MS002741 (gene) Bitter gourd (TR) v1

Overview


Name	MS002741
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L33-like
Location	scaffold66: 180177 .. 181249 (-)
RNA-Seq Expression	MS002741
Synteny	MS002741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATGGCGACAATTATTCAAAGGTTTCGTTCGGAGTTGGCGCTTTCTTGTGGGTTAAGGAACCGATTTCTCAATAATCCCGCGTCTTCCGCTCCTCCAAGCTTCCTCACTTTCATGTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCCTCGTCTCCAATCTCAAAGGTAATTCCCAACATTTCCATCCAAATTCAAATCATCCAATTGAGTATTGTGATCGGGATATTTGTTTGGTGGGGTTTATTTACGGTTTTTCTTACCAACCAATTATAGGACGGAGAAATTTAAGATTTGGGGGTCTGTTGAAATTTTCAGGATCGTTGTCACTAAGCGCTCGGGAGAGATCAATCCGTCGTGGTTCCGTAATTTGTATGGCCAAAAGATATGCTCCCAACACTACAAAGAGAAAGGTACGCAACTATGCATTATATCTGTTGGTGTATGTGTTATGTCGACACTTCTTATGTCAATTTGTATGATGTCCCTCACAATTGCAGCATTCTGTATGATATATGCTTGATATGATATAGATAACTTGTATTTATCTGATTTAATTTGTATCTTTGATATGAGATGACTGGCTGACAGCGAAACCTGATAAAACTTCTGTTGGGATTATTTTGCTGTGAAGTTTGGTACATTTTCTGTTCCAACTTTATAGTTTGTACGTTATGCAAAAGTGAACCAACTAAATCATTGGGAACAGTATTTTGCAATTTGTTTGTTATGTTAAATGTTACTGTTGATTCATGATTTTCAATCAGGTGTCAACCGTAAGGTATAGATTTCTGTGGAGTTTTGTATGTAGGGGAAGGAATGATCATGTGGCTAACTTATCAATTGCATTCAAATGCAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGGCAAGAAAAAGAAGACGAGGAGAAAAGGGAGAAAGAGAGATTTCAAAATAGTCCGACTCTCCTCGGCTGCGGGGACTGGCTTTTTCTATGTGAAGCAGAAGAGCAAGAACATGGCTGACAAGATTCAGCTCCAGAAATATGACCCTCTTGAAAAACGTCATGTTCTGTTCACTGAAGTCAAG

mRNA sequence

AAGATGGCGACAATTATTCAAAGGTTTCGTTCGGAGTTGGCGCTTTCTTGTGGGTTAAGGAACCGATTTCTCAATAATCCCGCGTCTTCCGCTCCTCCAAGCTTCCTCACTTTCATGTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCCTCGTCTCCAATCTCAAAGGATCGTTGTCACTAAGCGCTCGGGAGAGATCAATCCGTCGTGGTTCCGTAATTTGTATGGCCAAAAGATATGCTCCCAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGGCAAGAAAAAGAAGACGAGGAGAAAAGGGAGAAAGAGAGATTTCAAAATAGTCCGACTCTCCTCGGCTGCGGGGACTGGCTTTTTCTATGTGAAGCAGAAGAGCAAGAACATGGCTGACAAGATTCAGCTCCAGAAATATGACCCTCTTGAAAAACGTCATGTTCTGTTCACTGAAGTCAAG

Coding sequence (CDS)

AAGATGGCGACAATTATTCAAAGGTTTCGTTCGGAGTTGGCGCTTTCTTGTGGGTTAAGGAACCGATTTCTCAATAATCCCGCGTCTTCCGCTCCTCCAAGCTTCCTCACTTTCATGTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCCTCGTCTCCAATCTCAAAGGATCGTTGTCACTAAGCGCTCGGGAGAGATCAATCCGTCGTGGTTCCGTAATTTGTATGGCCAAAAGATATGCTCCCAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGGCAAGAAAAAGAAGACGAGGAGAAAAGGGAGAAAGAGAGATTTCAAAATAGTCCGACTCTCCTCGGCTGCGGGGACTGGCTTTTTCTATGTGAAGCAGAAGAGCAAGAACATGGCTGACAAGATTCAGCTCCAGAAATATGACCCTCTTGAAAAACGTCATGTTCTGTTCACTGAAGTCAAG

Protein sequence

KMATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

Homology

[Close]

BLAST of MS002741 vs. NCBI nr
Match: XP_022142796.1 (uncharacterized protein LOC111012832 [Momordica charantia])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 158/172 (91.86%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK----- 61
           MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK     
Sbjct: 1   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGRRNL 60

Query: 62  ---------GSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK 121
                    GSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK
Sbjct: 61  RFGGLLKFSGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK 120

Query: 122 GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
Sbjct: 121 GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 172

[Close]

BLAST of MS002741 vs. NCBI nr
Match: KAG7015026.1 (rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 4.0e-54
Identity = 122/158 (77.22%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL N ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMAKRYAPNTTKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of MS002741 vs. NCBI nr
Match: KAG6577004.1 (hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 121/158 (76.58%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL N ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSI  GSVICMAKRYAPNTTKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIPYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of MS002741 vs. NCBI nr
Match: XP_023552499.1 (uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-53
Identity = 120/158 (75.95%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSV CMAKRYAPNTTKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVTCMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of MS002741 vs. NCBI nr
Match: XP_022922690.1 (uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_022922691.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 9.9e-53
Identity = 119/158 (75.32%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of MS002741 vs. ExPASy Swiss-Prot
Match: Q5FFJ4 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-07
Identity = 24/46 (52.17%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 115 IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK 160
           +V+L+S+AGTG+FYVK+++ K + +K+  +KYDP+ ++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of MS002741 vs. ExPASy Swiss-Prot
Match: Q5HBV6 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-07
Identity = 24/46 (52.17%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 115 IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK 160
           +V+L+S+AGTG+FYVK+++ K + +K+  +KYDP+ ++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of MS002741 vs. ExPASy Swiss-Prot
Match: B4S2C4 (50S ribosomal protein L33 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmG PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-06
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 116 VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK 160
           ++L S+AGTGFFY   K+K NM  K++++KYDP+ ++HV+F E K
Sbjct: 5   IKLVSSAGTGFFYTTDKNKRNMPGKMEIKKYDPVVRKHVMFKEAK 49

[Close]

BLAST of MS002741 vs. ExPASy Swiss-Prot
Match: Q3IFE7 (50S ribosomal protein L33 OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=rpmG PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.6e-06
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 116 VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK 160
           +RL S AGTGFFY   K+K NM +K++++K+DP  ++HVLF E K
Sbjct: 5   IRLVSTAGTGFFYTTDKNKRNMPEKMEIKKFDPKIRKHVLFKEAK 49

[Close]

BLAST of MS002741 vs. ExPASy Swiss-Prot
Match: Q3YSN4 (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=3 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-06
Identity = 24/52 (46.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 109 RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK 160
           +K    +V+L+S+A TGFFYVK+++ K + +K+  +KYDP+ ++HVLF+E K
Sbjct: 3   KKGSTLLVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of MS002741 vs. ExPASy TrEMBL
Match: A0A6J1CN96 (uncharacterized protein LOC111012832 OS=Momordica charantia OX=3673 GN=LOC111012832 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 158/172 (91.86%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK----- 61
           MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK     
Sbjct: 1   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGRRNL 60

Query: 62  ---------GSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK 121
                    GSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK
Sbjct: 61  RFGGLLKFSGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRK 120

Query: 122 GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
Sbjct: 121 GRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 172

[Close]

BLAST of MS002741 vs. ExPASy TrEMBL
Match: A0A6J1E4T6 (uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 119/158 (75.32%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of MS002741 vs. ExPASy TrEMBL
Match: A0A6J1E445 (uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 118/157 (75.16%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS 
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KKKKTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEV 159
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEV
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of MS002741 vs. ExPASy TrEMBL
Match: A0A6J1J566 (uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.5e-51
Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R     AL CG RNRFL + ASS PPSF++F  LSFSA+LSL +V N+K SLS 
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMA+RYAPNTTKRKRLSRKRGGDP KK+KTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of MS002741 vs. ExPASy TrEMBL
Match: A0A6J1J250 (uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.5e-51
Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 2   MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSL 61
           MA  I+R     AL CG RNRFL + ASS PPSF++F  LSFSA+LSL +V N+K SLS 
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 62  SARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSA 121
           SARERSIR GSVICMA+RYAPNTTKRKRLSRKRGGDP KK+KTRRKG ++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 122 AGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK 160
           AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of MS002741 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 109 RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK 160
           RK+ F  +RL SAAGTGFFYVK+KS K + +K++ +KYDP   RHVLFTE K
Sbjct: 5   RKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of MS002741 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 109 RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK 160
           RK+ F  +RL SAAGTGFFYVK+KS K + +K++ +KYDP   RHVLFTE K
Sbjct: 5   RKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

The following BLAST results are available for this feature:

BLAST of MS002741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142796.1	4.3e-72	91.86	uncharacterized protein LOC111012832 [Momordica charantia]	[more]
KAG7015026.1	4.0e-54	77.22	rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577004.1	2.6e-53	76.58	hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552499.1	3.4e-53	75.95	uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]	[more]
XP_022922690.1	9.9e-53	75.32	uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_0229226...	[more]

BLAST of MS002741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5FFJ4	3.8e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
Q5HBV6	3.8e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
B4S2C4	4.3e-06	51.11	50S ribosomal protein L33 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q3IFE7	5.6e-06	53.33	50S ribosomal protein L33 OS=Pseudoalteromonas translucida (strain TAC 125) OX=3...	[more]
Q3YSN4	9.5e-06	46.15	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=...	[more]

BLAST of MS002741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN96	2.1e-72	91.86	uncharacterized protein LOC111012832 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1E4T6	4.8e-53	75.32	uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E445	1.4e-52	75.16	uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J566	4.5e-51	73.42	uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J250	4.5e-51	73.42	uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS002741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06320.1	7.7e-11	61.54	Ribosomal protein L33 family protein	[more]
AT5G18790.1	7.7e-11	61.54	Ribosomal protein L33 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 115..159 e-value: 7.7E-8 score: 32.7
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 110..159 e-value: 7.2E-13 score: 46.7
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 100..158 e-value: 2.1E-16 score: 61.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
None	No IPR available	PANTHER	PTHR15238:SF1	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 109..159
None	No IPR available	PANTHER	PTHR15238	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 109..159
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 128..146
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 113..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002741.1	MS002741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome