MS002903 (gene) Bitter gourd (TR) v1

Overview
NameMS002903
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionStress-associated endoplasmic reticulum protein 2-like
Locationscaffold359: 562447 .. 562653 (-)
RNA-Seq ExpressionMS002903
SyntenyMS002903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGACCACTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCGAGAAGAATATCAGCAAAAGGGGATTAGTTCCAGAGCAAGCCTCGTCCAAGAAGGGATACGACTACCCCGTTGGTCCCATTCTTCTAGGGTTTTTCCTCTTCGTCGTTATCGGATCATGTACGCTTTCTTCCTCTTCTTCTTCTTCTTCTTCTAATTTCTCA

mRNA sequence

CAGACCACTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCGAGAAGAATATCAGCAAAAGGGGATTAGTTCCAGAGCAAGCCTCGTCCAAGAAGGGATACGACTACCCCGTTGGTCCCATTCTTCTAGGGTTTTTCCTCTTCGTCGTTATCGGATCATGTACGCTTTCTTCCTCTTCTTCTTCTTCTTCTTCTAATTTCTCA

Coding sequence (CDS)

CAGACCACTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCGAGAAGAATATCAGCAAAAGGGGATTAGTTCCAGAGCAAGCCTCGTCCAAGAAGGGATACGACTACCCCGTTGGTCCCATTCTTCTAGGGTTTTTCCTCTTCGTCGTTATCGGATCATGTACGCTTTCTTCCTCTTCTTCTTCTTCTTCTTCTAATTTCTCA

Protein sequence

QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTLSSSSSSSSSNFS
Homology
BLAST of MS002903 vs. NCBI nr
Match: XP_022142584.1 (probable stress-associated endoplasmic reticulum protein [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS 55
          TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS
Sbjct: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS 54

BLAST of MS002903 vs. NCBI nr
Match: EXB29528.1 (hypothetical protein L484_010586 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 1   QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTLSSS 60
           +TTSKRVAE+KVAKF++NI+KRG VPE  SSKKGYD+PVGPILLGFF+FVVIGSC   SS
Sbjct: 36  KTTSKRVAEKKVAKFQRNITKRGSVPE-TSSKKGYDFPVGPILLGFFIFVVIGSCIALSS 95

Query: 61  SSSSSSNFS 70
            SS SS F+
Sbjct: 96  YSSLSSPFN 103

BLAST of MS002903 vs. NCBI nr
Match: KAG2688594.1 (hypothetical protein I3760_09G103400 [Carya illinoinensis])

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-15
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSC 56
          TTSKR+AERKVAKF+KN++KRG VPE  S+KKGYDYPVGPI+LGFF+FVVIGSC
Sbjct: 2  TTSKRLAERKVAKFQKNVTKRGSVPE-TSTKKGYDYPVGPIVLGFFVFVVIGSC 54

BLAST of MS002903 vs. NCBI nr
Match: RWV97813.1 (hypothetical protein GW17_00039376 [Ensete ventricosum] >RWW44880.1 hypothetical protein BHE74_00049334 [Ensete ventricosum] >RZS07044.1 hypothetical protein BHM03_00037797 [Ensete ventricosum])

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 42/56 (75.00%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCT 57
          QTTS+R+A+RKVAKF+KNI+KRG +PE +++KKG DYPVGPI+LGFF+FVVIGSCT
Sbjct: 8  QTTSRRLADRKVAKFQKNITKRGSIPE-STAKKGNDYPVGPIVLGFFIFVVIGSCT 62

BLAST of MS002903 vs. NCBI nr
Match: RRT45741.1 (hypothetical protein B296_00028165 [Ensete ventricosum])

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 42/56 (75.00%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCT 57
          QTTS+R+A+RKVAKF+KNI+KRG +PE +++KKG DYPVGPI+LGFF+FVVIGSCT
Sbjct: 8  QTTSRRLADRKVAKFQKNITKRGSIPE-STAKKGNDYPVGPIVLGFFIFVVIGSCT 62

BLAST of MS002903 vs. ExPASy TrEMBL
Match: A0A6J1CLW6 (probable stress-associated endoplasmic reticulum protein OS=Momordica charantia OX=3673 GN=LOC111012663 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS 55
          TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS
Sbjct: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGS 54

BLAST of MS002903 vs. ExPASy TrEMBL
Match: W9QNJ3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010586 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 1   QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTLSSS 60
           +TTSKRVAE+KVAKF++NI+KRG VPE  SSKKGYD+PVGPILLGFF+FVVIGSC   SS
Sbjct: 36  KTTSKRVAEKKVAKFQRNITKRGSVPE-TSSKKGYDFPVGPILLGFFIFVVIGSCIALSS 95

Query: 61  SSSSSSNFS 70
            SS SS F+
Sbjct: 96  YSSLSSPFN 103

BLAST of MS002903 vs. ExPASy TrEMBL
Match: A0A426Y2H4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00028165 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 42/56 (75.00%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCT 57
          QTTS+R+A+RKVAKF+KNI+KRG +PE +++KKG DYPVGPI+LGFF+FVVIGSCT
Sbjct: 8  QTTSRRLADRKVAKFQKNITKRGSIPE-STAKKGNDYPVGPIVLGFFIFVVIGSCT 62

BLAST of MS002903 vs. ExPASy TrEMBL
Match: A0A444DI91 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00039376 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 42/56 (75.00%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCT 57
          QTTS+R+A+RKVAKF+KNI+KRG +PE +++KKG DYPVGPI+LGFF+FVVIGSCT
Sbjct: 8  QTTSRRLADRKVAKFQKNITKRGSIPE-STAKKGNDYPVGPIVLGFFIFVVIGSCT 62

BLAST of MS002903 vs. ExPASy TrEMBL
Match: A0A7J8WPS7 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_018353 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  QTTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTL 58
          QTTS+R+A+RKV KFEKNI+KRG VPE  S+KKG DYPVGP+LLGFF+FVVIGSC +
Sbjct: 22 QTTSRRLADRKVLKFEKNITKRGAVPE-TSTKKGKDYPVGPMLLGFFVFVVIGSCKI 77

BLAST of MS002903 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTLSSSS 61
          TTSKR+A+RK+ KF+KNI KRG VPE  ++KKG DYPVGPILLGFF+FVVIGS       
Sbjct: 2  TTSKRLADRKIEKFDKNILKRGFVPE-TTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 61

Query: 62 SSSSSNFS 70
          +++S   +
Sbjct: 62 TATSGGMA 68

BLAST of MS002903 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 2  TTSKRVAERKVAKFEKNISKRGLVPEQASSKKGYDYPVGPILLGFFLFVVIGSCTLSSSS 61
          TTSKR+A+RK+ KF+KNI KRG VPE  ++KKG DYPVGPILLGFF+FVVIGS       
Sbjct: 2  TTSKRLADRKIEKFDKNILKRGFVPE-TTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 61

Query: 62 SSSSSNFS 70
          +++S   +
Sbjct: 62 TATSGGMA 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142584.13.1e-19100.00probable stress-associated endoplasmic reticulum protein [Momordica charantia][more]
EXB29528.13.2e-1675.36hypothetical protein L484_010586 [Morus notabilis][more]
KAG2688594.18.0e-1581.48hypothetical protein I3760_09G103400 [Carya illinoinensis][more]
RWV97813.14.0e-1475.00hypothetical protein GW17_00039376 [Ensete ventricosum] >RWW44880.1 hypothetical... [more]
RRT45741.14.0e-1475.00hypothetical protein B296_00028165 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CLW61.5e-19100.00probable stress-associated endoplasmic reticulum protein OS=Momordica charantia ... [more]
W9QNJ31.6e-1675.36Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010586 PE=3 SV=1[more]
A0A426Y2H41.9e-1475.00Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00028165 PE=3 SV=1[more]
A0A444DI911.9e-1475.00Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00039376 PE=3 SV=1[more]
A0A7J8WPS75.6e-1475.44Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_018353 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G27350.11.4e-1460.29Ribosome associated membrane protein RAMP4 [more]
AT1G27330.11.4e-1460.29Ribosome associated membrane protein RAMP4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 4..55
e-value: 2.2E-19
score: 69.2
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 2..65
NoneNo IPR availablePANTHERPTHR15601:SF23OS11G0637501 PROTEINcoord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002903.1MS002903.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum