MS002976 (gene) Bitter gourd (TR) v1

Overview
NameMS002976
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold595_1: 647563 .. 647763 (+)
RNA-Seq ExpressionMS002976
SyntenyMS002976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGGGTTCTAAGTGCAGAACTTGAGGGGGAAAACCATGATATATTAATAGTAAAGGGGGTTTTTGAAGTGAAAAAGCTTGAGAGACATATCTGGAGAGGAGCCGATAAAATTGTGACGATTCTCAAGGAAGAAACTGCGGCGGCCGGCGGCGGCGGTGGCGGTGGCGGAGAGGCAGAAGAAAGAGAAGCAGACGGCGAA

mRNA sequence

AAAGGGGTTCTAAGTGCAGAACTTGAGGGGGAAAACCATGATATATTAATAGTAAAGGGGGTTTTTGAAGTGAAAAAGCTTGAGAGACATATCTGGAGAGGAGCCGATAAAATTGTGACGATTCTCAAGGAAGAAACTGCGGCGGCCGGCGGCGGCGGTGGCGGTGGCGGAGAGGCAGAAGAAAGAGAAGCAGACGGCGAA

Coding sequence (CDS)

AAAGGGGTTCTAAGTGCAGAACTTGAGGGGGAAAACCATGATATATTAATAGTAAAGGGGGTTTTTGAAGTGAAAAAGCTTGAGAGACATATCTGGAGAGGAGCCGATAAAATTGTGACGATTCTCAAGGAAGAAACTGCGGCGGCCGGCGGCGGCGGTGGCGGTGGCGGAGAGGCAGAAGAAAGAGAAGCAGACGGCGAA

Protein sequence

KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAEEREADGE
Homology
BLAST of MS002976 vs. NCBI nr
Match: XP_022989967.1 (uncharacterized protein LOC111486994 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          KG+ SAE++ EN +++ VKGVFEV+KL  H+ RG DKIVTI+KEE  AAGGG GGG E  
Sbjct: 9  KGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEEN-AAGGGSGGGEEGI 68

Query: 61 EREADG 67
          E  A G
Sbjct: 69 EAAAAG 73

BLAST of MS002976 vs. NCBI nr
Match: KAG6600923.1 (hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          +GV SAE++ EN +++ VKGVFEV+KL  H+ RG DKIVT++KEE  AAGGG GGG E  
Sbjct: 4  EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEEN-AAGGGSGGGEEGI 63

Query: 61 EREADG 67
          E  A G
Sbjct: 64 EAAAAG 68

BLAST of MS002976 vs. NCBI nr
Match: KAA0039827.1 (hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK24671.1 hypothetical protein E5676_scaffold266G002210 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 2   GVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAEE 61
           GV+SAE++ E  +++ VKGVFEVKKL  HI +G +KIVT++KEE A AG     GGE E+
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGE-EQ 107

Query: 62  READGE 68
           REA GE
Sbjct: 108 REAAGE 112

BLAST of MS002976 vs. NCBI nr
Match: KAG7014642.1 (Heavy metal-associated isoprenylated plant protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-06
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          KGV S ++E E+ +++ V GVFEV+KL  HI RG DKIVT++K+E AA GG G G  + E
Sbjct: 26 KGVQSVQVEEESPELIRVTGVFEVQKLVAHIRRGVDKIVTVVKQENAAGGGSGDGEQQIE 85

Query: 61 EREADG 67
          +    G
Sbjct: 86 DAPTGG 91

BLAST of MS002976 vs. NCBI nr
Match: KAG6576124.1 (hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          KGV S ++E ++ +++ V GVFEV+KL  HI RG DKIVT++K+E AA GG G G  + E
Sbjct: 29 KGVQSVQVEEDSPELIRVTGVFEVQKLVAHIRRGVDKIVTVIKQENAAGGGSGDGEQQIE 88

Query: 61 EREADG 67
          +    G
Sbjct: 89 DAPTGG 94

BLAST of MS002976 vs. ExPASy TrEMBL
Match: A0A6J1JHA3 (uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          KG+ SAE++ EN +++ VKGVFEV+KL  H+ RG DKIVTI+KEE  AAGGG GGG E  
Sbjct: 9  KGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEEN-AAGGGSGGGEEGI 68

Query: 61 EREADG 67
          E  A G
Sbjct: 69 EAAAAG 73

BLAST of MS002976 vs. ExPASy TrEMBL
Match: A0A0A0KDJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.4e-08
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 1  KGVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAE 60
          KGV+SAE++ E  +++ VKGVFEVKKL  HI RG +KI T++KEE A+A      GGE +
Sbjct: 2  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASA------GGEDQ 61

Query: 61 EREADGE 68
          +REA GE
Sbjct: 62 QREAAGE 62

BLAST of MS002976 vs. ExPASy TrEMBL
Match: A0A5A7TE72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002210 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 2   GVLSAELEGENHDILIVKGVFEVKKLERHIWRGADKIVTILKEETAAAGGGGGGGGEAEE 61
           GV+SAE++ E  +++ VKGVFEVKKL  HI +G +KIVT++KEE A AG     GGE E+
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGE-EQ 107

Query: 62  READGE 68
           REA GE
Sbjct: 108 REAAGE 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022989967.11.4e-0860.61uncharacterized protein LOC111486994 [Cucurbita maxima][more]
KAG6600923.13.1e-0859.09hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0039827.12.7e-0757.58hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK246... [more]
KAG7014642.16.6e-0650.00Heavy metal-associated isoprenylated plant protein 8, partial [Cucurbita argyros... [more]
KAG6576124.11.1e-0548.48hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JHA36.8e-0960.61uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994... [more]
A0A0A0KDJ74.4e-0855.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1[more]
A0A5A7TE721.3e-0757.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002976.1MS002976.1mRNA