MS003020 (gene) Bitter gourd (TR) v1

Overview
NameMS003020
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationscaffold595_1: 1106583 .. 1107616 (-)
RNA-Seq ExpressionMS003020
SyntenyMS003020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATTTATGGCCGTACGCCAAGAGACTACTATGCGAGATTATCGTCGACGATTCGAAGAAGTGGGCGGGGCAGTCAACGAGGTACCAGCCTTCATCTTGGAGAGTCTATACATCAATGGGTTAAAGGAAGACGTCAGAAAAGAGGTACGGGTTATGAAGCCCAATGGGCTCAAAGCAATCATGGAAATGGCCCAGCTAATCGAGGATAAGAATTCGGCTAGCCTAGTTGTCGCGACCCAAGGGGAAAAAGAGGGGTCGGGAGGATCCACATGTTCACTAAAGACCATTGGGTCATCAAGCGGGTCAGCCCGAACCGTTTCCTTCACTTCTAATCATTCTAATACATCACGAAATATAGAGACATCTAATAAAGGAGGGGTTGCGTCGGCGAGTCTAGGGCATTTCCGAAAGTTGACAGATGTTGAACTACGAGCGAAAAGGGAAAAGGGATTATGTTACTGTTGCGATGAGAAATTTTCACCGGGGCATCAATGCAAGAAGCGGGAGTTGCAAGTCTTGGTGGTTCAGGAGTCGGAAAGTGGTGGAGACGATTTCCAGGACAGGTGGAAACAATCGTGGAAGACCGGGAAAAAGAAGGGGTGGGATTCACCATGCTTTCTTTAAATTCGTTCGTAGGGTTGGCTTCTCCCAAAACGAAGACTCTTAAGGTACGTGGAAAAATTGCAGGGCAAGATGTGATCGTCTTGGTAGATAGCAAGGCTACCCACAATTTTATTGCACTAGAATTGGCTCAGAAGTGTCGGTTGTCGTGCAGTCAAACTAACAGATATGGCGTAATTTTGGGCACGGGTACGGAGGTGATGAGTCATGGGGTTTGCAAGGTCATGGAGCTCGTTTTCCCGAACCTAACCATTGTGCAAGATTTTTTGCCCATTCCTTTGGGAAGTGCTAACGTGATTTTAATGGTACAATGGATGTCAACATCGGGGGATATCACACTGAATCTAAAGAAATTGACATTGAAATTTGGGTTGGGAAAACGACGGGTTCTGTTGCAAGGGGAGCCCAGCCTT

mRNA sequence

CGATTTATGGCCGTACGCCAAGAGACTACTATGCGAGATTATCGTCGACGATTCGAAGAAGTGGGCGGGGCAGTCAACGAGGTACCAGCCTTCATCTTGGAGAGTCTATACATCAATGGGTTAAAGGAAGACGTCAGAAAAGAGGTACGGGTTATGAAGCCCAATGGGCTCAAAGCAATCATGGAAATGGCCCAGCTAATCGAGGATAAGAATTCGGCTAGCCTAGTTGTCGCGACCCAAGGGGAAAAAGAGGGGTCGGGAGGATCCACATGTTCACTAAAGACCATTGGGTCATCAAGCGGGTCAGCCCGAACCGTTTCCTTCACTTCTAATCATTCTAATACATCACGAAATATAGAGACATCTAATAAAGGAGGGGTTGCGTCGGCGAGTCTAGGGCATTTCCGAAAGTTGACAGATGTTGAACTACGAGCGAAAAGGGAAAAGGGATTATGTTACTGTTGCGATGAGAAATTTTCACCGGGGCATCAATGCAAGAAGCGGGAGTTGCAAGTCTTGGTGGTTCAGGAGGGAAAGTGGTGGAGACGATTTCCAGGACAGGTGGAAACAATCGTGGAAGACCGGGAAAAAGAAGGGGTGGGATTCACCATGCTTTCTTTAAATTCGTTCGTAGGGTTGGCTTCTCCCAAAACGAAGACTCTTAAGGTACGTGGAAAAATTGCAGGGCAAGATGTGATCGTCTTGGTAGATAGCAAGGCTACCCACAATTTTATTGCACTAGAATTGGCTCAGAAGTGTCGGTTGTCGTGCAGTCAAACTAACAGATATGGCGTAATTTTGGGCACGGGTACGGAGGTGATGAGTCATGGGGTTTGCAAGGTCATGGAGCTCGTTTTCCCGAACCTAACCATTGTGCAAGATTTTTTGCCCATTCCTTTGGGAAGTGCTAACGTGATTTTAATGGTACAATGGATGTCAACATCGGGGGATATCACACTGAATCTAAAGAAATTGACATTGAAATTTGGGTTGGGAAAACGACGGGTTCTGTTGCAAGGGGAGCCCAGCCTT

Coding sequence (CDS)

CGATTTATGGCCGTACGCCAAGAGACTACTATGCGAGATTATCGTCGACGATTCGAAGAAGTGGGCGGGGCAGTCAACGAGGTACCAGCCTTCATCTTGGAGAGTCTATACATCAATGGGTTAAAGGAAGACGTCAGAAAAGAGGTACGGGTTATGAAGCCCAATGGGCTCAAAGCAATCATGGAAATGGCCCAGCTAATCGAGGATAAGAATTCGGCTAGCCTAGTTGTCGCGACCCAAGGGGAAAAAGAGGGGTCGGGAGGATCCACATGTTCACTAAAGACCATTGGGTCATCAAGCGGGTCAGCCCGAACCGTTTCCTTCACTTCTAATCATTCTAATACATCACGAAATATAGAGACATCTAATAAAGGAGGGGTTGCGTCGGCGAGTCTAGGGCATTTCCGAAAGTTGACAGATGTTGAACTACGAGCGAAAAGGGAAAAGGGATTATGTTACTGTTGCGATGAGAAATTTTCACCGGGGCATCAATGCAAGAAGCGGGAGTTGCAAGTCTTGGTGGTTCAGGAGGGAAAGTGGTGGAGACGATTTCCAGGACAGGTGGAAACAATCGTGGAAGACCGGGAAAAAGAAGGGGTGGGATTCACCATGCTTTCTTTAAATTCGTTCGTAGGGTTGGCTTCTCCCAAAACGAAGACTCTTAAGGTACGTGGAAAAATTGCAGGGCAAGATGTGATCGTCTTGGTAGATAGCAAGGCTACCCACAATTTTATTGCACTAGAATTGGCTCAGAAGTGTCGGTTGTCGTGCAGTCAAACTAACAGATATGGCGTAATTTTGGGCACGGGTACGGAGGTGATGAGTCATGGGGTTTGCAAGGTCATGGAGCTCGTTTTCCCGAACCTAACCATTGTGCAAGATTTTTTGCCCATTCCTTTGGGAAGTGCTAACGTGATTTTAATGGTACAATGGATGTCAACATCGGGGGATATCACACTGAATCTAAAGAAATTGACATTGAAATTTGGGTTGGGAAAACGACGGGTTCTGTTGCAAGGGGAGCCCAGCCTT

Protein sequence

RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAIMEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIETSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKWWRRFPGQVETIVEDREKEGVGFTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIVLVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQDFLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL
Homology
BLAST of MS003020 vs. NCBI nr
Match: XP_024017591.1 (uncharacterized protein LOC112090471 [Morus notabilis])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-61
Identity = 146/352 (41.48%), Postives = 217/352 (61.65%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+++ QETT+R+YRR+FE +   + E+P  +LES ++NGLK +VR EVR+MKPNGL  I
Sbjct: 182 KFLSLHQETTVREYRRQFEMLAALLAEIPEQVLESAFVNGLKPEVRAEVRMMKPNGLGRI 241

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNI- 120
           ME  Q +E++N       TQ     S     S    G    S  +    S  +NTS  + 
Sbjct: 242 MEFTQRVEERNQLVRGPKTQMSSFNSWNRNISASQ-GLGLRSGLSYGGGSRATNTSVAVG 301

Query: 121 ---ETSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQ 180
                S K   +++ +  +R+LTD +++ KREKGLCY CD K+S G++C  RELQVL+V+
Sbjct: 302 CPSGISEKTKESTSGMAPYRRLTDAKIQTKREKGLCYRCDGKYSFGYRCPNRELQVLLVR 361

Query: 181 EGKWWRRFPGQVETIVEDREKEGVG----FTMLSLNSFVGLASPKTKTLKVRGKIAGQDV 240
           E         + E   E  EK  +G       LSLNS VG  SP  KT+K++G + GQ+V
Sbjct: 362 E---------EDEVAEEQEEKAELGADEEVVELSLNSVVGFTSP--KTMKLKGVLRGQEV 421

