MS002848 (gene) Bitter gourd (TR) v1

Overview
NameMS002848
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold359: 189731 .. 189919 (+)
RNA-Seq ExpressionMS002848
SyntenyMS002848
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAGACCTTTCTGGCTTCACTCAAGAGACGGTATTTTTTCAGTAAAGTCTATAAAATCTAAGCTTGCTGAAGATTCTTTTGCTCCAATTTCTGCTACCTTTGCTAAGCTGTGGAGTTTATACTTTCCTAAAAAATGCAAGTTTTTTCTATGGTGCGTCTTCCATCATGGTATTAACACATTTGATAAG

mRNA sequence

GACAGACCTTTCTGGCTTCACTCAAGAGACGGTATTTTTTCAGTAAAGTCTATAAAATCTAAGCTTGCTGAAGATTCTTTTGCTCCAATTTCTGCTACCTTTGCTAAGCTGTGGAGTTTATACTTTCCTAAAAAATGCAAGTTTTTTCTATGGTGCGTCTTCCATCATGGTATTAACACATTTGATAAG

Coding sequence (CDS)

GACAGACCTTTCTGGCTTCACTCAAGAGACGGTATTTTTTCAGTAAAGTCTATAAAATCTAAGCTTGCTGAAGATTCTTTTGCTCCAATTTCTGCTACCTTTGCTAAGCTGTGGAGTTTATACTTTCCTAAAAAATGCAAGTTTTTTCTATGGTGCGTCTTCCATCATGGTATTAACACATTTGATAAG

Protein sequence

DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
Homology
[Close]
BLAST of MS002848 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  I
Sbjct: 739 KPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCI 798

Query: 62  NTFDK 64
           NT D+
Sbjct: 799 NTADR 803

[Close]
BLAST of MS002848 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  I
Sbjct: 833 KPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCI 892

Query: 62  NTFDK 64
           NT D+
Sbjct: 893 NTADR 897

[Close]
BLAST of MS002848 vs. NCBI nr
Match: TYK10356.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 1   DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHH 60
           D P W+ + DG +SV S+K  L +     ++     TF  LW    PKKCKFF+W + + 
Sbjct: 679 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 738

Query: 61  GINTFDK 64
            +NT D+
Sbjct: 739 SVNTADQ 745

[Close]
BLAST of MS002848 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 2    RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
            +P W  + + IF   S+K  +AE   +P +     +  LW + FPKKCKFF+W + H  I
Sbjct: 941  KPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 1000

Query: 62   NTFDK 64
            NT D+
Sbjct: 1001 NTADR 1005

[Close]
BLAST of MS002848 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   S+K  L+E   +P +     +  LW + FPKKCKFF+W + H  I
Sbjct: 284 KPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 343

Query: 62  NTFDK 64
           NT D+
Sbjct: 344 NTADR 348

[Close]
BLAST of MS002848 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  I
Sbjct: 833 KPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCI 892

Query: 62  NTFDK 64
           NT D+
Sbjct: 893 NTADR 897

[Close]
BLAST of MS002848 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  I
Sbjct: 739 KPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCI 798

Query: 62  NTFDK 64
           NT D+
Sbjct: 799 NTADR 803

[Close]
BLAST of MS002848 vs. ExPASy TrEMBL
Match: A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 1   DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHH 60
           D P W+ + DG +SV S+K  L +     ++     TF  LW    PKKCKFF+W + + 
Sbjct: 679 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 738

Query: 61  GINTFDK 64
            +NT D+
Sbjct: 739 SVNTADQ 745

[Close]
BLAST of MS002848 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 2    RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
            +P W  + + IF   S+K  +AE   +P +     +  LW + FPKKCKFF+W + H  I
Sbjct: 941  KPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 1000

Query: 62   NTFDK 64
            NT D+
Sbjct: 1001 NTADR 1005

[Close]
BLAST of MS002848 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-05
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 2   RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGI 61
           +P W  + + IF   S+K  L+E   +P +     +  LW + FPKKCKFF+W + H  I
Sbjct: 284 KPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 343

Query: 62  NTFDK 64
           NT D+
Sbjct: 344 NTADR 348

The following BLAST results are available for this feature:
BLAST of MS002848 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044556.11.8e-0541.54LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.11.8e-0541.54LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK10356.16.8e-0537.31LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.11.2e-0438.46LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0044451.12.0e-0438.46LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of MS002848 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS002848 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIB88.7e-0641.54LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR158.7e-0641.54LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CJ083.3e-0537.31LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I75.6e-0538.46LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA79.6e-0538.46LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MS002848 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002848.1MS002848.1mRNA