MS003010 (gene) Bitter gourd (TR) v1

Overview


Name	MS003010
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Short-chain dehydrogenase TIC 32
Location	scaffold595_1: 1004052 .. 1004168 (-)
RNA-Seq Expression	MS003010
Synteny	MS003010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACAGGTTCTGTTTCA

mRNA sequence

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACAGGTTCTGTTTCA

Coding sequence (CDS)

ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCGGAAGAAGTCGCAGAAGGGATCGATGGGAATGGCCTCACTGCTATTATTACAGGTTCTGTTTCA

Protein sequence

MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS

Homology

[Close]

BLAST of MS003010 vs. NCBI nr
Match: XP_022136624.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. NCBI nr
Match: KAA0044830.1 (short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. NCBI nr
Match: XP_004146522.1 (short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN53338.1 hypothetical protein Csa_014842 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. NCBI nr
Match: XP_008452031.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo] >TYK16634.1 short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. NCBI nr
Match: XP_038884091.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy Swiss-Prot
Match: A2RVM0 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-09
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+TG+ S
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy Swiss-Prot
Match: Q6RVV4 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.8e-05
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 1  MWIF-GWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW F   KG SGFS  STAE+V  GID  GLTAI+TG+ S
Sbjct: 1  MWPFSSKKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASS 40

[Close]

BLAST of MS003010 vs. ExPASy TrEMBL
Match: A0A5A7TNQ8 (Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001220 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy TrEMBL
Match: A0A5D3D084 (Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004620 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy TrEMBL
Match: A0A0A0KUV5 (Short-chain dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_4G047990 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy TrEMBL
Match: A0A6J1C4U8 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111008286 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. ExPASy TrEMBL
Match: A0A1S3BU18 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103493161 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MWIFGWKGPSGFSARSTAEEV EGIDGNGLTAI+TG+ S
Sbjct: 1  MWIFGWKGPSGFSARSTAEEVTEGIDGNGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. TAIR 10
Match: AT4G11410.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 5.5e-11
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW F WKG SGFSARSTAEEV  GIDG GLTAI+TG+ S
Sbjct: 1  MWPFWWKGASGFSARSTAEEVTHGIDGTGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. TAIR 10
Match: AT4G23420.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+TG+ S
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. TAIR 10
Match: AT4G23430.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+TG+ S
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. TAIR 10
Match: AT4G23420.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+TG+ S
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASS 39

[Close]

BLAST of MS003010 vs. TAIR 10
Match: AT4G23430.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MWIFGWKGPSGFSARSTAEEVAEGIDGNGLTAIITGSVS 40
          MW FG KG SGFS+RSTAEEV  G+DG GLTAI+TG+ S
Sbjct: 1  MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASS 39

The following BLAST results are available for this feature:

BLAST of MS003010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136624.1	6.7e-11	89.74	short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia]	[more]
KAA0044830.1	6.7e-11	89.74	short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa]	[more]
XP_004146522.1	6.7e-11	89.74	short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN53338.1 hy...	[more]
XP_008452031.1	6.7e-11	89.74	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo] >...	[more]
XP_038884091.1	6.7e-11	89.74	short-chain dehydrogenase TIC 32, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MS003010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVM0	5.0e-09	71.79	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6RVV4	9.8e-05	62.50	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]

BLAST of MS003010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNQ8	3.3e-11	89.74	Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3D084	3.3e-11	89.74	Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KUV5	3.3e-11	89.74	Short-chain dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_4G047990 PE=4 SV=1	[more]
A0A6J1C4U8	3.3e-11	89.74	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Momordica charantia OX=3...	[more]
A0A1S3BU18	3.3e-11	89.74	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MS003010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11410.1	5.5e-11	76.92	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.1	3.6e-10	71.79	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.1	3.6e-10	71.79	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.2	3.6e-10	71.79	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.2	3.6e-10	71.79	NAD(P)-binding Rossmann-fold superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003010.1	MS003010.1	mRNA