MS002664 (gene) Bitter gourd (TR) v1

Overview


Name	MS002664
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	scaffold928: 124336 .. 124527 (-)
RNA-Seq Expression	MS002664
Synteny	MS002664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCGCGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCTGTAAGATTT

mRNA sequence

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCGCGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCTGTAAGATTT

Coding sequence (CDS)

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCGCGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCTGTAAGATTT

Protein sequence

DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAPPVRF

Homology

[Close]

BLAST of MS002664 vs. NCBI nr
Match: XP_022139562.1 (RPM1-interacting protein 4 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. NCBI nr
Match: KAG7037321.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.4e-27
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

Query: 61 PVRF 65
          PVR+
Sbjct: 63 PVRY 66

[Close]

BLAST of MS002664 vs. NCBI nr
Match: KAG7030269.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

Query: 61 PVRF 65
          PVR+
Sbjct: 63 PVRY 66

[Close]

BLAST of MS002664 vs. NCBI nr
Match: XP_022941007.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-interacting protein 4-like [Cucurbita maxima] >XP_023525056.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6607743.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. NCBI nr
Match: XP_038897827.1 (protein NOI4 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP ADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-19
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 62

Query: 61 KAPPVRF 65
          K  P ++
Sbjct: 63 KPQPKKW 68

[Close]

BLAST of MS002664 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-06
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG 38
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

[Close]

BLAST of MS002664 vs. ExPASy TrEMBL
Match: A0A6J1CEA3 (RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. ExPASy TrEMBL
Match: A0A6J1J2H2 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480718 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.9e-26
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. ExPASy TrEMBL
Match: A0A6J1FL74 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446421 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.9e-26
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. ExPASy TrEMBL
Match: A0A6J1ID15 (uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. ExPASy TrEMBL
Match: A0A6J1IGN4 (uncharacterized protein LOC111474733 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

Query: 61 PVRF 65
          P ++
Sbjct: 63 PKKW 66

[Close]

BLAST of MS002664 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-21
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 62

Query: 61 KAPPVR 64
          K  PV+
Sbjct: 63 KPQPVK 67

[Close]

BLAST of MS002664 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-21
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 61 KAPPVR 64
          K  PV+
Sbjct: 79 KPQPVK 83

[Close]

BLAST of MS002664 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-21
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 61 KAPPVRF 65
          K  P ++
Sbjct: 79 KPQPKKW 84

[Close]

BLAST of MS002664 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-19
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK 46
          DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of MS002664 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 43
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

The following BLAST results are available for this feature:

BLAST of MS002664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139562.1	4.9e-27	95.31	RPM1-interacting protein 4 [Momordica charantia]	[more]
KAG7037321.1	6.4e-27	93.75	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7030269.1	1.4e-26	93.75	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941007.1	1.2e-25	90.63	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-intera...	[more]
XP_038897827.1	2.1e-25	90.63	protein NOI4 [Benincasa hispida]	[more]

BLAST of MS002664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	1.0e-19	74.63	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	5.0e-06	54.05	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of MS002664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEA3	2.4e-27	95.31	RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 S...	[more]
A0A6J1J2H2	5.9e-26	90.63	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480718 PE=4...	[more]
A0A6J1FL74	5.9e-26	90.63	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446421 PE...	[more]
A0A6J1ID15	1.3e-25	90.63	uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IGN4	1.3e-25	90.63	uncharacterized protein LOC111474733 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS002664 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	2.5e-21	77.27	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	2.5e-21	77.27	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	7.3e-21	74.63	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	9.0e-19	91.11	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.6e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 1..36 e-value: 7.4E-23 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..64
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 2..60
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002664.1	MS002664.1	mRNA