MS003005 (gene) Bitter gourd (TR) v1

Overview


Name	MS003005
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	light-regulated protein-like
Location	scaffold595_1: 953148 .. 953727 (-)
RNA-Seq Expression	MS003005
Synteny	MS003005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTGCAGGCAGCTCTTTCCCTAACACCTCCTCCATCATCATGCTCCCTCCTAGTCCTCCCACCAACCAAGCAATTGGCTTTCCCAATACCAACCAGGTCCATCCCAAGGCACCCCGCCCTAAAATCCAAGGCCAGTGCGGTTGGAAAAGACCCTTCAACTGTCGACTACACTTCCACCTCCTCGTAAGCCACCCATAATCATTTCTTTTGTCTCATTCCATACGCTTCACTTCCTCATCTGTCTGTTTTTGCAGTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGGGAGGCTTGTGATGTAGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGACCAAGAAGGGGAGTAGTGTTTCAGAGCCAGTTGATAGAGAGTATCTACAATATGACAGTCCCAAGACGTAAGATTTCCAACACCACACAACCAACCCATTTCCTCCGAAACAACCCATTTTCTGTATGCAATTTTGTTCTTAAATTTTAATGATTGCTGCAGAGTCTTTCCAGGAGAGGCTTGCGATGATCTTGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTAC

mRNA sequence

ATGCAGTTGCAGGCAGCTCTTTCCCTAACACCTCCTCCATCATCATGCTCCCTCCTAGTCCTCCCACCAACCAAGCAATTGGCTTTCCCAATACCAACCAGGTCCATCCCAAGGCACCCCGCCCTAAAATCCAAGGCCAGTGCGGTTGGAAAAGACCCTTCAACTGTCGACTACACTTCCACCTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGGGAGGCTTGTGATGTAGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGACCAAGAAGGGGAGTAGTGTTTCAGAGCCAGTTGATAGAGAGTATCTACAATATGACAGTCCCAAGACAGTCTTTCCAGGAGAGGCTTGCGATGATCTTGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTAC

Coding sequence (CDS)

ATGCAGTTGCAGGCAGCTCTTTCCCTAACACCTCCTCCATCATCATGCTCCCTCCTAGTCCTCCCACCAACCAAGCAATTGGCTTTCCCAATACCAACCAGGTCCATCCCAAGGCACCCCGCCCTAAAATCCAAGGCCAGTGCGGTTGGAAAAGACCCTTCAACTGTCGACTACACTTCCACCTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGGGAGGCTTGTGATGTAGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGACCAAGAAGGGGAGTAGTGTTTCAGAGCCAGTTGATAGAGAGTATCTACAATATGACAGTCCCAAGACAGTCTTTCCAGGAGAGGCTTGCGATGATCTTGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTAC

Protein sequence

MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

Homology

[Close]

BLAST of MS003005 vs. NCBI nr
Match: XP_022148909.1 (light-regulated protein-like [Momordica charantia])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS 60
           MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS
Sbjct: 2   MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS 61

Query: 61  TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA 120
           TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA
Sbjct: 62  TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA 121

Query: 121 CDDLGGEFCDPEYQKGVY 139
           CDDLGGEFCDPEYQKGVY
Sbjct: 122 CDDLGGEFCDPEYQKGVY 139

[Close]

