MS002621 (gene) Bitter gourd (TR) v1

Overview


Name	MS002621
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription initiation factor TFIID subunit 14b
Location	scaffold111: 225908 .. 226126 (-)
RNA-Seq Expression	MS002621
Synteny	MS002621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTCCACAGTGATGTATTTGATAAACAGTTAAATCTGTTTCACCATTTCATGTTGTACCCTAAAGATGAGTTTGGTCCACAAACAAGGAAACCTGTTGTGGAATCCTACAATGAAATTGTGTTTCCTAATCCATCAGATTTTTTCCCTTTTTGGCTCGTATCCAGAGCCTCCATCTATTGTTGTCCCAGCTTCCTTGATTTTAATTTGCCTAAT

mRNA sequence

CTTCTTTTCCACAGTGATGTATTTGATAAACAGTTAAATCTGTTTCACCATTTCATGTTGTACCCTAAAGATGAGTTTGGTCCACAAACAAGGAAACCTGTTGTGGAATCCTACAATGAAATTGTGTTTCCTAATCCATCAGATTTTTTCCCTTTTTGGCTCGTATCCAGAGCCTCCATCTATTGTTGTCCCAGCTTCCTTGATTTTAATTTGCCTAAT

Coding sequence (CDS)

CTTCTTTTCCACAGTGATGTATTTGATAAACAGTTAAATCTGTTTCACCATTTCATGTTGTACCCTAAAGATGAGTTTGGTCCACAAACAAGGAAACCTGTTGTGGAATCCTACAATGAAATTGTGTTTCCTAATCCATCAGATTTTTTCCCTTTTTGGCTCGTATCCAGAGCCTCCATCTATTGTTGTCCCAGCTTCCTTGATTTTAATTTGCCTAAT

Protein sequence

LLFHSDVFDKQLNLFHHFMLYPKDEFGPQTRKPVVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN

Homology

[Close]

BLAST of MS002621 vs. NCBI nr
Match: XP_022979048.1 (transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 126 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFARVQNHP 185

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 186 AVVVPRLPAGFNLPN 200

[Close]

BLAST of MS002621 vs. NCBI nr
Match: XP_008440808.1 (PREDICTED: transcription initiation factor TFIID subunit 14b isoform X1 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 129 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 188

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 189 AVVVPRLPAGFNLPN 203

[Close]

BLAST of MS002621 vs. NCBI nr
Match: XP_004134869.1 (transcription initiation factor TFIID subunit 14b [Cucumis sativus] >KGN48904.1 hypothetical protein Csa_004327 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 129 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 188

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 189 AVVVPRLPAGFNLPN 203

[Close]

BLAST of MS002621 vs. NCBI nr
Match: XP_016899133.1 (PREDICTED: transcription initiation factor TFIID subunit 14b isoform X2 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 114 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 173

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 174 AVVVPRLPAGFNLPN 188

[Close]

BLAST of MS002621 vs. NCBI nr
Match: XP_022979050.1 (transcription initiation factor TFIID subunit 14b-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 126 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFARVQNHP 185

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 186 AVVVPRLPAGFNLPN 200

[Close]

BLAST of MS002621 vs. ExPASy Swiss-Prot
Match: Q9FH40 (Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana OX=3702 GN=TAF14B PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-11
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF 51
           L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Sbjct: 124 LHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 175

[Close]

BLAST of MS002621 vs. ExPASy Swiss-Prot
Match: F4IPK2 (Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana OX=3702 GN=TAF14 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF 51
           + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Sbjct: 120 VFFHTDVCEKKLELSHVLKLNPENAYGPIPKSIKIPVVAESYNEVVFPDPFESF 173

[Close]

BLAST of MS002621 vs. ExPASy TrEMBL
Match: A0A5A7SJ54 (Transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001410 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 129 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 188

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 189 AVVVPRLPAGFNLPN 203

[Close]

BLAST of MS002621 vs. ExPASy TrEMBL
Match: A0A6J1IV07 (transcription initiation factor TFIID subunit 14b-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478805 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 126 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFARVQNHP 185

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 186 AVVVPRLPAGFNLPN 200

[Close]

BLAST of MS002621 vs. ExPASy TrEMBL
Match: A0A6J1IS36 (transcription initiation factor TFIID subunit 14b-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478805 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 126 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFARVQNHP 185

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 186 AVVVPRLPAGFNLPN 200

[Close]

BLAST of MS002621 vs. ExPASy TrEMBL
Match: A0A0A0KJC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505820 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 129 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 188

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 189 AVVVPRLPAGFNLPN 203

[Close]

BLAST of MS002621 vs. ExPASy TrEMBL
Match: A0A1S3B2R3 (transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485117 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRA 60
           L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  
Sbjct: 129 LFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHP 188

Query: 61  SIYCCPSFLDFNLPN 74
           ++        FNLPN
Sbjct: 189 AVVVPRLPAGFNLPN 203

[Close]

BLAST of MS002621 vs. TAIR 10
Match: AT5G45600.1 (YEATS family protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF 51
           L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Sbjct: 124 LHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 175

[Close]

BLAST of MS002621 vs. TAIR 10
Match: AT5G45600.2 (YEATS family protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF 51
           L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Sbjct: 123 LHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 174

[Close]

BLAST of MS002621 vs. TAIR 10
Match: AT2G18000.1 (TBP-associated factor 14 )

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF 51
           + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Sbjct: 120 VFFHTDVCEKKLELSHVLKLNPENAYGPIPKSIKIPVVAESYNEVVFPDPFESF 173

[Close]

BLAST of MS002621 vs. TAIR 10
Match: AT2G18000.2 (TBP-associated factor 14 )

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF 51
           + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Sbjct: 120 VFFHTDVCEKKLELSHVLKLNPENAYGPIPKSIKIPVVAESYNEVVFPDPFESF 173

The following BLAST results are available for this feature:

BLAST of MS002621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979048.1	2.3e-12	58.67	transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita max...	[more]
XP_008440808.1	2.3e-12	58.67	PREDICTED: transcription initiation factor TFIID subunit 14b isoform X1 [Cucumis...	[more]
XP_004134869.1	2.3e-12	58.67	transcription initiation factor TFIID subunit 14b [Cucumis sativus] >KGN48904.1 ...	[more]
XP_016899133.1	2.3e-12	58.67	PREDICTED: transcription initiation factor TFIID subunit 14b isoform X2 [Cucumis...	[more]
XP_022979050.1	2.3e-12	58.67	transcription initiation factor TFIID subunit 14b-like isoform X2 [Cucurbita max...	[more]

BLAST of MS002621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH40	3.4e-11	67.31	Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana OX=370...	[more]
F4IPK2	4.8e-05	46.30	Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS002621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJ54	1.1e-12	58.67	Transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo var...	[more]
A0A6J1IV07	1.1e-12	58.67	transcription initiation factor TFIID subunit 14b-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1IS36	1.1e-12	58.67	transcription initiation factor TFIID subunit 14b-like isoform X2 OS=Cucurbita m...	[more]
A0A0A0KJC2	1.1e-12	58.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505820 PE=4 SV=1	[more]
A0A1S3B2R3	1.1e-12	58.67	transcription initiation factor TFIID subunit 14b isoform X3 OS=Cucumis melo OX=...	[more]

BLAST of MS002621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45600.1	2.4e-12	67.31	YEATS family protein	[more]
AT5G45600.2	2.4e-12	67.31	YEATS family protein	[more]
AT2G18000.1	3.4e-06	46.30	TBP-associated factor 14	[more]
AT2G18000.2	3.4e-06	46.30	TBP-associated factor 14	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23195:SF44	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B	coord: 1..60
IPR005033	YEATS	PANTHER	PTHR23195	YEATS DOMAIN	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002621.1	MS002621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated