MS002865 (gene) Bitter gourd (TR) v1

Overview
NameMS002865
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein CLAVATA 3
Locationscaffold359: 288156 .. 288290 (+)
RNA-Seq ExpressionMS002865
SyntenyMS002865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA

mRNA sequence

ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA

Coding sequence (CDS)

ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA

Protein sequence

MLREMKKKMGVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP
Homology
BLAST of MS002865 vs. NCBI nr
Match: KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 5.6e-09
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1  MLREMKKKMGVVAG----GPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          MLREM K++ V  G       EWDQLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 48 MLREMVKELEVDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96

BLAST of MS002865 vs. NCBI nr
Match: XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   MLREMKKKMGVVAGGPP------EWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
           ML+EMKK+M     G        EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 60  MLQEMKKEMEEGVDGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110

BLAST of MS002865 vs. NCBI nr
Match: KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   MLREMKKKM------GVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
           ML EMKK+M      G   G   EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 59  MLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109

BLAST of MS002865 vs. NCBI nr
Match: KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MLREMKKKMGVVAGG------PPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          M+ EMKK+M     G        EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 5  MIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

BLAST of MS002865 vs. NCBI nr
Match: KAG5566490.1 (hypothetical protein RHGRI_002148 [Rhododendron griersonianum])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 10 GVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          G    G   WDQLR VP+GPDPLHH+GG+PKKPRTP
Sbjct: 60 GYGGAGSETWDQLRGVPAGPDPLHHHGGSPKKPRTP 95

BLAST of MS002865 vs. ExPASy TrEMBL
Match: A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MLREMKKKMGVVAGG------PPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          M+ EMKK+M     G        EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 5  MIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

BLAST of MS002865 vs. ExPASy TrEMBL
Match: A0A6P3ZEB5 (protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 19 WD-QLRRVPSGPDPLHHNGGTPKKPRTP 46
          WD QLR+VPSGPDPLHHNG +PKKPRTP
Sbjct: 60 WDYQLRKVPSGPDPLHHNGNSPKKPRTP 87

BLAST of MS002865 vs. ExPASy TrEMBL
Match: A0A1U8Q0C1 (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 14  GGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
           G    WD LRRVPSGPDPLHHNGG+PKKP+TP
Sbjct: 70  GNLVSWD-LRRVPSGPDPLHHNGGSPKKPQTP 100

BLAST of MS002865 vs. ExPASy TrEMBL
Match: A0A6I9U546 (protein CLAVATA 3 OS=Sesamum indicum OX=4182 GN=LOC105170063 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 7  KKMGVVAGGP-------PEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          K+MG+  G P       PE  +LRRVP+GPDPLHHNG  PKKPRTP
Sbjct: 47 KQMGLKNGAPKLGNEEMPEDWELRRVPAGPDPLHHNGQDPKKPRTP 92

BLAST of MS002865 vs. ExPASy TrEMBL
Match: A0A072UL07 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0

Query: 19 WDQLRRVPSGPDPLHHNGGTPKKPRTP 46
          WDQLR++PSGPDPLHHNGGTP KP TP
Sbjct: 50 WDQLRKIPSGPDPLHHNGGTP-KPETP 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6583691.15.6e-0971.43hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038877536.11.6e-0866.67protein CLAVATA 3 [Benincasa hispida][more]
KAE8652825.12.1e-0868.63hypothetical protein Csa_022700, partial [Cucumis sativus][more]
KAA0054350.12.3e-0764.71protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu... [more]
KAG5566490.11.3e-0569.44hypothetical protein RHGRI_002148 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UGG11.1e-0764.71Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00... [more]
A0A6P3ZEB51.2e-0485.71protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1[more]
A0A1U8Q0C11.2e-0478.13uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329... [more]
A0A6I9U5461.2e-0460.87protein CLAVATA 3 OS=Sesamum indicum OX=4182 GN=LOC105170063 PE=4 SV=1[more]
A0A072UL071.5e-0485.19Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002865.1MS002865.1mRNA