MS002957 (gene) Bitter gourd (TR) v1

Overview
NameMS002957
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCleavage and polyadenylation specificity factor subunit 1
Locationscaffold595_1: 394407 .. 394585 (+)
RNA-Seq ExpressionMS002957
SyntenyMS002957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGTCCCATCTAATGGAGGTTGGATACAAATAAGGGAATTACCCTTTGATAGGTGGCATATGGAAGTCTTTAAGCTCATTAGGGAAGCTGGTGGAATATTGAAGATCTTTCAAATATAACCATCAATCTAATGGATCCTATGGAGATAATCATCAAGGTAAAGCCAAACAGTACGGGT

mRNA sequence

GTGGTCCCATCTAATGGAGGTTGGATACAAATAAGGGAATTACCCTTTGATAGGTGGCATATGGAAGTCTTTAAGCTCATTAGGGAAGCTGGTGGAATATTGAAGATCTTTCAAACCATCAATCTAATGGATCCTATGGAGATAATCATCAAGGTAAAGCCAAACAGTACGGGT

Coding sequence (CDS)

GTGGTCCCATCTAATGGAGGTTGGATACAAATAAGGGAATTACCCTTTGATAGGTGGCATATGGAAGTCTTTAAGCTCATTAGGGAAGCTGGTGGAATATTGAAGATCTTTCAAACCATCAATCTAATGGATCCTATGGAGATAATCATCAAGGTAAAGCCAAACAGTACGGGT

Protein sequence

VVPSNGGWIQIRELPFDRWHMEVFKLIREAGGILKIFQTINLMDPMEIIIKVKPNSTG
Homology
BLAST of MS002957 vs. NCBI nr
Match: TYK18666.1 (cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1  VVPSNGGWIQIRELPFDRWHMEVFKLIREA-GGILKIF-QTINLMDPMEIIIKVKPNSTG 59
          VVPS GGWI++R +P   W++E F  I++A GG + +  +T +L D +E II++K N +G
Sbjct: 5  VVPSYGGWIKVRGIPLHAWNLESFIQIQDACGGYIDVVRETRDLTDLIEAIIRIKDNYSG 64

BLAST of MS002957 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 2   VPSNGGWIQIRELPFDRWHMEVFKLIRE-AGGILKIF-QTINLMDPMEIIIKVKPNSTG 59
           VPS G WI+IR L  D+W  + FKLI E  GG ++   +T+  MD ME  +KVK N  G
Sbjct: 240 VPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKVKMNKNG 298

BLAST of MS002957 vs. ExPASy TrEMBL
Match: A0A5D3D541 (Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00010 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1  VVPSNGGWIQIRELPFDRWHMEVFKLIREA-GGILKIF-QTINLMDPMEIIIKVKPNSTG 59
          VVPS GGWI++R +P   W++E F  I++A GG + +  +T +L D +E II++K N +G
Sbjct: 5  VVPSYGGWIKVRGIPLHAWNLESFIQIQDACGGYIDVVRETRDLTDLIEAIIRIKDNYSG 64

BLAST of MS002957 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.7e-04
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 1   VVPSNGGWIQIRELPFDRWHMEVFKLIREA-GGILKIF-QTINLMDPMEIIIKVKPNSTG 59
           V+PS GGWI++R +P   W++E F  I +A GG +++  +T  L D  E  IK+K N TG
Sbjct: 281 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTG 340

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK18666.13.1e-0443.33cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. mak... [more]
QWT43305.16.9e-0447.46kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D5411.5e-0443.33Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. m... [more]
A0A5A7TFK75.7e-0443.33DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002957.1MS002957.1mRNA