MS002652 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEVVGPYSP Homology
BLAST of MS002652 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27 Identity = 68/112 (60.71%), Postives = 83/112 (74.11%), Query Frame = 0
BLAST of MS002652 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus]) HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26 Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 0
BLAST of MS002652 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23 Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 0
BLAST of MS002652 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa]) HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of MS002652 vs. NCBI nr
Match: PON32972.1 (hypothetical protein PanWU01x14_356530 [Parasponia andersonii]) HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16 Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0
BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 7.0e-27 Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 0
BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2N9HXD0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44657 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17 Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0
BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2P5A8U7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16 Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0
BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2P5ELH4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_179150 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 3.3e-16 Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0
BLAST of MS002652 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08 Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0
BLAST of MS002652 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 53.9 bits (128), Expect = 9.4e-08 Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 0
BLAST of MS002652 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05 Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0
BLAST of MS002652 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05 Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0
BLAST of MS002652 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04 Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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