Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACTTACGCCATTGTTCTCATAGCTTGCGGTTCTGTATTGGGCATTGTTTTGGTTTTGTGTTGCGTTTGTAGATTTGGGGGCCGCAAAAAGAAGGAGGTTTCAACAAGGCCACAGCCCCCAAAGGCGTATCGTGATGTAGAAATTGGAAGAAGCGAAACCAAAGATGGTGGGATGGCCATCTTGGCTGGAGTTGGTGCTGGTTTAGCCACTGCGGCTGTCGTCACTAGTTTAAGCAGTGGAGGAGGAGATGGCGGTGGTGGAGATGACGGTGGAGGAGATGGCGGTGATGGTGGTGGCTGTGGCGGCGGTTGTGGCGGCGGTTGCGGCGGTGGCTGTGGCGGT
mRNA sequence
ATGAAAACTTACGCCATTGTTCTCATAGCTTGCGGTTCTGTATTGGGCATTGTTTTGGTTTTGTGTTGCGTTTGTAGATTTGGGGGCCGCAAAAAGAAGGAGGTTTCAACAAGGCCACAGCCCCCAAAGGCGTATCGTGATGTAGAAATTGGAAGAAGCGAAACCAAAGATGGTGGGATGGCCATCTTGGCTGGAGTTGGTGCTGGTTTAGCCACTGCGGCTGTCGTCACTAGTTTAAGCAGTGGAGGAGGAGATGGCGGTGGTGGAGATGACGGTGGAGGAGATGGCGGTGATGGTGGTGGCTGTGGCGGCGGTTGTGGCGGCGGTTGCGGCGGTGGCTGTGGCGGT
Coding sequence (CDS)
ATGAAAACTTACGCCATTGTTCTCATAGCTTGCGGTTCTGTATTGGGCATTGTTTTGGTTTTGTGTTGCGTTTGTAGATTTGGGGGCCGCAAAAAGAAGGAGGTTTCAACAAGGCCACAGCCCCCAAAGGCGTATCGTGATGTAGAAATTGGAAGAAGCGAAACCAAAGATGGTGGGATGGCCATCTTGGCTGGAGTTGGTGCTGGTTTAGCCACTGCGGCTGTCGTCACTAGTTTAAGCAGTGGAGGAGGAGATGGCGGTGGTGGAGATGACGGTGGAGGAGATGGCGGTGATGGTGGTGGCTGTGGCGGCGGTTGTGGCGGCGGTTGCGGCGGTGGCTGTGGCGGT
Protein sequence
MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGDGGGGDDGGGDGGDGGGCGGGCGGGCGGGCGG
Homology
BLAST of MS002801 vs. NCBI nr
Match:
XP_022142786.1 (glycine-rich cell wall structural protein 1-like [Momordica charantia])
HSP 1 Score: 142.5 bits (358), Expect = 2.3e-30
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 26 RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD 85
RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD
Sbjct: 20 RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD 79
Query: 86 GGGGDDGGGDGGDG---GGCGGGCGGGCGGGCGG 117
GGGGDDGGGDGGDG GGCGGGCGGGCGGGCGG
Sbjct: 80 GGGGDDGGGDGGDGGGCGGCGGGCGGGCGGGCGG 113
BLAST of MS002801 vs. NCBI nr
Match:
XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI CG V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSSGGGDGGGGDDGGGDGG---DGGGCGGGCGGGC 117
E K+GGM ILAG AGLATAAVVTSLS+ GG GGGG++GGGDGG GGGCGGGCGGGC
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGC 120
BLAST of MS002801 vs. NCBI nr
Match:
KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 79/126 (62.70%), Postives = 93/126 (73.81%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI CG V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSS---GGGDGGGGDDGGGDGGDGGGCGGGCGGGC 117
E K+GGM ILAG AGLATAAVVTSL++ GGG GGGG++GGGDGG GGGCGGGCGGGC
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGG-GGGCGGGCGGGC 120
BLAST of MS002801 vs. NCBI nr
Match:
XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])
HSP 1 Score: 100.9 bits (250), Expect = 7.6e-18
Identity = 80/127 (62.99%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI CG V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSS-GGGDGGGGDDGGGD--GGD-GGGCGGGCGGG 117
E K+GGM ILAG AGLATAAVVTSL++ GGG GGGG++GGGD GGD GGGCGGGCGGG
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCGGG 120
BLAST of MS002801 vs. NCBI nr
Match:
XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])
HSP 1 Score: 97.8 bits (242), Expect = 6.4e-17
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI G V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSSGGGDGGGGDDGGGDGG---DGGGCGGGCGGGC 117
E K+GGM ILAG AGLATAAVVTSLS+ GG GGGG +GG DGG GGGCGGGCGGGC
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGC 120
BLAST of MS002801 vs. ExPASy TrEMBL
Match:
A0A6J1CN85 (glycine-rich cell wall structural protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012824 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 26 RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD 85
RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD
Sbjct: 20 RFGGRKKKEVSTRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTSLSSGGGD 79
Query: 86 GGGGDDGGGDGGDG---GGCGGGCGGGCGGGCGG 117
GGGGDDGGGDGGDG GGCGGGCGGGCGGGCGG
Sbjct: 80 GGGGDDGGGDGGDGGGCGGCGGGCGGGCGGGCGG 113
BLAST of MS002801 vs. ExPASy TrEMBL
Match:
A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 80/127 (62.99%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI CG V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSS-GGGDGGGGDDGGGD--GGD-GGGCGGGCGGG 117
E K+GGM ILAG AGLATAAVVTSL++ GGG GGGG++GGGD GGD GGGCGGGCGGG
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCGGG 120
BLAST of MS002801 vs. ExPASy TrEMBL
Match:
A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEV-------STRPQPPKAYRDVEIGRS 60
M+TYAIVLI G V+ ++L CVC +GGRKKK+ S P+ RD+E+G
Sbjct: 1 MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELG-- 60
Query: 61 ETKDGGMAILAGVGAGLATAAVVTSLSSGGGDGGGGDDGGGDGG---DGGGCGGGCGGGC 117
E K+GGM ILAG AGLATAAVVTSLS+ GG GGGG +GG DGG GGGCGGGCGGGC
Sbjct: 61 EAKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGC 120
BLAST of MS002801 vs. ExPASy TrEMBL
Match:
A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 76/123 (61.79%), Postives = 87/123 (70.73%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKKEVSTRPQP---PKAYRDVEIGR--SET 60
MKTYAIVLIA GSV+G V++L CVC+FG +KK+ T P P+ D+E G+
Sbjct: 1 MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60
Query: 61 KDGGMAILAGVGAGLATAAVVTSLSSGGGDGGG--GDDGGGDGGDGGGCGGGCGGGCGGG 117
+GGM IL G AGLATAAVVT+LSS GG GGG G G GDGG GGGCGGGC GGCGGG
Sbjct: 61 NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGC-GGCGGG 120
BLAST of MS002801 vs. ExPASy TrEMBL
Match:
A0A5J5AB60 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_008100 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 80/130 (61.54%), Postives = 85/130 (65.38%), Query Frame = 0
Query: 1 MKTYAIVLIACGSVLGIVLVLCCVCRFGGRKKK---------EVSTRPQPPKAYRDVEIG 60
MK YAI LI CGSV V+VLCC+C GGRKKK VS P P +AYRDVE G
Sbjct: 139 MKAYAIALIVCGSVAAAVIVLCCLCN-GGRKKKGTNHPAVRQSVSATP-PQQAYRDVERG 198
Query: 61 R----SETKDGGMAILAGVGAGLATAAVVTSLSSGGGDGGGGDDGGGDGGDGGGCGGGCG 117
S T+DG M ILAG A A AAV+ S SSGGG GG GGGDGG GGGCGGGCG
Sbjct: 199 EKPKSSGTRDGSMVILAGAAAATAAAAVIVSTSSGGGCGGDSGGGGGDGG-GGGCGGGCG 258
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022142786.1 | 2.3e-30 | 96.81 | glycine-rich cell wall structural protein 1-like [Momordica charantia] | [more] |
| XP_023552868.1 | 3.1e-19 | 62.70 | glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6577050.1 | 1.5e-18 | 62.70 | hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022931328.1 | 7.6e-18 | 62.99 | glycine-rich protein 5-like [Cucurbita moschata] | [more] |
| XP_022985127.1 | 6.4e-17 | 61.11 | glycine-rich protein 5-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CN85 | 1.1e-30 | 96.81 | glycine-rich cell wall structural protein 1-like OS=Momordica charantia OX=3673 ... | [more] |
| A0A6J1EY84 | 3.7e-18 | 62.99 | glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S... | [more] |
| A0A6J1J409 | 3.1e-17 | 61.11 | glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=... | [more] |
| A0A0A0KVE1 | 1.3e-15 | 61.79 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1 | [more] |
| A0A5J5AB60 | 1.4e-14 | 61.54 | Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_008100 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
