MS002955 (gene) Bitter gourd (TR) v1

Overview


Name	MS002955
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold595_1: 373979 .. 374395 (-)
RNA-Seq Expression	MS002955
Synteny	MS002955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGGCCGCGAGAAGATCCGCAATCTAGGGTTTTGCATGAGATTTCGTCTCTGCTTATGAAAATTCTCCGATCGCCGCCACCGCCGGTGCCTTTTTCCGATCATGTTCTTGAATTGTCGTCGGTTATTTCATCCTCGTCGGGATTATTGCCTTCGTCGCAGATTACACCGGCTGGACTTGCGTCGCTGCTGCTCGGAATTTCGCTGGCTTTGATGCTCTGTGGATCGGTTACTTTCTTCCTTGGTTTCTTGTTAATGCCTTGGATTCTCGTGTTGGTGATGATTTTCTACGTGGTTGGGATTGTCTCCAGCCTCTCTATGTTGGGACGCTCTATACTTTGTTGTTTCTCCGCTCCAACGCCTCGGAAAGATTTTAATGGCAAGTTTCTTATCTGCCTCTGTTTTCTTATTCTA

mRNA sequence

ATGAGGAGGCCGCGAGAAGATCCGCAATCTAGGGTTTTGCATGAGATTTCGTCTCTGCTTATGAAAATTCTCCGATCGCCGCCACCGCCGGTGCCTTTTTCCGATCATGTTCTTGAATTGTCGTCGGTTATTTCATCCTCGTCGGGATTATTGCCTTCGTCGCAGATTACACCGGCTGGACTTGCGTCGCTGCTGCTCGGAATTTCGCTGGCTTTGATGCTCTGTGGATCGGTTACTTTCTTCCTTGGTTTCTTGTTAATGCCTTGGATTCTCGTGTTGGTGATGATTTTCTACGTGGTTGGGATTGTCTCCAGCCTCTCTATGTTGGGACGCTCTATACTTTGTTGTTTCTCCGCTCCAACGCCTCGGAAAGATTTTAATGGCAAGTTTCTTATCTGCCTCTGTTTTCTTATTCTA

Coding sequence (CDS)

ATGAGGAGGCCGCGAGAAGATCCGCAATCTAGGGTTTTGCATGAGATTTCGTCTCTGCTTATGAAAATTCTCCGATCGCCGCCACCGCCGGTGCCTTTTTCCGATCATGTTCTTGAATTGTCGTCGGTTATTTCATCCTCGTCGGGATTATTGCCTTCGTCGCAGATTACACCGGCTGGACTTGCGTCGCTGCTGCTCGGAATTTCGCTGGCTTTGATGCTCTGTGGATCGGTTACTTTCTTCCTTGGTTTCTTGTTAATGCCTTGGATTCTCGTGTTGGTGATGATTTTCTACGTGGTTGGGATTGTCTCCAGCCTCTCTATGTTGGGACGCTCTATACTTTGTTGTTTCTCCGCTCCAACGCCTCGGAAAGATTTTAATGGCAAGTTTCTTATCTGCCTCTGTTTTCTTATTCTA

Protein sequence

MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAGLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAPTPRKDFNGKFLICLCFLIL

Homology

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BLAST of MS002955 vs. NCBI nr
Match: XP_022155438.1 (uncharacterized protein LOC111022584 isoform X1 [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFNGKFLIC 134
           TPRKDFN +F  C
Sbjct: 122 TPRKDFNAQFFHC 134

[Close]

BLAST of MS002955 vs. NCBI nr
Match: XP_022155442.1 (uncharacterized protein LOC111022584 isoform X4 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 6.2e-59
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFNG 129
           TPRKDFNG
Sbjct: 122 TPRKDFNG 129

[Close]

BLAST of MS002955 vs. NCBI nr
Match: XP_022155440.1 (uncharacterized protein LOC111022584 isoform X2 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFN 128
           TPRKDFN
Sbjct: 122 TPRKDFN 128

[Close]

BLAST of MS002955 vs. NCBI nr
Match: XP_022155441.1 (uncharacterized protein LOC111022584 isoform X3 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFN 128
           TPRKDFN
Sbjct: 122 TPRKDFN 128

[Close]

BLAST of MS002955 vs. NCBI nr
Match: KAG7014655.1 (hypothetical protein SDJN02_24834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 113/138 (81.88%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           M RP++DPQS  LHEISSLL+KILRSPPPPVPF+DHVLELSS ISSSS   PSSQ++P G
Sbjct: 143 MSRPQQDPQSGFLHEISSLLLKILRSPPPPVPFADHVLELSSAISSSSITFPSSQMSPTG 202

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
            A+LLLGISLALMLCGSVTFFLGF+LMPWILV VMIFY+VGIVSS+SMLGRSILCCF+AP
Sbjct: 203 FAALLLGISLALMLCGSVTFFLGFMLMPWILVFVMIFYMVGIVSSVSMLGRSILCCFTAP 262

Query: 121 TPRKDFNGKFLICLCFLI 139
           TPRKDF+G+FL CLCFL+
Sbjct: 263 TPRKDFHGEFLFCLCFLV 280

[Close]

BLAST of MS002955 vs. ExPASy TrEMBL
Match: A0A6J1DMY8 (uncharacterized protein LOC111022584 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.9e-60
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFNGKFLIC 134
           TPRKDFN +F  C
Sbjct: 122 TPRKDFNAQFFHC 134

[Close]

BLAST of MS002955 vs. ExPASy TrEMBL
Match: A0A6J1DPD1 (uncharacterized protein LOC111022584 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFNG 129
           TPRKDFNG
Sbjct: 122 TPRKDFNG 129

[Close]

BLAST of MS002955 vs. ExPASy TrEMBL
Match: A0A6J1DMF9 (uncharacterized protein LOC111022584 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFN 128
           TPRKDFN
Sbjct: 122 TPRKDFN 128

[Close]

BLAST of MS002955 vs. ExPASy TrEMBL
Match: A0A6J1DRN9 (uncharacterized protein LOC111022584 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 60
           MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSGLLPSSQITPAG 61

Query: 61  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 120
           LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP
Sbjct: 62  LASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSAP 121

Query: 121 TPRKDFN 128
           TPRKDFN
Sbjct: 122 TPRKDFN 128

[Close]

BLAST of MS002955 vs. ExPASy TrEMBL
Match: A0A1S3CB48 (uncharacterized protein LOC103498845 OS=Cucumis melo OX=3656 GN=LOC103498845 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 108/129 (83.72%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSG-LLPSSQITPA 60
           M   ++DP+S V HEISSLL+KILRSPPPPVPFSDHVLELSSVISSSS  +LPSSQ+TPA
Sbjct: 1   MNMAQQDPRSGVFHEISSLLLKILRSPPPPVPFSDHVLELSSVISSSSSRILPSSQMTPA 60

Query: 61  GLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSA 120
           G A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYVVGIVSSLS+LGRS++CCF+A
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSSLSVLGRSLICCFTA 120

Query: 121 PTPRKDFNG 129
           PTPRKDF+G
Sbjct: 121 PTPRKDFHG 129

[Close]

BLAST of MS002955 vs. TAIR 10
Match: AT1G27290.1 (unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLE---------LSSVISSSSGLL 60
           MRR R++ QSRV +++SSL++ +LRSPP P+   DH  +          S   SSSS  L
Sbjct: 2   MRRQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSL 61

Query: 61  PSSQITPAGLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGR 120
             + I+P+G ASLLLGIS+ALMLCGSVTFF+GFLLMPW+L L+++FYV GIVS++SM+GR
Sbjct: 62  --AHISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGR 121

[Close]

BLAST of MS002955 vs. TAIR 10
Match: AT1G27290.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 1   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLE---------LSSVISSSSGLL 60
           MRR R++ QSRV +++SSL++ +LRSPP P+   DH  +          S   SSSS  L
Sbjct: 2   MRRQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSL 61

Query: 61  PSSQITPAGLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGR 120
             + I+P+G ASLLLGIS+ALMLCGSVTFF+GFLLMPW+L L+++FYV GIVS++SM+GR
Sbjct: 62  --AHISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGR 121

The following BLAST results are available for this feature:

BLAST of MS002955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155438.1	1.6e-59	96.99	uncharacterized protein LOC111022584 isoform X1 [Momordica charantia]	[more]
XP_022155442.1	6.2e-59	100.00	uncharacterized protein LOC111022584 isoform X4 [Momordica charantia]	[more]
XP_022155440.1	4.0e-58	100.00	uncharacterized protein LOC111022584 isoform X2 [Momordica charantia]	[more]
XP_022155441.1	4.0e-58	100.00	uncharacterized protein LOC111022584 isoform X3 [Momordica charantia]	[more]
KAG7014655.1	5.1e-53	81.88	hypothetical protein SDJN02_24834, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS002955 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMY8	7.9e-60	96.99	uncharacterized protein LOC111022584 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DPD1	3.0e-59	100.00	uncharacterized protein LOC111022584 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DMF9	2.0e-58	100.00	uncharacterized protein LOC111022584 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRN9	2.0e-58	100.00	uncharacterized protein LOC111022584 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CB48	1.4e-48	83.72	uncharacterized protein LOC103498845 OS=Cucumis melo OX=3656 GN=LOC103498845 PE=...	[more]

BLAST of MS002955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27290.1	2.7e-28	55.81	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G27290.2	2.7e-28	55.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34781	TRANSMEMBRANE PROTEIN	coord: 1..128
None	No IPR available	PANTHER	PTHR34781:SF2	TRANSMEMBRANE PROTEIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002955.1	MS002955.1	mRNA