BLAST of MS003005 vs. NCBI nr
Match: XP_008459906.1 (PREDICTED: light-regulated protein-like [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 8.6e-53
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVD
Sbjct: 1   MQLQAALSIAPP--SCSL--LPPTAKLMAFSIQTRSLPRQSQGTLKAKASAVGQEPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSSV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. NCBI nr
Match: KAA0039854.1 (light-regulated protein-like [Cucumis melo var. makuwa] >TYK24647.1 light-regulated protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 8.6e-53
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVD
Sbjct: 1   MQLQAALSIAPP--SCSL--LPPTAKLMAFSIQTRSLPRQSKGTLKAKASAVGQEPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSSV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. NCBI nr
Match: NP_001267523.1 (light-regulated protein-like [Cucumis sativus] >KGN46414.1 hypothetical protein Csa_005346 [Cucumis sativus] >BAA06153.1 CR9 [Cucumis sativus] >CBZ13178.1 putative cytokinin-repressed protein [Cucumis sativus] >prf||2016504A cytokinin-repressed protein CR9 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 114/141 (80.85%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQ QAALS+  P  SCSL  LPPT K +AF IPTRS+PR     LK+KASAVG+DPSTVD
Sbjct: 1   MQFQAALSIASP--SCSL--LPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKG+SV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. NCBI nr
Match: XP_038906788.1 (light-regulated protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 7.3e-52
Identity = 115/146 (78.77%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHPA-------LKSKASAVGKD 60
           MQLQAALS+   PSSCSL  LPPT K +AF + +RSI RHP        LK+KASAVG+D
Sbjct: 1   MQLQAALSVA-TPSSCSL--LPPTAKSMAFSVRSRSIGRHPTSQTQRPILKAKASAVGQD 60

Query: 61  PSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSP 120
           PSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KK  SV+EPVDREYLQYDSP
Sbjct: 61  PSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKQGSVTEPVDREYLQYDSP 120

Query: 121 KTVFPGEACDDLGGEFCDPEYQKGVY 139
           KTVFP EACDDLGGEFCDPEYQKGVY
Sbjct: 121 KTVFPAEACDDLGGEFCDPEYQKGVY 143

[Close]

BLAST of MS003005 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 9   LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-S 68
           L P PSS S      + +L F +P      R  +L+    S +S++  DP+TVDY S+  
Sbjct: 12  LLPLPSSVS------SPKLTFLLPHATKASRLSSLRSNNSSSSSSLTSDPNTVDYNSSIL 71

Query: 69  SVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEACD 128
           SVFPAEAC+ + G AC  ++YPEVKL  +       SEPVDREY +Y+SPKTVF  EACD
Sbjct: 72  SVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVASEPVDREYEEYNSPKTVFREEACD 131

Query: 129 DLGGEFCDPEYQK 136
           DLGGEFC+P++QK
Sbjct: 132 DLGGEFCEPDFQK 138

[Close]

BLAST of MS003005 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 37  PRHPAL--KSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKK 96
           PR  AL  ++ A+AV  + + VDY+S  SVFP EACD +GGEAC+V+MYPE KL      
Sbjct: 29  PRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAV 88

Query: 97  GSS--VSEPVDREYLQYDSPKTVFPGEACDDLGGEFC 130
             S   +E VDR+YL YD P TVFP EACDDLGGEFC
Sbjct: 89  AVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFC 125

[Close]

BLAST of MS003005 vs. ExPASy TrEMBL
Match: A0A6J1D5F7 (light-regulated protein-like OS=Momordica charantia OX=3673 GN=LOC111017460 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 6.9e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS 60
           MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS
Sbjct: 2   MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTS 61

Query: 61  TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA 120
           TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA
Sbjct: 62  TSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEA 121

Query: 121 CDDLGGEFCDPEYQKGVY 139
           CDDLGGEFCDPEYQKGVY
Sbjct: 122 CDDLGGEFCDPEYQKGVY 139

[Close]

BLAST of MS003005 vs. ExPASy TrEMBL
Match: A0A5D3DLY7 (Light-regulated protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001960 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVD
Sbjct: 1   MQLQAALSIAPP--SCSL--LPPTAKLMAFSIQTRSLPRQSKGTLKAKASAVGQEPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSSV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. ExPASy TrEMBL
Match: A0A1S3CBQ8 (light-regulated protein-like OS=Cucumis melo OX=3656 GN=LOC103498886 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVD
Sbjct: 1   MQLQAALSIAPP--SCSL--LPPTAKLMAFSIQTRSLPRQSQGTLKAKASAVGQEPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSSV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. ExPASy TrEMBL
Match: Q39636 (CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.1e-53
Identity = 114/141 (80.85%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVD 60
           MQ QAALS+  P  SCSL  LPPT K +AF IPTRS+PR     LK+KASAVG+DPSTVD
Sbjct: 1   MQFQAALSIASP--SCSL--LPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVD 60

Query: 61  YTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFP 120
           Y+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKG+SV+EPV+REYLQYDSPKTVFP
Sbjct: 61  YSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTVFP 120

Query: 121 GEACDDLGGEFCDPEYQKGVY 139
            EACDDLGGEFCDPEYQKGVY
Sbjct: 121 AEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of MS003005 vs. ExPASy TrEMBL
Match: A0A6J1JSC1 (light-regulated protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488476 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 113/145 (77.93%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPA-------LKSKASAVGKDP 60
           MQLQAA SL   PSSC LL  P TK +AF +P+RS+ RHP        LK+KASAVG+DP
Sbjct: 1   MQLQAAPSLA-HPSSCYLLP-PTTKLMAFSVPSRSMRRHPTSQTHRPILKAKASAVGQDP 60

Query: 61  STVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPK 120
           STVDY+S SSVFPAEAC+TVGGEACDVEMYPEVKLKPE KKG SVSE VDREYLQYDSPK
Sbjct: 61  STVDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPK 120

Query: 121 TVFPGEACDDLGGEFCDPEYQKGVY 139
           TVFP EACDDLGGEFCDPEYQKGVY
Sbjct: 121 TVFPAEACDDLGGEFCDPEYQKGVY 143

[Close]

BLAST of MS003005 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-26
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 9   LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-S 68
           L P PSS S      + +L F +P      R  +L+    S +S++  DP+TVDY S+  
Sbjct: 12  LLPLPSSVS------SPKLTFLLPHATKASRLSSLRSNNSSSSSSLTSDPNTVDYNSSIL 71

Query: 69  SVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYDSPKTVFPGEACD 128
           SVFPAEAC+ + G AC  ++YPEVKL  +       SEPVDREY +Y+SPKTVF  EACD
Sbjct: 72  SVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVASEPVDREYEEYNSPKTVFREEACD 131

Query: 129 DLGGEFCDPEYQK 136
           DLGGEFC+P++QK
Sbjct: 132 DLGGEFCEPDFQK 138

The following BLAST results are available for this feature:

BLAST of MS003005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148909.1	1.4e-71	100.00	light-regulated protein-like [Momordica charantia]	[more]
XP_008459906.1	8.6e-53	81.56	PREDICTED: light-regulated protein-like [Cucumis melo]	[more]
KAA0039854.1	8.6e-53	81.56	light-regulated protein-like [Cucumis melo var. makuwa] >TYK24647.1 light-regula...	[more]
NP_001267523.1	1.5e-52	80.85	light-regulated protein-like [Cucumis sativus] >KGN46414.1 hypothetical protein ...	[more]
XP_038906788.1	7.3e-52	78.77	light-regulated protein, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MS003005 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96500	1.0e-24	49.62	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]
Q03200	4.3e-23	57.73	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of MS003005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5F7	6.9e-72	100.00	light-regulated protein-like OS=Momordica charantia OX=3673 GN=LOC111017460 PE=4...	[more]
A0A5D3DLY7	4.2e-53	81.56	Light-regulated protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CBQ8	4.2e-53	81.56	light-regulated protein-like OS=Cucumis melo OX=3656 GN=LOC103498886 PE=4 SV=1	[more]
Q39636	7.1e-53	80.85	CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1	[more]
A0A6J1JSC1	1.0e-51	77.93	light-regulated protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS003005 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26740.1	7.3e-26	49.62	CCR-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 4..130 e-value: 2.1E-44 score: 151.0
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC	coord: 3..137
None	No IPR available	PANTHER	PTHR36762:SF4	LIGHT-REGULATED PROTEIN-LIKE	coord: 3..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003005.1	MS003005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast