MS002964 (gene) Bitter gourd (TR) v1

Overview
NameMS002964
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold595_1: 530659 .. 531009 (-)
RNA-Seq ExpressionMS002964
SyntenyMS002964
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAATCAGAAGCGGAGAGGCTTCATGAAGCGCCTGTTTCGAGCCGCGAGATCCCGCGTCAAAGCCAATGAGAAGCAAACCAACTCGCCGGCGCCGTCTACATCGTTAACCGGCGGCGGCGGCGGATCGTTTGCGGTGTCTAGCGAGATGAGATCTGCAAGTTATCCGAACAGGCAGGCGCCGGCGATGGCGGTGCAGGGCGGACTCCGCGACGGAAACGGTGGAGTGCGGGGAGGTTACGGCGGCGGCGATGAGAACGTGGACGTGAAGGCGGCGACTTACATTTTGTACGTTAGAGAGCGTTTGAAGATCGAGAGATCAGTGGATTGGGATCAAAAGGTCTTC

mRNA sequence

ATGGAGAAAAATCAGAAGCGGAGAGGCTTCATGAAGCGCCTGTTTCGAGCCGCGAGATCCCGCGTCAAAGCCAATGAGAAGCAAACCAACTCGCCGGCGCCGTCTACATCGTTAACCGGCGGCGGCGGCGGATCGTTTGCGGTGTCTAGCGAGATGAGATCTGCAAGTTATCCGAACAGGCAGGCGCCGGCGATGGCGGTGCAGGGCGGACTCCGCGACGGAAACGGTGGAGTGCGGGGAGGTTACGGCGGCGGCGATGAGAACGTGGACGTGAAGGCGGCGACTTACATTTTGTACGTTAGAGAGCGTTTGAAGATCGAGAGATCAGTGGATTGGGATCAAAAGGTCTTC

Coding sequence (CDS)

ATGGAGAAAAATCAGAAGCGGAGAGGCTTCATGAAGCGCCTGTTTCGAGCCGCGAGATCCCGCGTCAAAGCCAATGAGAAGCAAACCAACTCGCCGGCGCCGTCTACATCGTTAACCGGCGGCGGCGGCGGATCGTTTGCGGTGTCTAGCGAGATGAGATCTGCAAGTTATCCGAACAGGCAGGCGCCGGCGATGGCGGTGCAGGGCGGACTCCGCGACGGAAACGGTGGAGTGCGGGGAGGTTACGGCGGCGGCGATGAGAACGTGGACGTGAAGGCGGCGACTTACATTTTGTACGTTAGAGAGCGTTTGAAGATCGAGAGATCAGTGGATTGGGATCAAAAGGTCTTC

Protein sequence

MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGSFAVSSEMRSASYPNRQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVDWDQKVF
Homology
BLAST of MS002964 vs. NCBI nr
Match: KAA0039815.1 (hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK24682.1 hypothetical protein E5676_scaffold266G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-24
Identity = 73/112 (65.18%), Postives = 82/112 (73.21%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTS-LTGGGGGSFAVSSEMRSASYPN 60
           MEKNQKR+GF++RL+RAARS  KA  KQTN P PSTS  +G G  SFA SSE  SAS PN
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGDGSDSFANSSETESASNPN 60

Query: 61  RQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVD 112
           R   A  VQ      +G   GGYGGGDENVDVKAATYIL V+ERLK+ERS+D
Sbjct: 61  RSVAAATVQKQASSAHGAY-GGYGGGDENVDVKAATYILLVKERLKMERSMD 111

BLAST of MS002964 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_005040 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGS-FAVSSEMRSASYPN 60
           ME  QKR+GF++RL+RAARS  KA  KQ+N P PSTS   G G   FA SSE +SAS PN
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  RQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVD 112
           R   A  VQ      + G  GGYGGGDENVDVKAATYIL V+ERLK+ERS+D
Sbjct: 61  RPVAATTVQKQASSTHHGAYGGYGGGDENVDVKAATYILLVKERLKMERSMD 112

BLAST of MS002964 vs. NCBI nr
Match: KAG6592959.1 (hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-17
Identity = 66/116 (56.90%), Postives = 77/116 (66.38%), Query Frame = 0

Query: 11  MKRLFRAARS--RVKANEKQTNSPAP---STSLTGGGG-GSFAVSSEMRSASYPNR---- 70
           M+RL+RAARS  + KA  KQ+N PA    +T   G GG G F   SEMRS SYPN+    
Sbjct: 1   MRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRSESYPNKSAAA 60

Query: 71  ----QAPAMAVQGGLRDGNGGVRGGYG--GGDENVDVKAATYILYVRERLKIERSV 111
               Q  A +  GG RDGNG +RG YG  GGDENVDVKA TYIL+VRERLK+ERS+
Sbjct: 61  PRAGQKQASSAHGGFRDGNGEMRGTYGGYGGDENVDVKATTYILWVRERLKMERSM 116

BLAST of MS002964 vs. NCBI nr
Match: KAF3944789.1 (hypothetical protein CMV_028773 [Castanea mollissima])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTN-SPAPSTSLTGGG-GGSFAVSSEMRSASYP 60
           MEK+  RR F+K +++A R  V  +   +   P P  S  G   G SF     + + S  
Sbjct: 241 MEKDHNRRSFIKGIYQAVRPLVPLHRGSSKVKPIPQPSHYGSSKGTSFHTEQYLATPSSS 300

Query: 61  NRQAPAMAVQGGLRDGNGGVRGGYG-GGDENVDVKAATYILYVRERLKIERSVDWDQKV 117
             +A   A   GLR  NG   G    GGDENVD+KAA+YI YVRER K E+ VD D ++
Sbjct: 301 MPKALFSAKPTGLRGYNGDFHGPSDYGGDENVDMKAASYISYVRERFKHEK-VDLDHRM 358

BLAST of MS002964 vs. NCBI nr
Match: PON54965.1 (hypothetical protein TorRG33x02_300840 [Trema orientale])

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0

Query: 1   MEKNQKRR---GFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGSFAV-SSEMRSAS 60
           MEK QKRR   GFMK L+R A S+  + E++ +   PS  +  G   S     + + SA 
Sbjct: 1   MEKTQKRRVGGGFMKALYRVA-SKPNSGERRGSKVNPSPIVAKGSFSSPQYWMTSLSSAH 60

Query: 61  YPNRQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVDWDQKV 118
            P           G+ +       G  GGDENVD+KAA+YI YVRER K++++ D DQ++
Sbjct: 61  EPIGLPDHFCDVYGVNECRESRDNGVAGGDENVDLKAASYISYVRERFKLDKA-DSDQRM 119

BLAST of MS002964 vs. ExPASy TrEMBL
Match: A0A5A7TED2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002320 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 73/112 (65.18%), Postives = 82/112 (73.21%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTS-LTGGGGGSFAVSSEMRSASYPN 60
           MEKNQKR+GF++RL+RAARS  KA  KQTN P PSTS  +G G  SFA SSE  SAS PN
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGDGSDSFANSSETESASNPN 60

Query: 61  RQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVD 112
           R   A  VQ      +G   GGYGGGDENVDVKAATYIL V+ERLK+ERS+D
Sbjct: 61  RSVAAATVQKQASSAHGAY-GGYGGGDENVDVKAATYILLVKERLKMERSMD 111

BLAST of MS002964 vs. ExPASy TrEMBL
Match: A0A0A0KCA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.5e-23
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGS-FAVSSEMRSASYPN 60
           ME  QKR+GF++RL+RAARS  KA  KQ+N P PSTS   G G   FA SSE +SAS PN
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  RQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVD 112
           R   A  VQ      + G  GGYGGGDENVDVKAATYIL V+ERLK+ERS+D
Sbjct: 61  RPVAATTVQKQASSTHHGAYGGYGGGDENVDVKAATYILLVKERLKMERSMD 112

BLAST of MS002964 vs. ExPASy TrEMBL
Match: A0A2N9HFE1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38273 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGSFAVSSEMRSASYPN- 60
           MEKN K R FMK +   A+S + A       P P +  +    G  +       +S P  
Sbjct: 1   MEKNHK-RSFMKSI---AKSILPAQRGSKVKPIPPSQYSNKSTGFHSEQYFPNPSSMPKP 60

Query: 61  RQAPAMAVQGGLRDGNGGVRG-GYGGGDENVDVKAATYILYVRERLKIERSVDWDQKVF 118
           +  P+ A   GL   +G VRG    GGDENVD+KAA+YI YVRERLK+E+ VD D + +
Sbjct: 61  KPKPSSAKPTGLYGSSGDVRGFSDNGGDENVDIKAASYISYVRERLKVEK-VDSDYRTY 114

BLAST of MS002964 vs. ExPASy TrEMBL
Match: A0A2P5C1U5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_300840 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0

Query: 1   MEKNQKRR---GFMKRLFRAARSRVKANEKQTNSPAPSTSLTGGGGGSFAV-SSEMRSAS 60
           MEK QKRR   GFMK L+R A S+  + E++ +   PS  +  G   S     + + SA 
Sbjct: 1   MEKTQKRRVGGGFMKALYRVA-SKPNSGERRGSKVNPSPIVAKGSFSSPQYWMTSLSSAH 60

Query: 61  YPNRQAPAMAVQGGLRDGNGGVRGGYGGGDENVDVKAATYILYVRERLKIERSVDWDQKV 118
            P           G+ +       G  GGDENVD+KAA+YI YVRER K++++ D DQ++
Sbjct: 61  EPIGLPDHFCDVYGVNECRESRDNGVAGGDENVDLKAASYISYVRERFKLDKA-DSDQRM 119

BLAST of MS002964 vs. ExPASy TrEMBL
Match: A0A7N2L8U0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 45/112 (40.18%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 1   MEKNQKRRGFMKRLFRAARSRV---KANEKQTNSPAPSTSLTGGGGGSFAVSSEMRSASY 60
           MEK  KRR F+K +++AA+  V   + + K   SP PS       G SF     + + S 
Sbjct: 1   MEKGHKRRSFIKSIYQAAKPLVPSHRGSSKVKPSPQPS-HYCSSKGTSFHTEQHLATPSS 60

Query: 61  PNRQAPAMAVQGGLRDGNGGVRG-GYGGGDENVDVKAATYILYVRERLKIER 109
              +A   A   GL   NG   G     GDENVD+KAA+YI YVRER K E+
Sbjct: 61  SMPKALFSAKPTGLHGYNGDFHGPSDHRGDENVDMKAASYISYVRERFKHEK 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039815.17.1e-2465.18hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK2468... [more]
KGN46459.11.8e-2261.61hypothetical protein Csa_005040 [Cucumis sativus][more]
KAG6592959.12.9e-1756.90hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3944789.12.2e-0440.34hypothetical protein CMV_028773 [Castanea mollissima][more]
PON54965.14.8e-0438.02hypothetical protein TorRG33x02_300840 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TED23.5e-2465.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCA48.5e-2361.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1[more]
A0A2N9HFE14.7e-0540.34Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38273 PE=4 SV=1[more]
A0A2P5C1U52.3e-0438.02Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_300840 PE=4 SV... [more]
A0A7N2L8U08.9e-0440.18Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..57
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002964.1MS002964.1mRNA