MS002736 (gene) Bitter gourd (TR) v1

Overview
NameMS002736
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRegulator of rDNA transcription protein 15
Locationscaffold66: 102494 .. 102586 (+)
RNA-Seq ExpressionMS002736
SyntenyMS002736
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGATGTTTTAGGCATGGATAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTATTACGATATCTCCTTCCTCTAAATGATAATGTTCAG

mRNA sequence

TTTGATGTTTTAGGCATGGATAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTATTACGATATCTCCTTCCTCTAAATGATAATGTTCAG

Coding sequence (CDS)

TTTGATGTTTTAGGCATGGATAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTATTACGATATCTCCTTCCTCTAAATGATAATGTTCAG

Protein sequence

FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ
Homology
[Close]
BLAST of MS002736 vs. NCBI nr
Match: PHT44506.1 (hypothetical protein CQW23_13664 [Capsicum baccatum])

HSP 1 Score: 55.8 bits (133), Expect = 7.5e-05
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           F   G DNDPSAGSPTETLLR LLPLNDNVQ
Sbjct: 92  FCCAGFDNDPSAGSPTETLLRLLLPLNDNVQ 122

[Close]
BLAST of MS002736 vs. NCBI nr
Match: PHT44511.1 (Regulator of rDNA transcription protein 15 [Capsicum baccatum])

HSP 1 Score: 55.8 bits (133), Expect = 7.5e-05
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           F   G DNDPSAGSPTETLLR LLPLNDNVQ
Sbjct: 86  FCCAGFDNDPSAGSPTETLLRLLLPLNDNVQ 116

[Close]
BLAST of MS002736 vs. NCBI nr
Match: EXC10889.1 (hypothetical protein L484_002553 [Morus notabilis])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 3  VLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
          V+G DNDPSAGSPTETLLR LLPLND VQ
Sbjct: 28 VIGFDNDPSAGSPTETLLRLLLPLNDKVQ 56

[Close]
BLAST of MS002736 vs. NCBI nr
Match: PHT25323.1 (hypothetical protein CQW23_35043 [Capsicum baccatum])

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 4   LGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           LG DNDPSAGSPTETLLR LLPLND VQ
Sbjct: 198 LGFDNDPSAGSPTETLLRLLLPLNDKVQ 225

[Close]
BLAST of MS002736 vs. NCBI nr
Match: PHT25435.1 (hypothetical protein CQW23_34937 [Capsicum baccatum])

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           F  +G DNDPSAGSPTETLLR LLPLND VQ
Sbjct: 307 FCCVGFDNDPSAGSPTETLLRLLLPLNDKVQ 337

[Close]
BLAST of MS002736 vs. ExPASy Swiss-Prot
Match: P0C5Q0 (Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLR154W-F PE=5 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-04
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 0 

Query: 3  VLGMDNDPSAGSPTETLLRYLLPLNDNV 31
          +L   NDPSAGSPTETLLR L+PLND V
Sbjct: 13 LLNFFNDPSAGSPTETLLRLLVPLNDQV 40

[Close]
BLAST of MS002736 vs. ExPASy TrEMBL
Match: A0A0A0L1K6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G243390 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           FD+LG+DNDP AGSPTETLLR LLPLND VQ
Sbjct: 236 FDILGIDNDPFAGSPTETLLRLLLPLNDKVQ 266

[Close]
BLAST of MS002736 vs. ExPASy TrEMBL
Match: A0A2G2WGZ9 (Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW23_13669 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.6e-05
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           F   G DNDPSAGSPTETLLR LLPLNDNVQ
Sbjct: 86  FCCAGFDNDPSAGSPTETLLRLLLPLNDNVQ 116

[Close]
BLAST of MS002736 vs. ExPASy TrEMBL
Match: A0A2G2WGY2 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_13664 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.6e-05
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   FDVLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           F   G DNDPSAGSPTETLLR LLPLNDNVQ
Sbjct: 92  FCCAGFDNDPSAGSPTETLLRLLLPLNDNVQ 122

[Close]
BLAST of MS002736 vs. ExPASy TrEMBL
Match: W9S2L4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002553 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 3  VLGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
          V+G DNDPSAGSPTETLLR LLPLND VQ
Sbjct: 28 VIGFDNDPSAGSPTETLLRLLLPLNDKVQ 56

[Close]
BLAST of MS002736 vs. ExPASy TrEMBL
Match: A0A2G2UX93 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35043 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 4   LGMDNDPSAGSPTETLLRYLLPLNDNVQ 32
           LG DNDPSAGSPTETLLR LLPLND VQ
Sbjct: 198 LGFDNDPSAGSPTETLLRLLLPLNDKVQ 225

The following BLAST results are available for this feature:
BLAST of MS002736 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT44506.17.5e-0583.87hypothetical protein CQW23_13664 [Capsicum baccatum][more]
PHT44511.17.5e-0583.87Regulator of rDNA transcription protein 15 [Capsicum baccatum][more]
EXC10889.11.3e-0486.21hypothetical protein L484_002553 [Morus notabilis][more]
PHT25323.12.2e-0489.29hypothetical protein CQW23_35043 [Capsicum baccatum][more]
PHT25435.12.2e-0480.65hypothetical protein CQW23_34937 [Capsicum baccatum][more]
BLAST of MS002736 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C5Q01.0e-0475.00Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain A... [more]
BLAST of MS002736 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K65.6e-0683.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G243390 PE=4 SV=1[more]
A0A2G2WGZ93.6e-0583.87Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW2... [more]
A0A2G2WGY23.6e-0583.87Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_13664 PE=4 SV=1[more]
W9S2L46.2e-0586.21Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002553 PE=4 SV=1[more]
A0A2G2UX931.1e-0489.29Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35043 PE=4 SV=1[more]
BLAST of MS002736 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002736.1MS002736.1mRNA