Query: 241 IVLVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIV 300
            VL+DS A HNFI+++L +K  LS  +T  YGVI+GTG  V   GVC+ + +   ++ +V
Sbjct: 422 AVLIDSGAMHNFISVDLVRKMELSVDKTEDYGVIMGTGLSVKREGVCRGIVISLQDIEVV 481

Query: 301 QDFLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           +DFLP+ L S+++IL +Q + T G++T+N K L++KF +G R+V L+G+P L
Sbjct: 482 EDFLPLELESSDIILGIQCLETLGNMTVNWKNLSIKFMVGNRQVTLKGDPGL 521

BLAST of MS003020 vs. NCBI nr
Match: XP_022848903.1 (uncharacterized protein LOC111371244 [Olea europaea var. sylvestris])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 149/352 (42.33%), Postives = 218/352 (61.93%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+A+RQE T+RDY R FE +   +  VP  ILE  +INGLK  +R EVR++KP GL  I
Sbjct: 183 KFLALRQEGTVRDYGRMFEVLAAPLTTVPEDILEGNFINGLKPLIRAEVRLLKPRGLDLI 242

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSAR------TVSFTSNH-- 120
           ME+AQ +ED+N   LV   QG   G G    +  +     G ++      + S + NH  
Sbjct: 243 MELAQRVEDRN--ELVRQAQG-SYGPGKMRNTSYSPSPDYGPSKPPNLTHSGSLSQNHVA 302

Query: 121 SNTSRNIETSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQV 180
              +R I +S +  +   +   F+KL+DVEL+ KRE+GLCY CDEKF PGH+C+ +EL V
Sbjct: 303 QLNARPIPSSPRNLMVGKAASSFKKLSDVELQLKRERGLCYRCDEKFQPGHKCRNKELHV 362

Query: 181 LVVQEGKWWRRFPGQVETIVEDREKEGVGFTMLSLNSFVGLASPKTKTLKVRGKIAGQDV 240
           LVVQ G+      G V+  V++ E E      LS+NS VGL +P  K++K++G I G  V
Sbjct: 363 LVVQ-GEEEGEELGNVQ--VDEGETEVGEVVELSINSVVGLNAP--KSMKLKGTICGHSV 422

Query: 241 IVLVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIV 300
           IVL+D  ATHNFI+++LA + ++    T+ YG+I+GTG+ V   GVCK + +  P++ +V
Sbjct: 423 IVLIDCGATHNFISVDLAAQLQIPTVPTHGYGIIMGTGSAVRGCGVCKGVVISLPSIEVV 482

Query: 301 QDFLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
            DFLP+ LG  +VIL ++W+ T G + ++   LT+K  +G + V LQG+ SL
Sbjct: 483 DDFLPLKLGCTDVILGMKWLETVGKMQVDWGNLTMKIKVGGQVVTLQGDVSL 526

BLAST of MS003020 vs. NCBI nr
Match: RVW41094.1 (hypothetical protein CK203_069772 [Vitis vinifera])

HSP 1 Score: 228.8 bits (582), Expect = 7.1e-56
Identity = 140/350 (40.00%), Postives = 210/350 (60.00%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+AVRQ+ TM  YRR FE +   +  +   ++ES ++NGL  ++R E+R++KP GL  +
Sbjct: 136 QFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAELRLLKPYGLGHL 195

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
           MEMAQ +ED+N   L +    E  G  G   S K +     SA    +    +  +R + 
Sbjct: 196 MEMAQRVEDRN---LAMRAACEPNGPNGPK-STKML----SSANRGEWKIGENFQTRAVA 255

Query: 121 TSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKW 180
              K       +   ++LT+ EL+A+REKGLC+ C+EKFSPGH+CKK ELQVL+V E + 
Sbjct: 256 VGEKTMSQRREI-PIKRLTESELQARREKGLCFKCEEKFSPGHRCKK-ELQVLLVHEDE- 315

Query: 181 WRRFPGQVETIVEDREKEGVGF------TMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
                 + +   +DR  E            LSLNS V L +P   T+K++G I  ++VI+
Sbjct: 316 -----EEDDNQFDDRATEEPALIKLKDAVELSLNSVVDLTTP--GTMKIKGMIGSKEVII 375

Query: 241 LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
           LVDS ATHNF++LEL Q+  L  + T  YGV++GTG  V   G+C+ + +    LT+V+D
Sbjct: 376 LVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVED 435

Query: 301 FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           FLP+ LG+ +VIL + W+ T GD+ +N K LT+K  +GK  ++L+G+PSL
Sbjct: 436 FLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSL 467

BLAST of MS003020 vs. NCBI nr
Match: RVW54082.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-54
Identity = 134/350 (38.29%), Postives = 209/350 (59.71%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+AVRQ+ T+  Y R FE +   +  +   ++ES ++NGL  ++R E+ +++P GL  +
Sbjct: 193 QFLAVRQQRTVAAYWREFEILATPLKGISKEVMESTFMNGLLPEIRAELHLLQPYGLGHL 252

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
           MEMAQ +ED+N   L +    E  G  G   S K + SS+     +       N    + 
Sbjct: 253 MEMAQRVEDRN---LAMRAAREPNGPNGPK-STKMLSSSNRGEWKI-----RENFQTRVV 312

Query: 121 TSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKW 180
              +  ++       ++LT+ EL+A+REKGLC+ C+EKFSPGH+CKK EL+VL+V + + 
Sbjct: 313 VVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCKK-ELRVLLVHKDE- 372

Query: 181 WRRFPGQVETIVEDREKEGVG------FTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
                 + +   +DR  E            LSLNS VGL +P   T+K++G I  ++VI+
Sbjct: 373 -----EEDDNQFDDRATEEPALIELKDIVELSLNSVVGLTTP--GTMKIKGTIGSKEVII 432

Query: 241 LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
           LVDS ATHNF++LEL Q+  L  + T  YGV++GTG  V   G+C+ + +    LT+V+D
Sbjct: 433 LVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVED 492

Query: 301 FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           FLP+ LG+ +VIL + W+ T GD+ +N K LT+K  +GK  ++L+G+PSL
Sbjct: 493 FLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSL 524

BLAST of MS003020 vs. NCBI nr
Match: XP_024963751.1 (uncharacterized protein LOC112504018 [Cynara cardunculus var. scolymus])

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-54
Identity = 137/346 (39.60%), Postives = 205/346 (59.25%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F++VRQE ++ DYRR+F E    V+ +P  +  S +INGL+E ++ E+R++ P  L   
Sbjct: 161 QFLSVRQEGSVEDYRRKFVEFAAPVDGIPKQVFLSQFINGLEESIKVELRLLDPLTLSEA 220

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSS--SGSARTVSFTSNHSNTSRN 120
           ME+A  IE KN     V ++ +  G G      K  GSS  S      +F+S+  N   N
Sbjct: 221 MEVAMKIELKNK----VLSREKNAGYG------KKTGSSFYSNQESKSNFSSHGYNNVAN 280

Query: 121 IETSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEG 180
             + N   +AS +   FR+L+D E++ +R  GLCY CDEK++PGH+CKK+E+ VL+VQ+ 
Sbjct: 281 --SVNYPTIASKANTGFRRLSDQEVQQRRVLGLCYRCDEKYAPGHKCKKKEMSVLLVQDD 340

Query: 181 KWWRRFPGQVETIVEDREKEGVGFTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIVLVDS 240
            +    P   E +    +   V    + LNS VGL +P  KT+K+ GKI GQ V+VL+DS
Sbjct: 341 VFEDTEPETEEKVCNTAKI--VEKVEVHLNSVVGLTNP--KTMKLEGKIEGQKVVVLIDS 400

Query: 241 KATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQDFLPI 300
            ATHNFI+ +L ++  L    T  Y + LG+G      G+CK + L  P + I +DFLP+
Sbjct: 401 GATHNFISYDLVKRLNLKIEATGEYTITLGSGNVEKGSGICKGIMLSLPKVEIREDFLPL 460

Query: 301 PLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
            LG++NVIL +QW+ T G   +N K   +KF  G + V+L+G+PSL
Sbjct: 461 GLGNSNVILGMQWLETLGATYVNWKLQVMKFSCGGKSVMLKGDPSL 490

BLAST of MS003020 vs. ExPASy TrEMBL
Match: A0A438E000 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069772 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.5e-56
Identity = 140/350 (40.00%), Postives = 210/350 (60.00%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+AVRQ+ TM  YRR FE +   +  +   ++ES ++NGL  ++R E+R++KP GL  +
Sbjct: 136 QFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAELRLLKPYGLGHL 195

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
           MEMAQ +ED+N   L +    E  G  G   S K +     SA    +    +  +R + 
Sbjct: 196 MEMAQRVEDRN---LAMRAACEPNGPNGPK-STKML----SSANRGEWKIGENFQTRAVA 255

Query: 121 TSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKW 180
              K       +   ++LT+ EL+A+REKGLC+ C+EKFSPGH+CKK ELQVL+V E + 
Sbjct: 256 VGEKTMSQRREI-PIKRLTESELQARREKGLCFKCEEKFSPGHRCKK-ELQVLLVHEDE- 315

Query: 181 WRRFPGQVETIVEDREKEGVGF------TMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
                 + +   +DR  E            LSLNS V L +P   T+K++G I  ++VI+
Sbjct: 316 -----EEDDNQFDDRATEEPALIKLKDAVELSLNSVVDLTTP--GTMKIKGMIGSKEVII 375

Query: 241 LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
           LVDS ATHNF++LEL Q+  L  + T  YGV++GTG  V   G+C+ + +    LT+V+D
Sbjct: 376 LVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVED 435

Query: 301 FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           FLP+ LG+ +VIL + W+ T GD+ +N K LT+K  +GK  ++L+G+PSL
Sbjct: 436 FLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSL 467

BLAST of MS003020 vs. ExPASy TrEMBL
Match: A0A438F372 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_407 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 134/350 (38.29%), Postives = 209/350 (59.71%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+AVRQ+ T+  Y R FE +   +  +   ++ES ++NGL  ++R E+ +++P GL  +
Sbjct: 193 QFLAVRQQRTVAAYWREFEILATPLKGISKEVMESTFMNGLLPEIRAELHLLQPYGLGHL 252

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
           MEMAQ +ED+N   L +    E  G  G   S K + SS+     +       N    + 
Sbjct: 253 MEMAQRVEDRN---LAMRAAREPNGPNGPK-STKMLSSSNRGEWKI-----RENFQTRVV 312

Query: 121 TSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKW 180
              +  ++       ++LT+ EL+A+REKGLC+ C+EKFSPGH+CKK EL+VL+V + + 
Sbjct: 313 VVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCKK-ELRVLLVHKDE- 372

Query: 181 WRRFPGQVETIVEDREKEGVG------FTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
                 + +   +DR  E            LSLNS VGL +P   T+K++G I  ++VI+
Sbjct: 373 -----EEDDNQFDDRATEEPALIELKDIVELSLNSVVGLTTP--GTMKIKGTIGSKEVII 432

Query: 241 LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
           LVDS ATHNF++LEL Q+  L  + T  YGV++GTG  V   G+C+ + +    LT+V+D
Sbjct: 433 LVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVED 492

Query: 301 FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           FLP+ LG+ +VIL + W+ T GD+ +N K LT+K  +GK  ++L+G+PSL
Sbjct: 493 FLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSL 524

BLAST of MS003020 vs. ExPASy TrEMBL
Match: A0A5C7IJS7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-53
Identity = 140/350 (40.00%), Postives = 206/350 (58.86%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           +F+A+RQ+ T+++YRR+F E    ++ V   I  S +INGL  ++R E+RV+ P  L   
Sbjct: 174 QFLALRQQGTVKEYRRKFIEFLAPLDNVSDEITLSQFINGLNPEIRNELRVLDPINLGRA 233

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
           M++AQ IE K      +   G  + +GG + +       SG AR VS  +     +    
Sbjct: 234 MDLAQRIESK------LMAMGTLKLNGGYSAT-----KGSGYARPVSSPTGAPRPTHG-- 293

Query: 121 TSNKGGVASAS-LGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVV---Q 180
               G + SA+  G+ R+LTD EL+ KR  GLCY CDEK+SPGH+CKK+EL VL+    +
Sbjct: 294 ----GTLPSANPYGNLRRLTDSELQLKRTHGLCYRCDEKWSPGHKCKKKELNVLITYDEE 353

Query: 181 EGKWWRRFPGQV-ETIVEDRE-KEGVGFTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
           + +     P  V E ++E  E  E      +SLNS VGL +P  KT+K++G +  Q V+ 
Sbjct: 354 DEEEPEEAPVMVDEPVLEAAEISEFTEAVEVSLNSVVGLTTP--KTMKMKGIVGQQQVVF 413

Query: 241 LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
           L+D  ATHNFI+ +L QK +L  ++T  YGV +GTG  V   G+CK + L    + IV++
Sbjct: 414 LIDPGATHNFISADLVQKLKLPITRTEAYGVTMGTGDSVRGEGICKGVTLHLQGINIVEE 473

Query: 301 FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           FLP+ LGS++VIL +QW++T G    N K   +KF LG   V L+G+PSL
Sbjct: 474 FLPLGLGSSDVILGIQWLATLGMTHTNWKLQVMKFQLGNESVTLRGDPSL 504

BLAST of MS003020 vs. ExPASy TrEMBL
Match: A5B2I6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.0e-52
Identity = 132/350 (37.71%), Postives = 210/350 (60.00%), Query Frame = 0

Query: 1    RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
            +F+AVRQ+ T+  Y R FE +   +  +   ++ES ++NGL  ++R E R+++P GL  +
Sbjct: 854  QFLAVRQQGTVAAYWREFEILETPLKGISEEVMESTFMNGLLPEIRAEQRLLQPYGLGHL 913

Query: 61   MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGSARTVSFTSNHSNTSRNIE 120
            MEMAQ +ED+N     +A +  +E +G  +  + +      +A    +    +  +R + 
Sbjct: 914  MEMAQRVEDRN-----LAMRAAREPNGPKSTKMLS------TANRGEWKIGENFQTRAVA 973

Query: 121  TSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQEGKW 180
               K       +   ++LT+ EL+A+REKGL + C+EKFSPGH+CKK EL+VL+V E + 
Sbjct: 974  VGEKTMSQRREI-PIKRLTESELQARREKGLWFKCEEKFSPGHRCKK-ELRVLLVHEDE- 1033

Query: 181  WRRFPGQVETIVEDREKEGVGF------TMLSLNSFVGLASPKTKTLKVRGKIAGQDVIV 240
                  + +   +DR  E            LSLNS VGL +P   T+K++G I  ++VI+
Sbjct: 1034 -----EEDDNQFDDRATEEPALIELKDAVELSLNSVVGLTTP--GTMKIKGTIGSKEVII 1093

Query: 241  LVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQD 300
            LVDS ATHNF++LEL Q+  L  + T  YGV++GTG  V   G+C+ + +    LT+V+D
Sbjct: 1094 LVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVED 1153

Query: 301  FLPIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
            FLP+ LG+ +VIL + W+ T GD+ +N K LT+K  +GK  ++L+G+PSL
Sbjct: 1154 FLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVMVLKGDPSL 1182

BLAST of MS003020 vs. ExPASy TrEMBL
Match: A0A5A7U1I8 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004090 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.8e-52
Identity = 126/348 (36.21%), Postives = 205/348 (58.91%), Query Frame = 0

Query: 1   RFMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAI 60
           RF+A++QE ++ +Y +RFEE+   + E+   +L   + NGL   +R EV  M+  GL+ +
Sbjct: 150 RFLAIKQEGSVGEYLQRFEELSAPLPEMAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDM 209

Query: 61  MEMAQLIEDKNSASLVVATQGEKEGSGGSTCSLKTIGSSSGS----ARTVSFTSNHSNTS 120
           M+ A+L E+K   + V      K+       + K + + S      A  +  + N +N S
Sbjct: 210 MDAARLAEEKLEIARVSHGPYAKDFKSAQKPAPKNVETPSTKIVTLAERIPASVNQANNS 269

Query: 121 RNIETSNKGGVASASLGHFRKLTDVELRAKREKGLCYCCDEKFSPGHQCKKRELQVLVVQ 180
           +N  T    G+       FR+ TD EL+A+R+KGLCY C+E FS GH+CK REL++ VV 
Sbjct: 270 QNGAT----GMGGRRDTGFRRWTDSELQARRDKGLCYRCEEPFSKGHRCKNRELRLCVVA 329

Query: 181 EGKWWRRFPGQVETIVEDREKEGVGFTMLSLNSFVGLASPKTKTLKVRGKIAGQDVIVLV 240
           +          V++  E    E      LSLNS VGL +P   T K++G +  Q+++++V
Sbjct: 330 DD---LEDVEMVDSACEGEMVEVSPVVELSLNSVVGLTAP--GTFKLKGTVENQEIVIMV 389

Query: 241 DSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKVMELVFPNLTIVQDFL 300
           D  ATHNFI+L+L +  +L  ++T  YGVI+G+G  V   G+CK + +  P ++IV+DFL
Sbjct: 390 DCGATHNFISLKLVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFL 449

Query: 301 PIPLGSANVILMVQWMSTSGDITLNLKKLTLKFGLGKRRVLLQGEPSL 345
           P+ LG+ +++L +QW+   G +T++ K LT+ F +G  +V+L+G+PSL
Sbjct: 450 PLELGNIDMVLGMQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSL 488

BLAST of MS003020 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 0

Query: 217 KTKTLKVRGKIAGQDVIVLVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSH 276
           + K ++  G I    V+V +DS AT NFI +ELA   +L  S TN+  V+LG    + S 
Sbjct: 120 RNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSV 179

Query: 277 GVCKVMELVFPNLTIVQDFLPIPLG--SANVILMVQWMSTSGDITLNLKKLTLKFGLGKR 336
           G C  + L    + I ++FL + L     +VIL  +W+S  G+  +N +     F   ++
Sbjct: 180 GTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQ 239

Query: 337 RVLLQGE 342
            + L  E
Sbjct: 240 WITLCAE 246


HSP 2 Score: 43.1 bits (100), Expect = 5.2e-04
Identity = 19/58 (32.76%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 2  FMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKA 60
          +  ++QE ++RDYR RFE +      +P    E +++ GL+  ++  VR +KPNG+ +
Sbjct: 9  YSGIQQEGSVRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGINS 66

BLAST of MS003020 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-07
Identity = 41/144 (28.47%), Postives = 72/144 (50.00%), Query Frame = 0

Query: 162 GHQCKKRELQVLVVQEGKWWRRFPGQVETIVEDREKEGVGFTMLSLNSFVGLASPKTKTL 221
           G Q  + EL   ++ EG  +  +  + E ++ED +      T+  +         K K +
Sbjct: 232 GDQATQVELMSFIMVEGNTY-GYGNEWEGLLEDFK------TIRQVKRQSTTEFTKGKDM 291

Query: 222 KVRGKIAGQDVIVLVDSKATHNFIALELAQKCRLSCSQTNRYGVILGTGTEVMSHGVCKV 281
           +  G I+   V+V++DS AT+NFI+ ELA   +L  S TN+  V+LG    + + G C  
Sbjct: 292 RFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCFG 351

Query: 282 MELVFPNLTIVQDFLPIPLGSANV 306
           + L+   + I ++FL + L   +V
Sbjct: 352 INLLVQEVEINENFLLLDLTKTDV 368

BLAST of MS003020 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-07
Identity = 26/71 (36.62%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 2   FMAVRQETTMRDYRRRFEEVGGAVNEVPAFILESLYINGLKEDVRKEVRVMKPNGLKAIM 61
           +  ++QE ++R+YR RFE +      +P   LE+L++ GL+  ++  VR +KPNG+  +M
Sbjct: 343 YSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKPNGIVQMM 402

Query: 62  EMAQLIEDKNS 73
           + AQ +E+ NS
Sbjct: 403 DTAQWLEESNS 413

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024017591.11.1e-6141.48uncharacterized protein LOC112090471 [Morus notabilis][more]
XP_022848903.11.1e-5942.33uncharacterized protein LOC111371244 [Olea europaea var. sylvestris][more]
RVW41094.17.1e-5640.00hypothetical protein CK203_069772 [Vitis vinifera][more]
RVW54082.12.3e-5438.29Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera][more]
XP_024963751.15.1e-5439.60uncharacterized protein LOC112504018 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438E0003.5e-5640.00Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069... [more]
A0A438F3721.1e-5438.29Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976... [more]
A0A5C7IJS73.6e-5340.00Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1[more]
A5B2I61.0e-5237.71Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A5A7U1I88.8e-5236.21Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
AT3G29750.11.1e-0931.50Eukaryotic aspartyl protease family protein [more]
AT3G30770.11.7e-0728.47Eukaryotic aspartyl protease family protein [more]
AT3G42723.12.2e-0736.62aminoacyl-tRNA ligases;ATP binding;nucleotide binding [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 214..336
e-value: 2.9E-12
score: 48.4
NoneNo IPR availablePFAMPF08284RVP_2coord: 228..326
e-value: 2.4E-8
score: 33.9
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 5..340
NoneNo IPR availablePANTHERPTHR34482:SF20SUBFAMILY NOT NAMEDcoord: 5..340
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 223..312
e-value: 6.63907E-13
score: 61.9688

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003020.1MS003020.1mRNA