MS002908 (gene) Bitter gourd (TR) v1

Overview
NameMS002908
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP synthase subunit a, chloroplastic
Locationscaffold359: 584647 .. 584736 (-)
RNA-Seq ExpressionMS002908
SyntenyMS002908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTTGAGTAAAACTCAAATTGGCGAAGAATATGGTTCCAGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTATTTTTTTCAAAT

mRNA sequence

GACTTGAGTAAAACTCAAATTGGCGAAGAATATGGTTCCAGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTATTTTTTTCAAAT

Coding sequence (CDS)

GACTTGAGTAAAACTCAAATTGGCGAAGAATATGGTTCCAGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTATTTTTTTCAAAT

Protein sequence

DLSKTQIGEEYGSRVPFIGTMFLFILFFSN
Homology
[Close]
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match: Q0ZJ32 (ATP synthase subunit a, chloroplastic OS=Vitis vinifera OX=29760 GN=atpI PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.2e-06
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           D+SKTQIGEEYGS VPFIGTMFLFI
Sbjct: 81  DVSKTQIGEEYGSWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match: Q4FGF8 (ATP synthase subunit a, chloroplastic OS=Acorus americanus OX=263995 GN=atpI PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYG  VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGPWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match: Q3V546 (ATP synthase subunit a, chloroplastic OS=Acorus calamus OX=4465 GN=atpI PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYG  VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGPWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match: A1EA02 (ATP synthase subunit a, chloroplastic OS=Agrostis stolonifera OX=63632 GN=atpI PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYG  VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGPWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match: B3TN45 (ATP synthase subunit a, chloroplastic OS=Brachypodium distachyon OX=15368 GN=atpI PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-06
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYG  VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGPWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy TrEMBL
Match: A0A2S1NWS7 (ATP synthase subunit a, chloroplastic OS=Asclepias pringlei OX=659992 GN=atpI PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-04
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFILFFSN 31
           D+SKTQIGEEYG  VPFIGTMFLFI FFSN
Sbjct: 78  DVSKTQIGEEYGPWVPFIGTMFLFI-FFSN 106

[Close]
BLAST of MS002908 vs. ExPASy TrEMBL
Match: A0A251SDA8 (Putative ATPase, F0 complex, subunit A OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0428011 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFILF 28
           D+SKTQIGEEYG  VPFIGTMFLFILF
Sbjct: 81  DVSKTQIGEEYGPWVPFIGTMFLFILF 107

[Close]
BLAST of MS002908 vs. ExPASy TrEMBL
Match: H2F511 (ATP synthase subunit a, chloroplastic OS=Dichelostemma congestum OX=158492 GN=atpI PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.6e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYGS VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGSWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy TrEMBL
Match: A0A1L2BTF3 (ATP synthase subunit a, chloroplastic OS=Aletris spicata OX=119992 GN=atpI PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.6e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYGS VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGSWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. ExPASy TrEMBL
Match: A0A1L2BTP2 (ATP synthase subunit a, chloroplastic OS=Aletris fauriei OX=1112724 GN=atpI PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.6e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           DLSKTQIGEEYGS VPFIGTMFLFI
Sbjct: 81  DLSKTQIGEEYGSWVPFIGTMFLFI 105

[Close]
BLAST of MS002908 vs. TAIR 10
Match: ATCG00150.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-06
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   DLSKTQIGEEYGSRVPFIGTMFLFI 26
           D+SKTQIGEEYG  VPFIGT+FLFI
Sbjct: 83  DVSKTQIGEEYGPWVPFIGTLFLFI 107

The following BLAST results are available for this feature:
BLAST of MS002908 vs.
Match NameE-valueIdentityDescription
BLAST of MS002908 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0ZJ325.2e-0692.00ATP synthase subunit a, chloroplastic OS=Vitis vinifera OX=29760 GN=atpI PE=3 SV... [more]
Q4FGF88.9e-0692.00ATP synthase subunit a, chloroplastic OS=Acorus americanus OX=263995 GN=atpI PE=... [more]
Q3V5468.9e-0692.00ATP synthase subunit a, chloroplastic OS=Acorus calamus OX=4465 GN=atpI PE=3 SV=... [more]
A1EA028.9e-0692.00ATP synthase subunit a, chloroplastic OS=Agrostis stolonifera OX=63632 GN=atpI P... [more]
B3TN458.9e-0692.00ATP synthase subunit a, chloroplastic OS=Brachypodium distachyon OX=15368 GN=atp... [more]
BLAST of MS002908 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2S1NWS76.6e-0486.67ATP synthase subunit a, chloroplastic OS=Asclepias pringlei OX=659992 GN=atpI PE... [more]
A0A251SDA86.6e-0488.89Putative ATPase, F0 complex, subunit A OS=Helianthus annuus OX=4232 GN=HannXRQ_C... [more]
H2F5118.6e-0496.00ATP synthase subunit a, chloroplastic OS=Dichelostemma congestum OX=158492 GN=at... [more]
A0A1L2BTF38.6e-0496.00ATP synthase subunit a, chloroplastic OS=Aletris spicata OX=119992 GN=atpI PE=3 ... [more]
A0A1L2BTP28.6e-0496.00ATP synthase subunit a, chloroplastic OS=Aletris fauriei OX=1112724 GN=atpI PE=3... [more]
BLAST of MS002908 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00150.13.1e-0684.00ATPase, F0 complex, subunit A protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002908.1MS002908.1mRNA