MS002827 (gene) Bitter gourd (TR) v1

Overview
NameMS002827
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCopper ion binding protein
Locationscaffold359: 37003 .. 39117 (-)
RNA-Seq ExpressionMS002827
SyntenyMS002827
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCGCGGACGGCGGCGAGGATTGTTTCTCGAAGGTTCTCGAGCAGCGGTAAGATACTTAGCGAGGAAGAGAAGGCTGCCGAGAATGTCTACATCAAGGTGACCGTCTGGAGCCTCCGACCTGTGATTTTTGTGTGTTTGCCAAATGATTGTGTGCTTTTTAAAAATTTTTTTTTTGTTAGGTCGCGTTGGTTGTTTCATTCATTATAAATGATGAAATGGATAGAAAAGTATGGCGAATTTACTTGCTGTAAATATGTAGTATAGCTTGTTTTGAGTTTATCGAAGGATAGAGTTCTACAGTTTCGAATGAGTCTACTGTTCTCTTTTATTTTTCTGCTGTTCATTTTAATCTTTATTAGTATTATTTGGTATTAGAGACAGTTTCAAAGATATTGAGCGATCGGAGTCCCTTTGTGTTGGCGGCGAAAGTTCCTACGTCTGTTCGTAGGATCGGTACTATAATTTCAAGAGCGGTATTGCAGTATTTGGTGTCAAATAAAATGGCTTCGATCCTAATAGTGACGTGTGCAAAGATATCTTTCCCCTTTGAGGATGAGAGTTTTGTTCAAGGGAGGAGGAAAAAAACGATCATGTTTTACTTTATCAACTAGGCTTATCTTTAATTTTGAATAATTGGGTATTTAGATATGTTTTTAGGTTCGCATTTATCTTCTTATTAGTGATTTTCCTAATTTTAGGGATTTCTAATAGTTTGCTGTTTTTCATATGTTATCATATTTGAATGATGAAATGAGCGACAAAGTATGGAGAATTCACTTATGGGAAATGTACATGGTTTTGCCTTTTGATTTATTTGAAGAGTCAATAATGGCGGTCTAGACTCCCTCTAACAAGTGTACCATCCTTTTAAGTTTCTATTGCTCAATTGTATTTTTAATTTAGTATAGGCTCATACCTTATTTTGTCTAGTGGGTTAGATGGTGTTATTGAAGTAGAAGATTGGTTTTTGGATATTGCCATAGAGATTCATGACTTGGGAATTAAAACTACTTCTTTGTGGAGTTCTGTAGTTATTCATTTTGACATTACAATATAACTGAAAGCTTTTTCTAGTTAGTTGTATTTTCATTGTTCTTAATGAAAGTTTAGTTTATCAACATATATAACTGAATTTTTTAATGTGGGACATTTGTCTAAGTTGAAACATCAAATGGCGAACTCTTGGAGATTTTTCAACGCCAAGAGTTTGTTTTATGTATGAGTGTACATCCCACCTTTACCATCTACTTTCTTATGATGTCTTTAGTACATTTTCTCCATTCGTAGCTTATTGATTGTGATTTTGCAGAAAACTGAACAAGAGAAACTGGAGAAGCTTGCACGCAAGGTATGCTTGTAGATCCTTAAAAATTCCGCTTGGGAACATGAGTTTGAAATTATTTGGATCTTGGATAATCTAGCTTTTCAGACTAAAATTTTATAATTCTTTTCATTGTTGTAAAACTATAATATTATCTTATTGAAGTAAAATTTTAGATGTCCTATGTAATTGACAAGGTTTGCAGTGAAAATAGATTTATCATTTTTATTGGGTAAACAGAGCCATTGATTGTGGTTTTAAAACATCTTATGCTTATACTAAGTGTTTTGATGGTTCTACGATATTATGTGAACCAATTTTTCAACAAATTAATTTTTGGAATGCTCATATGAGAGTGAACATTGATGAATGCCAAAGCAACTTGATTAAAGTAAATGGAAGTCGAAAACCACACTGGCCATTTATTTAGCTCCATTATCATATTTACTTTCCACTCGCTGCGGTGAATTCCTTGTACTTGAACATCTAGGTCTGTGGTAATATAATTTTATTTTCTTGAGTGAGAGTTAGATGTTCTAATCCTCCAGGCTACAAATGCCGAATGTTTCTAGGGACCTAAACCAGAAGAAAAGCCGGGAGGTTCAGCGGCTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGCATCAGCATCAGCATCAGGAGCATCAACAGAGAAGATATCTACTGACAAACACCGCAATTACGCTGTTGTAGCGGGAACTGTGACTATTCTTGGTGCAGTTGGCTGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTC

mRNA sequence

ATGGCAGCAGCGCGGACGGCGGCGAGGATTGTTTCTCGAAGGTTCTCGAGCAGCGGTAAGATACTTAGCGAGGAAGAGAAGGCTGCCGAGAATGTCTACATCAAGAAAACTGAACAAGAGAAACTGGAGAAGCTTGCACGCAAGGGACCTAAACCAGAAGAAAAGCCGGGAGGTTCAGCGGCTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGCATCAGCATCAGCATCAGGAGCATCAACAGAGAAGATATCTACTGACAAACACCGCAATTACGCTGTTGTAGCGGGAACTGTGACTATTCTTGGTGCAGTTGGCTGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTC

Coding sequence (CDS)

ATGGCAGCAGCGCGGACGGCGGCGAGGATTGTTTCTCGAAGGTTCTCGAGCAGCGGTAAGATACTTAGCGAGGAAGAGAAGGCTGCCGAGAATGTCTACATCAAGAAAACTGAACAAGAGAAACTGGAGAAGCTTGCACGCAAGGGACCTAAACCAGAAGAAAAGCCGGGAGGTTCAGCGGCTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGCATCAGCATCAGCATCAGGAGCATCAACAGAGAAGATATCTACTGACAAACACCGCAATTACGCTGTTGTAGCGGGAACTGTGACTATTCTTGGTGCAGTTGGCTGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTC

Protein sequence

MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSAADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV
Homology
BLAST of MS002827 vs. NCBI nr
Match: XP_022142661.1 (uncharacterized protein At2g27730, mitochondrial [Momordica charantia] >XP_022142662.1 uncharacterized protein At2g27730, mitochondrial [Momordica charantia])

HSP 1 Score: 198.4 bits (503), Expect = 3.6e-47
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA
Sbjct: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           ADSIPSG    SASASASGAS EKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV
Sbjct: 61  ADSIPSG----SASASASGASAEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 115

BLAST of MS002827 vs. NCBI nr
Match: XP_008461298.1 (PREDICTED: uncharacterized protein At2g27730, mitochondrial [Cucumis melo] >KAA0035485.1 uncharacterized protein E6C27_scaffold285G001350 [Cucumis melo var. makuwa] >TYK31040.1 uncharacterized protein E5676_scaffold455G002960 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 110/123 (89.43%), Postives = 114/123 (92.68%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEK G S 
Sbjct: 1   MAAARTAARIFSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKIGESV 60

Query: 61  ADSIP----SGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKP 120
           ADS+P    SGS+SASASASASGAS+EKISTDK RNYAVVAGTVTILGA+GWYLKSKKKP
Sbjct: 61  ADSVPSSSASGSSSASASASASGASSEKISTDKQRNYAVVAGTVTILGALGWYLKSKKKP 120

BLAST of MS002827 vs. NCBI nr
Match: XP_038893784.1 (uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida] >XP_038893785.1 uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 107/119 (89.92%), Postives = 109/119 (91.60%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEK GGS 
Sbjct: 1   MAAARTAARIFSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKAGGSV 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
            DSIPSG      SASASGASTEKIS+DKHRNYAVVAGTVTILGA+GWYLKSKKKPEEV
Sbjct: 61  TDSIPSG------SASASGASTEKISSDKHRNYAVVAGTVTILGALGWYLKSKKKPEEV 113

BLAST of MS002827 vs. NCBI nr
Match: XP_022967119.1 (uncharacterized protein At2g27730, mitochondrial [Cucurbita maxima])

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 103/119 (86.55%), Postives = 108/119 (90.76%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFS SGKILSEEEKAAEN+YIKKTEQEKLEKLARKGPKPEEKP  S 
Sbjct: 1   MAAARTAARIFSRRFSGSGKILSEEEKAAENIYIKKTEQEKLEKLARKGPKPEEKPVESV 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           A+SIPSGSAS     SASGASTEKIS+DK+RNYAVVAGTVTI GA+GWYLKSKKKPEEV
Sbjct: 61  AESIPSGSAS-----SASGASTEKISSDKYRNYAVVAGTVTIFGALGWYLKSKKKPEEV 114

BLAST of MS002827 vs. NCBI nr
Match: XP_038895664.1 (uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFSSSGKILSEEEKAAENVYIKK EQEKLEKLARKGPKPEEK  GS 
Sbjct: 1   MAAARTAARIFSRRFSSSGKILSEEEKAAENVYIKKIEQEKLEKLARKGPKPEEKLEGSV 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           A S+PSGSASA      SGASTEKIS+DKHRNYAVVAGTVTILGA+GWYLKSKKKPEEV
Sbjct: 61  AGSVPSGSASA-----PSGASTEKISSDKHRNYAVVAGTVTILGALGWYLKSKKKPEEV 114

BLAST of MS002827 vs. ExPASy Swiss-Prot
Match: Q9ZUX4 (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-24
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 3   AARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSAAD 62
           A R A RIVSRRF SSGK+LSEEE+AAENV+IKK EQEKL+KLAR+G  P E+  GSA++
Sbjct: 2   ATRNALRIVSRRF-SSGKVLSEEERAAENVFIKKMEQEKLQKLARQG--PGEQAAGSASE 61

Query: 63  SIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKS--KKKPE 118
           +  +G     A+ASAS  S  K+S DK+RNYAVVAG V I+G++GWYLK+  KK+PE
Sbjct: 62  AKVAG-----ATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPE 110

BLAST of MS002827 vs. ExPASy TrEMBL
Match: A0A6J1CMV3 (uncharacterized protein At2g27730, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012716 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA
Sbjct: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           ADSIPSG    SASASASGAS EKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV
Sbjct: 61  ADSIPSG----SASASASGASAEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 115

BLAST of MS002827 vs. ExPASy TrEMBL
Match: A0A5A7T219 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002960 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.2e-44
Identity = 110/123 (89.43%), Postives = 114/123 (92.68%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEK G S 
Sbjct: 1   MAAARTAARIFSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKIGESV 60

Query: 61  ADSIP----SGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKP 120
           ADS+P    SGS+SASASASASGAS+EKISTDK RNYAVVAGTVTILGA+GWYLKSKKKP
Sbjct: 61  ADSVPSSSASGSSSASASASASGASSEKISTDKQRNYAVVAGTVTILGALGWYLKSKKKP 120

BLAST of MS002827 vs. ExPASy TrEMBL
Match: A0A1S3CEE3 (uncharacterized protein At2g27730, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499925 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.2e-44
Identity = 110/123 (89.43%), Postives = 114/123 (92.68%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEK G S 
Sbjct: 1   MAAARTAARIFSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKIGESV 60

Query: 61  ADSIP----SGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKP 120
           ADS+P    SGS+SASASASASGAS+EKISTDK RNYAVVAGTVTILGA+GWYLKSKKKP
Sbjct: 61  ADSVPSSSASGSSSASASASASGASSEKISTDKQRNYAVVAGTVTILGALGWYLKSKKKP 120

BLAST of MS002827 vs. ExPASy TrEMBL
Match: A0A6J1HVU8 (uncharacterized protein At2g27730, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466619 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 103/119 (86.55%), Postives = 108/119 (90.76%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFS SGKILSEEEKAAEN+YIKKTEQEKLEKLARKGPKPEEKP  S 
Sbjct: 1   MAAARTAARIFSRRFSGSGKILSEEEKAAENIYIKKTEQEKLEKLARKGPKPEEKPVESV 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           A+SIPSGSAS     SASGASTEKIS+DK+RNYAVVAGTVTI GA+GWYLKSKKKPEEV
Sbjct: 61  AESIPSGSAS-----SASGASTEKISSDKYRNYAVVAGTVTIFGALGWYLKSKKKPEEV 114

BLAST of MS002827 vs. ExPASy TrEMBL
Match: A0A6J1G0C8 (uncharacterized protein At2g27730, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449519 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 1   MAAARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSA 60
           MAAARTAARI SRRFS SGKILSEEEKAAEN+YIKKTEQEKLEKLARKGPKPEEKP  S 
Sbjct: 1   MAAARTAARIFSRRFSGSGKILSEEEKAAENIYIKKTEQEKLEKLARKGPKPEEKPVESV 60

Query: 61  ADSIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKSKKKPEEV 120
           A+SIPSGSAS     S SGASTEKIS+DK+RNYAVVAGTVTI GA+GWYLKSKKKPEEV
Sbjct: 61  AESIPSGSAS-----SGSGASTEKISSDKYRNYAVVAGTVTIFGALGWYLKSKKKPEEV 114

BLAST of MS002827 vs. TAIR 10
Match: AT2G27730.1 (copper ion binding )

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-25
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 3   AARTAARIVSRRFSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPGGSAAD 62
           A R A RIVSRRF SSGK+LSEEE+AAENV+IKK EQEKL+KLAR+G  P E+  GSA++
Sbjct: 2   ATRNALRIVSRRF-SSGKVLSEEERAAENVFIKKMEQEKLQKLARQG--PGEQAAGSASE 61

Query: 63  SIPSGSASASASASASGASTEKISTDKHRNYAVVAGTVTILGAVGWYLKS--KKKPE 118
           +  +G     A+ASAS  S  K+S DK+RNYAVVAG V I+G++GWYLK+  KK+PE
Sbjct: 62  AKVAG-----ATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPE 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142661.13.6e-4795.80uncharacterized protein At2g27730, mitochondrial [Momordica charantia] >XP_02214... [more]
XP_008461298.11.1e-4389.43PREDICTED: uncharacterized protein At2g27730, mitochondrial [Cucumis melo] >KAA0... [more]
XP_038893784.11.4e-4389.92uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida] >XP_03... [more]
XP_022967119.12.9e-4186.55uncharacterized protein At2g27730, mitochondrial [Cucurbita maxima][more]
XP_038895664.13.8e-4187.39uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9ZUX42.6e-2462.39Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
A0A6J1CMV31.7e-4795.80uncharacterized protein At2g27730, mitochondrial OS=Momordica charantia OX=3673 ... [more]
A0A5A7T2195.2e-4489.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEE35.2e-4489.43uncharacterized protein At2g27730, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1HVU81.4e-4186.55uncharacterized protein At2g27730, mitochondrial OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1G0C84.1e-4185.71uncharacterized protein At2g27730, mitochondrial OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
AT2G27730.11.8e-2562.39copper ion binding [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..83
NoneNo IPR availablePANTHERPTHR33878:SF1OS08G0559000 PROTEINcoord: 2..118
NoneNo IPR availablePANTHERPTHR33878OS08G0559000 PROTEINcoord: 2..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002827.1MS002827.1mRNA