MS002652 (gene) Bitter gourd (TR) v1

Overview
NameMS002652
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine-rich protein-related
Locationscaffold928: 23121 .. 23450 (-)
RNA-Seq ExpressionMS002652
SyntenyMS002652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT

mRNA sequence

ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT

Coding sequence (CDS)

ATGGATCATAAACCAGATCGCAAGGCCCCTAGACCTAACGACAGAAACCAAATGAACGGCAAAATGACATTCTCAGAGTTCAGTTTGGAGGATCTGAAACGAAGCCCTCACCTGATCGTGTCGTCCCCGTCGCAATCGCAATCGCAATCCATGGCGACGAAGGGCTCCTCTCCGGCGAAGGGCAACTGCCTCTGCTCCCCGACCACTCACATCGGATCCTTCCGCTGCCGGCACCACAGGCACTCCGGCTTGGCCCGCGGCGTCTCCGTCGGCTCCCATCTCTCCGAGTTGGCCCGTAAATCCGCCGAAGTCGTCGGCCCCTACTCCCCT

Protein sequence

MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEVVGPYSP
Homology
BLAST of MS002652 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27
Identity = 68/112 (60.71%), Postives = 83/112 (74.11%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMN--GKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSP 60
           MDHKPD +APRP DRN  N   K  F++F LED K+  +L+ SSP    S+S+A K  S 
Sbjct: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP----SRSLAPKAPSS 60

Query: 61  AKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEVVGPYSP 111
           AK +CLCSPTTHIGSFRCRHHRH+G+ RG SVGS+LSELA KS +++  YSP
Sbjct: 61  AKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

BLAST of MS002652 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNG----------KMTFSEFSLEDLKRSPHLIVSSPSQSQSQS 60
           MD+K D +APRPNDRN  N           KM F++ +LEDLK++P ++V   S S   S
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILV---SPSPPSS 60

Query: 61  MATKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEVVGPYSP 111
           +A +  S AK NCLCSPTTHIGSFRCRHHRHSG+ RG SVGS+LS+L RK  E+VG +SP
Sbjct: 61  IAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of MS002652 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQM--NGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSP 60
           MDHKPD +APRP  R+ +  + K+ F++F LEDLKRSP ++VS    S  Q    K S  
Sbjct: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQ----KVSPA 60

Query: 61  AKGNCLCSPTTHIGSFRCRHHRHS-GLARGVSVGSHLSELARKSAEVVG 107
           AKG+CLCSPTTHIGSFRCRHHR S G+ RG SVGS+LS+L RKS+E +G
Sbjct: 61  AKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105

BLAST of MS002652 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 22  MTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAKGNCLCSPTTHIGSFRCRHHRH 81
           M  +E +L DLK + H ++ SPS     S ATK  S AK NCLCSPTTHIGSFRCRHHRH
Sbjct: 1   MAITELNLADLKHNNHHLLVSPS---PPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRH 60

Query: 82  SGLARGVSVGSHLSELARKSAEVVGPYSP 111
           +G+ RG SVGS+LS+LARK  E++GP+SP
Sbjct: 61  AGMIRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of MS002652 vs. NCBI nr
Match: PON32972.1 (hypothetical protein PanWU01x14_356530 [Parasponia andersonii])

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAK 60
           MD K  +++  P+ +   N K+   E +LE+LK+  H++V SP   Q+ ++ TK SS  +
Sbjct: 1   MDEKVVQRS--PSSQKMKNYKLNIPEINLEELKKHTHILVVSPRGVQAPAV-TKSSS-TR 60

Query: 61  GNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEV 105
            NCLCSPTTH GSFRCRHHR SG+ RG SVGS+LSELARKS  +
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKSGAI 100

BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.0e-27
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNG----------KMTFSEFSLEDLKRSPHLIVSSPSQSQSQS 60
           MD+K D +APRPNDRN  N           KM F++ +LEDLK++P ++V   S S   S
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILV---SPSPPSS 60

Query: 61  MATKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEVVGPYSP 111
           +A +  S AK NCLCSPTTHIGSFRCRHHRHSG+ RG SVGS+LS+L RK  E+VG +SP
Sbjct: 61  IAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 22  MTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAKGNCLCSPTTHIGSFRCRHHRH 81
           M  +E +L DLK + H ++ SPS     S ATK  S AK NCLCSPTTHIGSFRCRHHRH
Sbjct: 1   MAITELNLADLKHNNHHLLVSPS---PPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRH 60

Query: 82  SGLARGVSVGSHLSELARKSAEVVGPYSP 111
           +G+ RG SVGS+LS+LARK  E++GP+SP
Sbjct: 61  AGMIRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2N9HXD0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44657 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAK 60
           MD   ++K P+ N   +MN K+  +EFSL+DLK S HL+VS  SQ+ S   + +      
Sbjct: 1   MDENVEQKPPKIN-LKEMNRKIKIAEFSLDDLKNS-HLLVSPTSQASSGKQSARWK---- 60

Query: 61  GNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEV 105
            NCLCSPTTH+GSFRCRHHR+ G+ RG SVGSHLS LA KS  +
Sbjct: 61  -NCLCSPTTHVGSFRCRHHRNPGMHRGASVGSHLSALAAKSGPI 97

BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2P5A8U7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAK 60
           MD K  +++  P+ +   N K+   E +LE+LK+  H++V SP   Q+ ++ TK SS  +
Sbjct: 1   MDEKVVQRS--PSSQKMKNYKLNIPEINLEELKKHTHILVVSPRGVQAPAV-TKSSS-TR 60

Query: 61  GNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEV 105
            NCLCSPTTH GSFRCRHHR SG+ RG SVGS+LSELARKS  +
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKSGAI 100

BLAST of MS002652 vs. ExPASy TrEMBL
Match: A0A2P5ELH4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_179150 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.3e-16
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0

Query: 1   MDHKPDRKAPRPNDRNQMNGKMTFSEFSLEDLKRSPHLIVSSPSQSQSQSMATKGSSPAK 60
           MD K  +++  P+     N K+   E +LE+LK+  H++V SP + Q+ ++ TK SS  +
Sbjct: 1   MDDKVVQRS--PSSPKMKNYKLNIPEINLEELKKHTHILVVSPRRVQAPAV-TKSSS-TR 60

Query: 61  GNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHLSELARKSAEV 105
            NCLCSPTTH GSFRCRHHR SG+ RG SVGS+LSELARKS  +
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKSGAI 100

BLAST of MS002652 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 21  KMTFSEFSLEDLKR------SPHLIVSSPSQSQSQSMATKGSSPAKGNCLCSPTTHIGSF 80
           K T ++ S +D+KR      SP   V         S+    SS  + NCLC+PTTH GSF
Sbjct: 19  KETEADVSQDDIKRQEAYNMSPR--VRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSF 78

Query: 81  RCRHHRHS---GLARGVSVGSHLSELA 99
           RCR+HR +   G++RG SV S+LS LA
Sbjct: 79  RCRYHRRNAGLGMSRGTSVPSNLSMLA 103

BLAST of MS002652 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-08
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 33 KRSPHLIVSSPSQ-SQSQSMATKGSSPAKG---NCLCSPTTHIGSFRCRHHRHSGLARGV 92
          K S    V S SQ + S S+    SS  K    NCLCSPTTH GSFRCR+HR   L R  
Sbjct: 30 KPSGSSTVESKSQDNNSPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAG 89

Query: 93 SVGSHLSEL 98
          S+GS+L+ L
Sbjct: 90 SIGSNLAVL 98

BLAST of MS002652 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 53 TKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSV 91
          ++ +S  K NCLCSPTTH GSFRCR HR   L R  S+
Sbjct: 34 SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

BLAST of MS002652 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 53 TKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSV 91
          ++ +S  K NCLCSPTTH GSFRCR HR   L R  S+
Sbjct: 34 SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

BLAST of MS002652 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 53 TKGSSPAKGNCLCSPTTHIGSFRCRHHRHSGLARGVSVGSHL 95
          ++ +S  K  C+CSPTTH GSF+C+ HR   L R  SV +++
Sbjct: 22 SRQTSITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024984.18.5e-2760.71hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN44385.11.4e-2656.67hypothetical protein Csa_015645 [Cucumis sativus][more]
KAG6607735.17.4e-2359.63hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0048240.12.0e-2061.80putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D... [more]
PON32972.13.9e-1651.92hypothetical protein PanWU01x14_356530 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3W37.0e-2756.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1[more]
A0A5A7TYF39.8e-2161.80Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A2N9HXD01.7e-1752.88Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44657 PE=4 SV=1[more]
A0A2P5A8U71.9e-1651.92Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE... [more]
A0A2P5ELH43.3e-1651.92Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_179150 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT3G13227.12.5e-0843.68serine-rich protein-related [more]
AT5G55980.19.4e-0850.72serine-rich protein-related [more]
AT1G67910.12.0e-0557.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.22.0e-0557.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G24577.18.2e-0445.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..63
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 26..102
NoneNo IPR availablePANTHERPTHR33132:SF48BNACNNG68960D PROTEINcoord: 26..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002652.1MS002652.1mRNA