MS002729 (gene) Bitter gourd (TR) v1

Overview


Name	MS002729
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold66: 57083 .. 57625 (-)
RNA-Seq Expression	MS002729
Synteny	MS002729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCTCAGGCTCTTGCTGTTCCACAATCCAACCCTCCTCCTTCCCTCCTCCCCTTCCTCACCGCGTTCTCGATCGTCATCCTCATCTTCATCTCCATCGTCATCTTCTCCGTGCTCGCCTCGTTTGCCATCATCATCCTCATCTACATCATTTGCCAATACCTGGTCGGTCCGACGAGCTTCACCGACCTCGAAGCTGGCGAGGAAGAGGACAACCGAGATGAGATTCTGATATCTCGTCAAGCTCGGCACGGTGGAGATGTGTGGAGGGAGGTTTTGGAGAGGAAGAGGGAGGTTTTGGAGAAAAAAGTTATGGCGGCTCCTGTGAGGTATGGGAGCCCCGAAATGGAAATGGAAATGGAAATGGCAGCCAATTATTGCATTGATTGTGCAATTTGTTTGGAGGATTTTGAAAGTGGAGAGCTTTGCCAGATTTTTCCTGTGTGTAATCACATTTTTCATTATTCTTGCATTCATCATTGGTTGAAGAGGAACACGACTTGCCCCATTTGTCGATGTTCCATTTTGAAAGACGAGTCT

mRNA sequence

ATGATTCCTCAGGCTCTTGCTGTTCCACAATCCAACCCTCCTCCTTCCCTCCTCCCCTTCCTCACCGCGTTCTCGATCGTCATCCTCATCTTCATCTCCATCGTCATCTTCTCCGTGCTCGCCTCGTTTGCCATCATCATCCTCATCTACATCATTTGCCAATACCTGGTCGGTCCGACGAGCTTCACCGACCTCGAAGCTGGCGAGGAAGAGGACAACCGAGATGAGATTCTGATATCTCGTCAAGCTCGGCACGGTGGAGATGTGTGGAGGGAGGTTTTGGAGAGGAAGAGGGAGGTTTTGGAGAAAAAAGTTATGGCGGCTCCTGTGAGGTATGGGAGCCCCGAAATGGAAATGGAAATGGAAATGGCAGCCAATTATTGCATTGATTGTGCAATTTGTTTGGAGGATTTTGAAAGTGGAGAGCTTTGCCAGATTTTTCCTGTGTGTAATCACATTTTTCATTATTCTTGCATTCATCATTGGTTGAAGAGGAACACGACTTGCCCCATTTGTCGATGTTCCATTTTGAAAGACGAGTCT

Coding sequence (CDS)

ATGATTCCTCAGGCTCTTGCTGTTCCACAATCCAACCCTCCTCCTTCCCTCCTCCCCTTCCTCACCGCGTTCTCGATCGTCATCCTCATCTTCATCTCCATCGTCATCTTCTCCGTGCTCGCCTCGTTTGCCATCATCATCCTCATCTACATCATTTGCCAATACCTGGTCGGTCCGACGAGCTTCACCGACCTCGAAGCTGGCGAGGAAGAGGACAACCGAGATGAGATTCTGATATCTCGTCAAGCTCGGCACGGTGGAGATGTGTGGAGGGAGGTTTTGGAGAGGAAGAGGGAGGTTTTGGAGAAAAAAGTTATGGCGGCTCCTGTGAGGTATGGGAGCCCCGAAATGGAAATGGAAATGGAAATGGCAGCCAATTATTGCATTGATTGTGCAATTTGTTTGGAGGATTTTGAAAGTGGAGAGCTTTGCCAGATTTTTCCTGTGTGTAATCACATTTTTCATTATTCTTGCATTCATCATTGGTTGAAGAGGAACACGACTTGCCCCATTTGTCGATGTTCCATTTTGAAAGACGAGTCT

Protein sequence

MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTDLEAGEEEDNRDEILISRQARHGGDVWREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES

Homology

[Close]

BLAST of MS002729 vs. NCBI nr
Match: KAA0060638.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 6.6e-53
Identity = 125/199 (62.81%), Postives = 148/199 (74.37%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     +DLEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHH 180
            +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI H
Sbjct: 121 IEKV-AAPVSYGSSEVVAK-------CIDCAICLEDFENGELCQNFPVCNHIFHYSCIQH 180

[Close]

BLAST of MS002729 vs. NCBI nr
Match: KAG6577373.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 7.9e-46
Identity = 112/183 (61.20%), Postives = 124/183 (67.76%), Query Frame = 0


Query: 9   PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD---- 68
           P  NPPPS+LPFLT+FSI+ILIF+SI+IFSVLASFAII+L+Y IC+YLV PT   +    
Sbjct: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICKYLVHPTYLDEHDPV 63

Query: 69  LEAGEEEDN-----RDEILISRQARHGGDV----WREVLERK--REVLEKKVMAAPVRYG 128
           L A E   N     R  IL+S   RHGGDV    WRE LERK  RE   KK     V YG
Sbjct: 64  LVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALKKTTTVLVSYG 123

Query: 129 SPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR 177
           S E       A    +DCAICLEDFE GELCQIFPVCNHIFHY CI  WLK+N TCPICR
Sbjct: 124 SSE-------ATAKFVDCAICLEDFEKGELCQIFPVCNHIFHYCCIQRWLKKNMTCPICR 179

[Close]

BLAST of MS002729 vs. NCBI nr
Match: KAG7027690.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-44
Identity = 109/186 (58.60%), Postives = 124/186 (66.67%), Query Frame = 0


Query: 9   PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD---- 68
           P  NPPPS+LPFLT+FSI+ILIF+SI+IFSVLASFAII+L+Y IC+YLV PT   +    
Sbjct: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPI 63

Query: 69  LEAGEEEDN-----RDEILISRQARHGGDV----WREVLERK--REVLEKKVMAAPVRYG 128
           L A E   N     R  IL+S   RHGGDV    WRE LERK  RE   +K     V YG
Sbjct: 64  LVADERNQNQSQSTRTRILVSHPTRHGGDVENASWREGLERKGLREQALEKTTTVLVSYG 123

Query: 129 SPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR 180
           S E       A    +DCAICLEDFE GELCQIFPVCNHIFHY CI  WLK+N TCPIC 
Sbjct: 124 SSE-------ATAKFVDCAICLEDFEKGELCQIFPVCNHIFHYCCIQRWLKKNMTCPICH 182

[Close]

BLAST of MS002729 vs. NCBI nr
Match: KAG6600727.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 110/190 (57.89%), Postives = 133/190 (70.00%), Query Frame = 0


Query: 1   MIPQAL-AVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGP 60
           MIPQAL  VPQSNPPPS LPFLTAFSIVI+I ISIVIFS+LASF+III I+++CQYL+G 
Sbjct: 1   MIPQALTTVPQSNPPPSTLPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60

Query: 61  TSF----TDLEAGEEEDNRDEILISRQ--ARHGGDVWREVLER-------KREVLEKKVM 120
           T+      D+EAGE   N+++ +  R   +R+  ++WRE LER       +R  +  K M
Sbjct: 61  TNLDGHHLDVEAGERNQNQNQTMRGRSLVSRYESNIWREALERTMAERKGRRAQIVMK-M 120

Query: 121 AAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRN 177
           A  VRYG        E+AA Y  DCAICLE+FE+GE CQIF VC HIFHYSCI  WL+RN
Sbjct: 121 ATRVRYGC------SEVAAKY-TDCAICLEEFENGEDCQIFVVCKHIFHYSCIQRWLRRN 180

[Close]

BLAST of MS002729 vs. NCBI nr
Match: TYK02232.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-34
Identity = 104/184 (56.52%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     +DLEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHH 166
            +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPV            
Sbjct: 121 IEKV-AAPVSYGSSEVVAK-------CIDCAICLEDFENGELCQNFPV------------ 162

[Close]

BLAST of MS002729 vs. ExPASy Swiss-Prot
Match: Q9C919 (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 11  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLE 70
           S+     +  ++   + + I + I++  ++A+ A+I++IY+I   ++ P   T    DLE
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLDLDLE 61

Query: 71  AG-EEEDNRDEILISRQARHGG----DVWREVLER--KREVLEKKVMAAPVRYGSPEMEM 130
            G +    R  I+        G    D  RE  +R  K+ V+E  +    V  G+ E + 
Sbjct: 62  IGVQRGQQRARIVTYHTIISTGLRLPDFEREGKKRGLKQSVIETLLPKLLVGQGNHEEDE 121

Query: 131 EMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR 174
           E  + +    +CAICL  +   E C++FPVC HI+H  CI  WLK + TCP CR
Sbjct: 122 EKSLESR---ECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCR 172

[Close]

BLAST of MS002729 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 124 AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL 178
           AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Sbjct: 150 AAN-CRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of MS002729 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 130 DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES 182
           +CAICL +FE GE  Q+   C H FH  CIH WL   ++CP CR SI    S
Sbjct: 106 ECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHS 157

[Close]

BLAST of MS002729 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 130 DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES 182
           +C ICL  FE GE  ++ P C+H +H  C+  WLK  ++CP+CR SI  D S
Sbjct: 106 ECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSS 157

[Close]

BLAST of MS002729 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 129 IDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI 177
           ++CAICL + E  E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Sbjct: 122 LECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]

BLAST of MS002729 vs. ExPASy TrEMBL
Match: A0A5A7UZF7 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005240 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.2e-53
Identity = 125/199 (62.81%), Postives = 148/199 (74.37%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     +DLEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHH 180
            +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI H
Sbjct: 121 IEKV-AAPVSYGSSEVVAK-------CIDCAICLEDFENGELCQNFPVCNHIFHYSCIQH 180

[Close]

BLAST of MS002729 vs. ExPASy TrEMBL
Match: A0A0A0L6M6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.4e-53
Identity = 123/198 (62.12%), Postives = 147/198 (74.24%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFI+I+IFSV+ASFAII+ IY+IC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     ++LEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHH 180
            +KV AAPV YGS E       AA  CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI H
Sbjct: 121 IEKV-AAPVSYGSSE-------AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQH 180

[Close]

BLAST of MS002729 vs. ExPASy TrEMBL
Match: A0A5D3BTV2 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00260 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 104/184 (56.52%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     +DLEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHH 166
            +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPV            
Sbjct: 121 IEKV-AAPVSYGSSEVVAK-------CIDCAICLEDFENGELCQNFPV------------ 162

[Close]

BLAST of MS002729 vs. ExPASy TrEMBL
Match: E5GBS2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.7e-34
Identity = 99/168 (58.93%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPT 60
           MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV--------WREVLERKREVL 120
           S     +DLEAGE  +N     R  IL++  + + HG D+        WRE +E  R ++
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGME--RTIM 120

Query: 121 EKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPV 150
            +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FP+
Sbjct: 121 IEKV-AAPVSYGSSEVVAK-------CIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of MS002729 vs. ExPASy TrEMBL
Match: A0A251PMJ1 (RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G182700 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 0


Query: 14  PPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGP---TSFTDLEAGEE 73
           PP +   LT    +I +++ I+ FS++ S  +I L Y++C+++  P       D EAG+E
Sbjct: 46  PPPVFSLLTFIGTIIFVYVCIIAFSIILSLLVIALFYVVCEFVWTPLYERRNRDPEAGDE 105

Query: 74  ----EDNRDE-----------ILISRQARHGGDVWREVLE--------RKREVLEKKVMA 133
               + NR+E           +L + +     D   EVLE        R RE L +  + 
Sbjct: 106 RLSFQPNREEWHDQATFYQAAVLHNLRVLEILDSIVEVLEERRDQRHQRDREQLLENKLP 165

Query: 134 APVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNT 178
            P+ YGS E+EM        C DC IC+EDFE+ +LCQ+FP CNH FH  C++ WLK++ 
Sbjct: 166 PPIAYGSHEIEMN-------CKDCVICMEDFETDQLCQVFPSCNHTFHSKCMNTWLKKSL 225

[Close]

BLAST of MS002729 vs. TAIR 10
Match: AT1G53010.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 11  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLE 70
           S+     +  ++   + + I + I++  ++A+ A+I++IY+I   ++ P   T    DLE
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLDLDLE 61

Query: 71  AG-EEEDNRDEILISRQARHGG----DVWREVLER--KREVLEKKVMAAPVRYGSPEMEM 130
            G +    R  I+        G    D  RE  +R  K+ V+E  +    V  G+ E + 
Sbjct: 62  IGVQRGQQRARIVTYHTIISTGLRLPDFEREGKKRGLKQSVIETLLPKLLVGQGNHEEDE 121

Query: 131 EMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR 174
           E  + +    +CAICL  +   E C++FPVC HI+H  CI  WLK + TCP CR
Sbjct: 122 EKSLESR---ECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCR 172

[Close]

BLAST of MS002729 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 124 AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL 178
           AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Sbjct: 150 AAN-CRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of MS002729 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 124 AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL 178
           AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Sbjct: 150 AAN-CRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of MS002729 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-11
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 130 DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES 182
           +CAICL +FE GE  Q+   C H FH  CIH WL   ++CP CR SI    S
Sbjct: 106 ECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHS 157

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BLAST of MS002729 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-11
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 130 DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES 182
           +C ICL  FE GE  ++ P C+H +H  C+  WLK  ++CP+CR SI  D S
Sbjct: 106 ECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSS 157

The following BLAST results are available for this feature:

BLAST of MS002729 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060638.1	6.6e-53	62.81	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
KAG6577373.1	7.9e-46	61.20	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7027690.1	5.6e-44	58.60	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6600727.1	1.1e-42	57.89	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
TYK02232.1	2.4e-34	56.52	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]

BLAST of MS002729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C919	2.5e-10	30.46	Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 P...	[more]
Q67YI6	4.2e-10	50.00	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9FGJ6	4.2e-10	50.00	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9SRM0	1.2e-09	46.15	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q8W571	1.6e-09	45.83	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]

BLAST of MS002729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZF7	3.2e-53	62.81	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0L6M6	9.4e-53	62.12	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 P...	[more]
A0A5D3BTV2	1.1e-34	56.52	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
E5GBS2	5.7e-34	58.93	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A251PMJ1	1.2e-20	36.84	RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G182700 ...	[more]

BLAST of MS002729 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53010.1	1.8e-11	30.46	RING/U-box superfamily protein	[more]
AT3G18930.1	3.0e-11	50.00	RING/U-box superfamily protein	[more]
AT3G18930.2	3.0e-11	50.00	RING/U-box superfamily protein	[more]
AT5G47610.1	3.0e-11	50.00	RING/U-box superfamily protein	[more]
AT3G11110.1	8.8e-11	46.15	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..172 e-value: 1.8E-6 score: 37.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 130..173 e-value: 5.2E-13 score: 49.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 131..173 score: 12.946621
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 91..178 e-value: 2.8E-18 score: 67.4
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..176
None	No IPR available	PANTHER	PTHR45798:SF72	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 14..176
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 130..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002729.1	MS002729.1	mRNA