Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCTTATACCACCATTCTCATAATCTGCAGTTCTGTGATAGCTGCAGTTGTGATTTTATGTTGTCTTTGCATAATTTTCGGTCGTAAGAAGAAGGAAACAGGACGACTAACTCCAGCTTCGAGTTCAACTATTGGTTCGAGGCTGCCATGGCCGCGACAAACATATCATGTTCATGATATTGAACCTGGACAAGGGGCTCGAACAAACAGACAACACACACAAAGAAGTGGACAAGACACTCGAACAAACAGACAGGGTGCTCGAGGAAGCGGGATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGTGATTGCCGGTTTGAGTAGCGAAGGAAGAGAGGGTGTCTATGGTGATGACTGTGGAGATGGTGGCAGCAGCGATGGTTATGGTTATGATGGTAGTTGTGGAGATGGTGACGGTGGCGGTGATTGTGGAGATGGTGGCGAAGGCGGAGGTGGCGGCTGTGGAGATGGTGGCGGGGGCGGAGGCTGTGGTGGTGGTTGTGGAGGATGTGGTGGT
mRNA sequence
ATGAAACCTTATACCACCATTCTCATAATCTGCAGTTCTGTGATAGCTGCAGTTGTGATTTTATGTTGTCTTTGCATAATTTTCGGTCGTAAGAAGAAGGAAACAGGACGACTAACTCCAGCTTCGAGTTCAACTATTGGTTCGAGGCTGCCATGGCCGCGACAAACATATCATGTTCATGATATTGAACCTGGACAAGGGGCTCGAACAAACAGACAACACACACAAAGAAGTGGACAAGACACTCGAACAAACAGACAGGGTGCTCGAGGAAGCGGGATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGTGATTGCCGGTTTGAGTAGCGAAGGAAGAGAGGGTGTCTATGGTGATGACTGTGGAGATGGTGGCAGCAGCGATGGTTATGGTTATGATGGTAGTTGTGGAGATGGTGACGGTGGCGGTGATTGTGGAGATGGTGGCGAAGGCGGAGGTGGCGGCTGTGGAGATGGTGGCGGGGGCGGAGGCTGTGGTGGTGGTTGTGGAGGATGTGGTGGT
Coding sequence (CDS)
ATGAAACCTTATACCACCATTCTCATAATCTGCAGTTCTGTGATAGCTGCAGTTGTGATTTTATGTTGTCTTTGCATAATTTTCGGTCGTAAGAAGAAGGAAACAGGACGACTAACTCCAGCTTCGAGTTCAACTATTGGTTCGAGGCTGCCATGGCCGCGACAAACATATCATGTTCATGATATTGAACCTGGACAAGGGGCTCGAACAAACAGACAACACACACAAAGAAGTGGACAAGACACTCGAACAAACAGACAGGGTGCTCGAGGAAGCGGGATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGTGATTGCCGGTTTGAGTAGCGAAGGAAGAGAGGGTGTCTATGGTGATGACTGTGGAGATGGTGGCAGCAGCGATGGTTATGGTTATGATGGTAGTTGTGGAGATGGTGACGGTGGCGGTGATTGTGGAGATGGTGGCGAAGGCGGAGGTGGCGGCTGTGGAGATGGTGGCGGGGGCGGAGGCTGTGGTGGTGGTTGTGGAGGATGTGGTGGT
Protein sequence
MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVHDIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGCGGCGG
Homology
BLAST of MS002800 vs. NCBI nr
Match:
XP_022142785.1 (ctenidin-3-like [Momordica charantia])
HSP 1 Score: 278.1 bits (710), Expect = 5.5e-71
Identity = 168/184 (91.30%), Postives = 169/184 (91.85%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH
Sbjct: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
Query: 61 DIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLSS 120
DIEPGQGA RTNRQGARGSGIKDGGMAILAGAG AIATAAVIAGLSS
Sbjct: 61 DIEPGQGA--------------RTNRQGARGSGIKDGGMAILAGAGTAIATAAVIAGLSS 120
Query: 121 EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGCG 180
EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGG+GGGGGCGDGGGGGGCGGGCG
Sbjct: 121 EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGKGGGGGCGDGGGGGGCGGGCG 170
Query: 181 GCGG 185
GCGG
Sbjct: 181 GCGG 170
BLAST of MS002800 vs. NCBI nr
Match:
KAG6600486.1 (hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 89.7 bits (221), Expect = 2.8e-14
Identity = 101/214 (47.20%), Postives = 119/214 (55.61%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRL----PWPRQT 60
+KP ILIIC+S++AAVVILCCLCII GRK+K++ R TP S +I SR PWPRQ+
Sbjct: 4 IKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTP--SGSISSRRPPPPPWPRQS 63
Query: 61 YHVHDIEPGQGARTNRQHTQRSGQDTRTNRQGA--------------------------R 120
Y +D+E GQG R RQ T RS Q ++R GA +
Sbjct: 64 Y--YDVESGQGIRAFRQDTLRSEQSVPSDRHGAQRSEQYSFRTDRSRSSQSSEPSVGRDK 123
Query: 121 GSGIKDGGMAILAGAGAAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSCGDGD 180
SG KDGGMAI AGAGAA+A AA GLSS G + GG+ DGY D S DG
Sbjct: 124 RSGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEY-------GGNGDGYWGDSSLTDG- 183
Query: 181 GGGDCGDGGEGGGGGCGDGGGGGGCGGGCGGCGG 185
G CG+G GG GGGG CG GCG GG
Sbjct: 184 YGDSCGNGNRDGG-----SGGGGVCGAGCGSVGG 200
BLAST of MS002800 vs. NCBI nr
Match:
XP_022942031.1 (glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata])
HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 105/218 (48.17%), Postives = 124/218 (56.88%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRL-----PWPRQ 60
+KP ILIIC+S++AAVVILCCLCII GRK+K++ R TP S +I SR PWPRQ
Sbjct: 4 IKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTP--SGSISSRRPPPPPPWPRQ 63
Query: 61 TYHVHDIEPGQGARTNRQHTQRSGQDTRTNRQGA-------------------------- 120
+Y +D+E GQG R RQ T RS Q ++R GA
Sbjct: 64 SY--YDVESGQGIRAYRQDTLRSEQSVPSDRHGAQRSEQYSFRTDRSRSNQSSEPSVGRD 123
Query: 121 RGSGIKDGGMAILAGAGAAIATAAVIAGLSSEGRE--GVYGDD-CGDGGSSDGYGYDGSC 180
+ SG KDGGMAI AGAGAA+A AA GLSS G + G GD GD +DGYG SC
Sbjct: 124 KRSGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTDGYG--DSC 183
Query: 181 GDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGCGGCGG 185
G+G+ DGG GGGG CG G G G G CG GG
Sbjct: 184 GNGN-----RDGGSGGGGVCGAGCGSVG-GSACGSTGG 209
BLAST of MS002800 vs. NCBI nr
Match:
XP_023543717.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 84.7 bits (208), Expect = 8.9e-13
Identity = 104/217 (47.93%), Postives = 122/217 (56.22%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRL----PWPRQT 60
+KP ILIIC+S++AAVVILCCLCII GR++K++ R TP S +I SR PWPRQ+
Sbjct: 4 IKPSIIILIICASLLAAVVILCCLCIIRGRRRKDSTRPTP--SGSISSRRPPPPPWPRQS 63
Query: 61 YHVHDIEPGQGARTNRQHTQRSGQDTRTNRQGA--------------------------R 120
Y +D+E GQG R RQ T RS Q ++R GA +
Sbjct: 64 Y--YDVESGQGIRAYRQDTLRSEQSVPSDRHGAQRSERYSFRTDRSRSSQSSEPSVGRDK 123
Query: 121 GSGIKDGGMAILAGAGAAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSCGDGD 180
SG KDGGMAILAGAGAA+A AA GLSS G + GG+ DGY DGS DG
Sbjct: 124 QSGFKDGGMAILAGAGAAMAAAAAAIGLSSGGGQEY-------GGNGDGYWGDGSRTDGY 183
Query: 181 G---GGDCGDGGEGGGGGCGDGGGGGGCGGGCGGCGG 185
G G DGG GGGG CG G G G G CG GG
Sbjct: 184 GDSWGNGNRDGGSGGGGVCGAGCGSVG-GSACGSTGG 208
BLAST of MS002800 vs. NCBI nr
Match:
PON60285.1 (hypothetical protein TorRG33x02_285070 [Trema orientale])
HSP 1 Score: 63.5 bits (153), Expect = 2.1e-06
Identity = 76/185 (41.08%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHV- 60
MK Y L+ C SVIAAV+IL CLC +KK +T P ++ P ++ Y
Sbjct: 1 MKAYAIALVACGSVIAAVIILVCLCSRGNKKKMQTRTPNPIRMQSLSGTTPSAQRPYPAG 60
Query: 61 HDIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLS 120
DIE G+G + + SG KDGGM ILAGAGAA+AT A +A +S
Sbjct: 61 PDIERGEGTK--------------------KSSGTKDGGMVILAGAGAALATTAAVASIS 120
Query: 121 SEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGC 180
S CG GG D GD G GG+ GGGGC GG GGC GGC
Sbjct: 121 S---------GCGGGGGGD--------------GDAGSGGD-GGGGC---GGCGGC-GGC 137
Query: 181 GGCGG 185
GGCGG
Sbjct: 181 GGCGG 137
BLAST of MS002800 vs. ExPASy TrEMBL
Match:
A0A6J1CLX2 (ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1)
HSP 1 Score: 278.1 bits (710), Expect = 2.7e-71
Identity = 168/184 (91.30%), Postives = 169/184 (91.85%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH
Sbjct: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
Query: 61 DIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLSS 120
DIEPGQGA RTNRQGARGSGIKDGGMAILAGAG AIATAAVIAGLSS
Sbjct: 61 DIEPGQGA--------------RTNRQGARGSGIKDGGMAILAGAGTAIATAAVIAGLSS 120
Query: 121 EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGCG 180
EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGG+GGGGGCGDGGGGGGCGGGCG
Sbjct: 121 EGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGKGGGGGCGDGGGGGGCGGGCG 170
Query: 181 GCGG 185
GCGG
Sbjct: 181 GCGG 170
BLAST of MS002800 vs. ExPASy TrEMBL
Match:
A0A6J1FMR9 (glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111447219 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 8.7e-14
Identity = 105/218 (48.17%), Postives = 124/218 (56.88%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRL-----PWPRQ 60
+KP ILIIC+S++AAVVILCCLCII GRK+K++ R TP S +I SR PWPRQ
Sbjct: 4 IKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTP--SGSISSRRPPPPPPWPRQ 63
Query: 61 TYHVHDIEPGQGARTNRQHTQRSGQDTRTNRQGA-------------------------- 120
+Y +D+E GQG R RQ T RS Q ++R GA
Sbjct: 64 SY--YDVESGQGIRAYRQDTLRSEQSVPSDRHGAQRSEQYSFRTDRSRSNQSSEPSVGRD 123
Query: 121 RGSGIKDGGMAILAGAGAAIATAAVIAGLSSEGRE--GVYGDD-CGDGGSSDGYGYDGSC 180
+ SG KDGGMAI AGAGAA+A AA GLSS G + G GD GD +DGYG SC
Sbjct: 124 KRSGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTDGYG--DSC 183
Query: 181 GDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGCGGCGG 185
G+G+ DGG GGGG CG G G G G CG GG
Sbjct: 184 GNGN-----RDGGSGGGGVCGAGCGSVG-GSACGSTGG 209
BLAST of MS002800 vs. ExPASy TrEMBL
Match:
A0A2P5CH37 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_285070 PE=4 SV=1)
HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 76/185 (41.08%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHV- 60
MK Y L+ C SVIAAV+IL CLC +KK +T P ++ P ++ Y
Sbjct: 1 MKAYAIALVACGSVIAAVIILVCLCSRGNKKKMQTRTPNPIRMQSLSGTTPSAQRPYPAG 60
Query: 61 HDIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLS 120
DIE G+G + + SG KDGGM ILAGAGAA+AT A +A +S
Sbjct: 61 PDIERGEGTK--------------------KSSGTKDGGMVILAGAGAALATTAAVASIS 120
Query: 121 SEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGGGGCGGGC 180
S CG GG D GD G GG+ GGGGC GG GGC GGC
Sbjct: 121 S---------GCGGGGGGD--------------GDAGSGGD-GGGGC---GGCGGC-GGC 137
Query: 181 GGCGG 185
GGCGG
Sbjct: 181 GGCGG 137
BLAST of MS002800 vs. ExPASy TrEMBL
Match:
A0A2P5BBV5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 6.7e-06
Identity = 77/188 (40.96%), Postives = 90/188 (47.87%), Query Frame = 0
Query: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHV- 60
MK Y L+ C SVIAAV+IL CLC KKK+T P ++ P ++ Y
Sbjct: 1 MKAYAIALVACGSVIAAVIILVCLCSRGNNKKKQTRTPNPIRMQSLSGTTPSAQRPYPAG 60
Query: 61 HDIEPGQGARTNRQHTQRSGQDTRTNRQGARGSGIKDGGMAILAGAGAAIATAAVIAGLS 120
DIE G+G + SG KDGGM ILAGAGA + T A +A +S
Sbjct: 61 PDIERGEGT--------------------MKSSGTKDGGMVILAGAGATLVTTAAVASIS 120
Query: 121 SEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGGGDCGDGGEGGGGGCGDGGGG-GGCG-- 180
S CG G GGG G GG+G GG GDGGGG GGCG
Sbjct: 121 S------------------------GCGGGGGGGGGGGGGDGDAGGSGDGGGGCGGCGGC 144
Query: 181 GGCGGCGG 185
GGCGGCGG
Sbjct: 181 GGCGGCGG 144
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022142785.1 | 5.5e-71 | 91.30 | ctenidin-3-like [Momordica charantia] | [more] |
| KAG6600486.1 | 2.8e-14 | 47.20 | hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022942031.1 | 1.8e-13 | 48.17 | glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata] | [more] |
| XP_023543717.1 | 8.9e-13 | 47.93 | glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] | [more] |
| PON60285.1 | 2.1e-06 | 41.08 | hypothetical protein TorRG33x02_285070 [Trema orientale] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CLX2 | 2.7e-71 | 91.30 | ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1 | [more] |
| A0A6J1FMR9 | 8.7e-14 | 48.17 | glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
| A0A2P5CH37 | 1.0e-06 | 41.08 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_285070 PE=4 SV... | [more] |
| A0A2P5BBV5 | 6.7e-06 | 40.96 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
