105

Query: 64  GKSELRAQKYSVVGADLNYCGE 85
           G +ELR  KY++V +DL++ GE
Sbjct: 106 GTAELRPTKYNIVDSDLSFVGE 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134552.11.9e-3580.21elicitor-responsive protein 1 [Momordica charantia][more]
XP_022938500.12.0e-3274.74elicitor-responsive protein 1-like [Cucurbita moschata][more]
KAG6578692.17.5e-3274.7416 kDa phloem protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN51319.12.8e-3175.00hypothetical protein Csa_008301 [Cucumis sativus][more]
XP_004142763.22.8e-3175.00synaptotagmin-1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9M2T21.1e-2053.6616 kDa phloem protein 1 OS=Arabidopsis thaliana OX=3702 GN=PP16-1 PE=1 SV=1[more]
Q9ZT471.7e-1541.3016 kDa phloem protein 1 OS=Cucurbita maxima OX=3661 GN=PP16-1 PE=1 SV=3[more]
Q9ZT466.6e-1540.0016 kDa phloem protein 2 OS=Cucurbita maxima OX=3661 GN=PP16-2 PE=1 SV=3[more]
A2WWV54.3e-1443.01Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=... [more]
Q0JHU54.3e-1443.01Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 P... [more]
Match NameE-valueIdentityDescription
A0A6J1BZX29.2e-3680.21elicitor-responsive protein 1 OS=Momordica charantia OX=3673 GN=LOC111006769 PE=... [more]
A0A6J1FJZ39.5e-3374.74elicitor-responsive protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444720... [more]
A0A0A0KQY41.4e-3175.00C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517170 PE=4 SV=... [more]
A0A5D3DGQ66.8e-3172.92Elicitor-responsive protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1K0006.8e-3172.63elicitor-responsive protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488961 P... [more]
Match NameE-valueIdentityDescription
AT3G55470.23.4e-2251.76Calcium-dependent lipid-binding (CaLB domain) family protein [more]
AT3G55470.17.5e-2253.66Calcium-dependent lipid-binding (CaLB domain) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 7..61
e-value: 3.6E-7
score: 30.4
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 3..82
e-value: 9.0E-10
score: 40.4
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 7..65
NoneNo IPR availablePANTHERPTHR32246INGRESSION PROTEIN FIC1coord: 5..93
NoneNo IPR availablePANTHERPTHR32246:SF6016 KDA PHLOEM PROTEIN 1coord: 5..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003028.1MS003028.1mRNA