MS002960 (gene) Bitter gourd (TR) v1

Overview


Name	MS002960
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor
Location	scaffold595_1: 430714 .. 430855 (+)
RNA-Seq Expression	MS002960
Synteny	MS002960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTCGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACGTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTCGCGATCTCTGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTTTTG

mRNA sequence

GAGTCGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACGTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTGCGATCTCTGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTTTTG

Coding sequence (CDS)

GAGTCGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACGTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTGCGATCTCTGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTTTTG

Protein sequence

ESNRIEDSCNRYVTFCKRRSGIIKKAAISVLCDVELRLVVFTNRGVL

Homology

[Close]

BLAST of MS002960 vs. NCBI nr
Match: XP_022155416.1 (MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. NCBI nr
Match: XP_022155415.1 (MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. NCBI nr
Match: XP_022155417.1 (MADS-box transcription factor 8-like isoform X3 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. NCBI nr
Match: XP_023514206.1 (MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Sbjct: 7  ELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRL 54

[Close]

BLAST of MS002960 vs. NCBI nr
Match: KAG6592961.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025372.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Sbjct: 7  ELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRL 54

[Close]

BLAST of MS002960 vs. ExPASy Swiss-Prot
Match: Q40168 (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ LVVF+NRG L
Sbjct: 23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRL 70

[Close]

BLAST of MS002960 vs. ExPASy Swiss-Prot
Match: Q2V0P1 (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS58 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE++ NR VTFCKRRSG++KKA  +SVLCD E+ LVVF++RG L
Sbjct: 49 EIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRL 96

[Close]

BLAST of MS002960 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-09
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Sbjct: 7  EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MS002960 vs. ExPASy Swiss-Prot
Match: P17839 (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana OX=3702 GN=AG PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Sbjct: 23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRL 70

[Close]

BLAST of MS002960 vs. ExPASy Swiss-Prot
Match: Q01540 (Floral homeotic protein AGAMOUS OS=Brassica napus OX=3708 GN=AG1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Sbjct: 23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRL 70

[Close]

BLAST of MS002960 vs. ExPASy TrEMBL
Match: A0A6J1DME3 (MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. ExPASy TrEMBL
Match: A0A6J1DRL9 (MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Sbjct: 46 EVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRL 93

[Close]

BLAST of MS002960 vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-10
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Sbjct: 7  ELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRL 54

[Close]

BLAST of MS002960 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-10
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LV+FTNRG L
Sbjct: 7  ELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRL 54

[Close]

BLAST of MS002960 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-10
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Sbjct: 7  EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MS002960 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-10
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Sbjct: 7  EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MS002960 vs. TAIR 10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-10
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Sbjct: 33 EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 80

[Close]

BLAST of MS002960 vs. TAIR 10
Match: AT4G09960.4 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-10
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Sbjct: 7  EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 54

[Close]

BLAST of MS002960 vs. TAIR 10
Match: AT4G18960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 59.3 bits (142), Expect = 9.5e-10
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL 48
          E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Sbjct: 23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRL 70

The following BLAST results are available for this feature:

BLAST of MS002960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155416.1	4.0e-10	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]	[more]
XP_022155415.1	4.0e-10	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]	[more]
XP_022155417.1	4.0e-10	77.08	MADS-box transcription factor 8-like isoform X3 [Momordica charantia]	[more]
XP_023514206.1	1.2e-09	77.08	MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]	[more]
KAG6592961.1	1.2e-09	77.08	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of MS002960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40168	2.7e-09	64.58	Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1	[more]
Q2V0P1	4.6e-09	64.58	MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38836	7.9e-09	62.50	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
P17839	1.3e-08	60.42	Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana OX=3702 GN=AG PE=1 SV=2	[more]
Q01540	1.3e-08	60.42	Floral homeotic protein AGAMOUS OS=Brassica napus OX=3708 GN=AG1 PE=2 SV=1	[more]

BLAST of MS002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DME3	1.9e-10	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1DPA0	1.9e-10	77.08	MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRL9	1.9e-10	77.08	MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=367...	[more]
A0A6J1H7I9	5.7e-10	77.08	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KPU7	7.4e-10	75.00	MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4...	[more]

BLAST of MS002960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09960.2	5.6e-10	62.50	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.1	5.6e-10	62.50	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	5.6e-10	62.50	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.4	5.6e-10	62.50	K-box region and MADS-box transcription factor family protein	[more]
AT4G18960.1	9.5e-10	60.42	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..47 e-value: 1.2E-4 score: 31.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 4..45 e-value: 1.6E-14 score: 53.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 17.422792
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 7..47 e-value: 4.2E-11 score: 44.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..46
None	No IPR available	PANTHER	PTHR11945:SF150	AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED	coord: 3..47
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002960.1	MS002960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity