MS002959 (gene) Bitter gourd (TR) v1

Overview


Name	MS002959
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor
Location	scaffold595_1: 423541 .. 423723 (-)
RNA-Seq Expression	MS002959
Synteny	MS002959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGCTGTAATCGCCATGTGACCTTCTGCAAGAGAAGATCTGGACTCATCAAGAAGGCTCGCGAGCTCTCTGTTCTCTGCGACGTTGAGCTCGGACTCCTCATCTTCACCAACCGTGGCCGCCTCTACGAGTTTTGCAGCGGAAAT

mRNA sequence

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGCTGTAATCGCCATGTGACCTTCTGCAAGAGAAGATCTGGACTCATCAAGAAGGCTCGCGAGCTCTCTGTTCTCTGCGACGTTGAGCTCGGACTCCTCATCTTCACCAACCGTGGCCGCCTCTACGAGTTTTGCAGCGGAAAT

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGCTGTAATCGCCATGTGACCTTCTGCAAGAGAAGATCTGGACTCATCAAGAAGGCTCGCGAGCTCTCTGTTCTCTGCGACGTTGAGCTCGGACTCCTCATCTTCACCAACCGTGGCCGCCTCTACGAGTTTTGCAGCGGAAAT

Protein sequence

MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

Homology

[Close]

BLAST of MS002959 vs. NCBI nr
Match: XP_022155416.1 (MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 8.9e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. NCBI nr
Match: XP_022155415.1 (MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 8.9e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. NCBI nr
Match: XP_022155417.1 (MADS-box transcription factor 8-like isoform X3 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 8.9e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. NCBI nr
Match: XP_023514717.1 (MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 9.8e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of MS002959 vs. NCBI nr
Match: KAG7014654.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 9.8e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of MS002959 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of MS002959 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS 60
          MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of MS002959 vs. ExPASy Swiss-Prot
Match: Q9SAR1 (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS8 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-19
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]

BLAST of MS002959 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 3.2e-18
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MS002959 vs. ExPASy Swiss-Prot
Match: O04067 (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.2e-18
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MS002959 vs. ExPASy TrEMBL
Match: A0A6J1DME3 (MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. ExPASy TrEMBL
Match: A0A6J1DRL9 (MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
           MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of MS002959 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]

BLAST of MS002959 vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]

BLAST of MS002959 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-20
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS 60
          MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of MS002959 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-20
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS 60
          MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of MS002959 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-20
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS 60
          MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of MS002959 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-20
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of MS002959 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-20
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG 60
          MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

The following BLAST results are available for this feature:

BLAST of MS002959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155416.1	8.9e-26	98.36	MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]	[more]
XP_022155415.1	8.9e-26	98.36	MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]	[more]
XP_022155417.1	8.9e-26	98.36	MADS-box transcription factor 8-like isoform X3 [Momordica charantia]	[more]
XP_023514717.1	9.8e-25	93.44	MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7014654.1	9.8e-25	93.44	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of MS002959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38836	8.3e-19	68.85	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
P29383	8.3e-19	72.88	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
Q9SAR1	8.3e-19	70.00	MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
Q03489	3.2e-18	67.21	Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE...	[more]
O04067	3.2e-18	67.21	Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ...	[more]

BLAST of MS002959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DME3	4.3e-26	98.36	MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1DPA0	4.3e-26	98.36	MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRL9	4.3e-26	98.36	MADS-box protein FLOWERING LOCUS C-like isoform X2 OS=Momordica charantia OX=367...	[more]
A0A6J1KPU7	1.8e-24	91.80	MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4...	[more]
A0A6J1H7I9	2.4e-24	90.16	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of MS002959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03710.1	5.9e-20	72.88	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	5.9e-20	72.88	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	5.9e-20	72.88	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.2	5.9e-20	68.85	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.1	5.9e-20	68.85	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 57.95 coord: 38..59 score: 48.87 coord: 23..38 score: 76.85
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.0E-31 score: 121.4
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 6.3E-23 score: 80.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 29.772474
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..61 e-value: 6.3E-22 score: 79.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..60
None	No IPR available	PANTHER	PTHR48019:SF72	MADS-BOX TRANSCRIPTION FACTOR 6	coord: 1..59
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002959.1	MS002959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity