MS002752 (gene) Bitter gourd (TR) v1

Overview


Name	MS002752
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription elongation factor 1 homolog
Location	scaffold66: 278758 .. 279173 (-)
RNA-Seq Expression	MS002752
Synteny	MS002752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATGTAAGTTTGCATTTGGTTTCTCTCGGTTTCTAGTAACACGTGGGGGAGGGATTTGATTGAAGGATTTTAGTAGTTCGAGGCACAATGCATGGTTTTACTTCAAAATGTCATACAAAAAGCAGTAACAGTGAATATGTTTAATGTCATTAACTTGTCTCCTGGATTAGTCTCTCTGTCTAGGTGCCTCATTGTTTTGCATTGTGACGAGGGTGTTTGTATGGTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATT

mRNA sequence

ATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATT

Coding sequence (CDS)

ATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATT

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

Homology

[Close]

BLAST of MS002752 vs. NCBI nr
Match: KAA0058841.1 (Transcription elongation factor 1 isoform 2 [Cucumis melo var. makuwa] >TYK11258.1 Transcription elongation factor 1 isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 22 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 81

Query: 61 TGI 64
          TGI
Sbjct: 82 TGI 84

[Close]

BLAST of MS002752 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. NCBI nr
Match: KAD4982421.1 (hypothetical protein E3N88_19092 [Mikania micrantha])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 34 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQENFSTTV 93

Query: 61 TG 63
          TG
Sbjct: 94 TG 95

[Close]

BLAST of MS002752 vs. NCBI nr
Match: XP_024017449.1 (transcription elongation factor 1 homolog isoform X2 [Morus notabilis])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-28
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TGI 64
            +
Sbjct: 61 NAL 63

[Close]

BLAST of MS002752 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-25
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.2e-13
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TGI 64
            +
Sbjct: 61 NSL 63

[Close]

BLAST of MS002752 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 IT 62
          IT
Sbjct: 61 IT 62

[Close]

BLAST of MS002752 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 IT 62
          IT
Sbjct: 61 IT 62

[Close]

BLAST of MS002752 vs. ExPASy TrEMBL
Match: A0A5A7UZC1 (Transcription elongation factor 1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001140 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 22 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 81

Query: 61 TGI 64
          TGI
Sbjct: 82 TGI 84

[Close]

BLAST of MS002752 vs. ExPASy TrEMBL
Match: A0A6J1CNR1 (Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC111012788 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. ExPASy TrEMBL
Match: A0A5N6NM69 (Transcription elongation factor 1 homolog OS=Mikania micrantha OX=192012 GN=E3N88_19092 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 34 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQENFSTTV 93

Query: 61 TG 63
          TG
Sbjct: 94 TG 95

[Close]

BLAST of MS002752 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

[Close]

BLAST of MS002752 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-26
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TGI 64
          T +
Sbjct: 61 TAL 63

The following BLAST results are available for this feature:

BLAST of MS002752 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058841.1	3.4e-28	98.41	Transcription elongation factor 1 isoform 2 [Cucumis melo var. makuwa] >TYK11258...	[more]
XP_022142747.1	5.7e-28	96.83	transcription elongation factor 1 homolog [Momordica charantia]	[more]
KAD4982421.1	1.3e-27	96.77	hypothetical protein E3N88_19092 [Mikania micrantha]	[more]
XP_024017449.1	2.8e-27	95.24	transcription elongation factor 1 homolog isoform X2 [Morus notabilis]	[more]
XP_004146241.1	2.8e-27	95.24	transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED...	[more]

BLAST of MS002752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	2.7e-28	88.89	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	2.8e-25	80.95	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	9.2e-13	50.79	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	1.3e-11	51.61	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	1.3e-11	51.61	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of MS002752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZC1	1.6e-28	98.41	Transcription elongation factor 1 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1CNR1	2.8e-28	96.83	Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5N6NM69	6.2e-28	96.77	Transcription elongation factor 1 homolog OS=Mikania micrantha OX=192012 GN=E3N8...	[more]
A0A0A0LAG5	1.4e-27	95.24	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
W9R774	1.4e-27	95.24	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]

BLAST of MS002752 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	2.0e-26	80.95	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..61 e-value: 3.1E-20 score: 72.0
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..63
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 16..63 e-value: 2.3E-16 score: 61.7
None	No IPR available	PANTHER	PTHR20934:SF13	TRANSCRIPTION ELONGATION FACTOR 1 HOMOLOG	coord: 1..63
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002752.1	MS002752.1	mRNA