MS002874 (gene) Bitter gourd (TR) v1

Overview


Name	MS002874
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Location	scaffold359: 380144 .. 381328 (+)
RNA-Seq Expression	MS002874
Synteny	MS002874

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGGTTGGAATGACTTTCCATACCCGAAGATTTTTGTTTCTAATTCTTTGCCTGGTCTTTTATTGAAACACTAGATTTCTTTTGACCAACTTTTGCGTTTTTCTCCTGCAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGACCTCTGTTGATCTTTCAAATGTGGATTTGATAACTGAGATTGATATCTCAGCTGGTAATGCTTCAAGGTAGAATTAGATTATCCTGAACATTCGACCATGCATTAGATGGTTCACGGTAACTTGAAATTGTTATGATAACCTGAAACCCAACCAACTGGTTCACAAAATTGAACTTTGTTTAATTGTTGCTTTTAGAGAATGTTATTATGTTAAATTTAATCCTATTAGCAGTCCAGATGAAATTTGATTACGGAAGGGGCTCTCACTTGTAACTAATTCCTGCACGGGAAAAATAGGGAATGACTGTAGAGAATAATTGAAAGATAATTGTTTTGGGGTTGGTTTGTGTATTTTTAATATTGTTAAAGATGGGGCATCATTGTCATGATTTGGTGTTTCATGAGCGACGATAATATTACCAATTTGAGTTCTAAGTAAGAGTATGTTTTGGCATGTTTTTTTTTAATATTCCATTAATTTCAACTGGTCAAAATAGTTATCTATTAATATTCCATTAATTTCAACTGGTCAAAATAGTTATCTAGTGGGCTATACGTTAAAAACATTTTTCGAAAATTTCAAAAGCACTCCTTTTTTCTTTTTGGAAGAAGCCATACTTGTTTCTCTGCCCCTCCTAGTAAAGTAAGTGTTTCCATTTATAACCATATAAATGCACTCCTAGATTCCACCTAAAATCTCTTTGAATTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAATATCAAGTGAAAGTGGAAGATGCT

mRNA sequence

ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAATATCAAGTGAAAGTGGAAGATGCT

Coding sequence (CDS)

ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAATATCAAGTGAAAGTGGAAGATGCT

Protein sequence

MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA

Homology

[Close]

BLAST of MS002874 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 2.8e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]

BLAST of MS002874 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 6.2e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]

BLAST of MS002874 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]

BLAST of MS002874 vs. NCBI nr
Match: XP_022973172.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima] >XP_022973173.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI KLDGMKQTIDEYQVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]

BLAST of MS002874 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]

BLAST of MS002874 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.3e-46
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of MS002874 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]

BLAST of MS002874 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.7e-60
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]

BLAST of MS002874 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI KLDGMKQTIDEYQVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]

BLAST of MS002874 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]

BLAST of MS002874 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.2e-54
Identity = 111/140 (79.29%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]

BLAST of MS002874 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.8e-47
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:

BLAST of MS002874 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142440.1	2.8e-60	100.00	mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP...	[more]
XP_023520392.1	6.2e-60	99.15	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep...	[more]
XP_022927640.1	1.4e-59	98.31	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos...	[more]
XP_022973172.1	1.5e-58	97.46	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita max...	[more]
XP_008442051.1	7.6e-58	95.76	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]...	[more]

BLAST of MS002874 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ID77	5.3e-46	75.68	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O...	[more]

BLAST of MS002874 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKY4	1.4e-60	100.00	Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX...	[more]
A0A6J1EPJ1	6.7e-60	98.31	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=...	[more]
A0A6J1I6T5	7.4e-59	97.46	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36...	[more]
A0A1S3B5G7	3.7e-58	95.76	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0L450	7.2e-54	79.29	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365...	[more]

BLAST of MS002874 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01435.1	3.8e-47	75.68	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..118
None	No IPR available	GENE3D	1.10.287.3490		coord: 7..75 e-value: 1.1E-6 score: 31.0
None	No IPR available	PANTHER	PTHR22890:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11	coord: 1..114
IPR019404	Mediator complex, subunit Med11	PFAM	PF10280	Med11	coord: 8..111 e-value: 6.0E-14 score: 52.7
IPR019404	Mediator complex, subunit Med11	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002874.1	MS002874.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity