MS002606 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGGGCGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATTTGGCTCATGGTGTTGCTCATCATGGAGCAGGATATCCTCCAGGAGCAGGATATCCCCCACCTGGAGGGTATCCTCCACCTCATGGCTATCCACCACAAGGATATCCCCCGGCACACGGCTACCCCCCGGCTGGCTATCCCCCGGGCGCTTATCCTCCCGGCGCATACCCTCCCGGTGCATATCCTGGACCCTCTGCACCACACCATGCAGGTACTGATCCAATTTTACATACATGTATCAGAATTATTTTGGAAGCATCAGGGTTTTAGAACTTTGGAATCGCCCTGTAACCTGTAGAAGCAAAACTTTTGTCTTCAATTACAGTTTGCCTGGGCTGCAGGAATTTTCTGCTGTCTGATATCTGTATACTAAAGTTTACAATTATCCAACATTTTCCATACATATCTCAATTTGTTATTGGACCACATCATACCTCCTGGACAATAGGAAATTACTCAAATTTTCCAAGGAACACGGGGATTCTTGATTATAGTTGATTGTGTATCTTTTGTAAAGTTGTTCATTCCAATTAATCTAAAATTCAGGGCACGGAGTAGCGGGAATGCTCGCCGGTGGTGCTGCCGCTGCGGCAGCTGCTTATGGCGCTCATCATGTCGCCCATGGCGCCGGTCATTACCCCCATGGCGCTGCTCATTACGGGCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCATGGGAAGTTTGGGAAGCACAAACATGGGAAGCACGGGATGTATGGTGGAGGGAAATTCAAGAAGTGGAAG ATGGGGGGCGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATTTGGCTCATGGTGTTGCTCATCATGGAGCAGGATATCCTCCAGGAGCAGGATATCCCCCACCTGGAGGGTATCCTCCACCTCATGGCTATCCACCACAAGGATATCCCCCGGCACACGGCTACCCCCCGGCTGGCTATCCCCCGGGCGCTTATCCTCCCGGCGCATACCCTCCCGGTGCATATCCTGGACCCTCTGCACCACACCATGCAGGGCACGGAGTAGCGGGAATGCTCGCCGGTGGTGCTGCCGCTGCGGCAGCTGCTTATGGCGCTCATCATGTCGCCCATGGCGCCGGTCATTACCCCCATGGCGCTGCTCATTACGGGCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCATGGGAAGTTTGGGAAGCACAAACATGGGAAGCACGGGATGTATGGTGGAGGGAAATTCAAGAAGTGGAAG ATGGGGGGCGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATTTGGCTCATGGTGTTGCTCATCATGGAGCAGGATATCCTCCAGGAGCAGGATATCCCCCACCTGGAGGGTATCCTCCACCTCATGGCTATCCACCACAAGGATATCCCCCGGCACACGGCTACCCCCCGGCTGGCTATCCCCCGGGCGCTTATCCTCCCGGCGCATACCCTCCCGGTGCATATCCTGGACCCTCTGCACCACACCATGCAGGGCACGGAGTAGCGGGAATGCTCGCCGGTGGTGCTGCCGCTGCGGCAGCTGCTTATGGCGCTCATCATGTCGCCCATGGCGCCGGTCATTACCCCCATGGCGCTGCTCATTACGGGCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCATGGGAAGTTTGGGAAGCACAAACATGGGAAGCACGGGATGTATGGTGGAGGGAAATTCAAGAAGTGGAAG MGGGKDKHDESDKGLFSHLAHGVAHHGAGYPPGAGYPPPGGYPPPHGYPPQGYPPAHGYPPAGYPPGAYPPGAYPPGAYPGPSAPHHAGHGVAGMLAGGAAAAAAAYGAHHVAHGAGHYPHGAAHYGHGGKFKHHGKFKHGKFGKHKHGKHGMYGGGKFKKWK Homology
BLAST of MS002606 vs. NCBI nr
Match: XP_022136842.1 (glycine-rich protein A3-like [Momordica charantia] >XP_022136843.1 glycine-rich protein A3-like [Momordica charantia] >XP_022136844.1 glycine-rich protein A3-like [Momordica charantia]) HSP 1 Score: 323.6 bits (828), Expect = 1.0e-84 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of MS002606 vs. NCBI nr
Match: XP_008451874.1 (PREDICTED: glycine-rich protein A3-like [Cucumis melo] >KAA0040186.1 glycine-rich protein A3-like [Cucumis melo var. makuwa] >TYK16456.1 glycine-rich protein A3-like [Cucumis melo var. makuwa]) HSP 1 Score: 275.4 bits (703), Expect = 3.2e-70 Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of MS002606 vs. NCBI nr
Match: XP_023553494.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68 Identity = 150/173 (86.71%), Postives = 153/173 (88.44%), Query Frame = 0
BLAST of MS002606 vs. NCBI nr
Match: XP_022931474.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022931475.1 glycine-rich protein A3-like [Cucurbita moschata] >XP_022931476.1 glycine-rich protein A3-like [Cucurbita moschata] >XP_022931477.1 glycine-rich protein A3-like [Cucurbita moschata] >KAG7015107.1 hypothetical protein SDJN02_22740, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68 Identity = 149/173 (86.13%), Postives = 152/173 (87.86%), Query Frame = 0
BLAST of MS002606 vs. NCBI nr
Match: XP_004150942.2 (glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_014664 [Cucumis sativus]) HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68 Identity = 147/173 (84.97%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of MS002606 vs. ExPASy Swiss-Prot
Match: P37705 (Glycine-rich protein A3 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 6.1e-24 Identity = 91/154 (59.09%), Postives = 101/154 (65.58%), Query Frame = 0
BLAST of MS002606 vs. ExPASy Swiss-Prot
Match: P09241 (Rhodopsin OS=Enteroctopus dofleini OX=267067 GN=RHO PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05 Identity = 43/88 (48.86%), Postives = 48/88 (54.55%), Query Frame = 0
BLAST of MS002606 vs. ExPASy Swiss-Prot
Match: P31356 (Rhodopsin OS=Todarodes pacificus OX=6637 GN=RHO PE=1 SV=2) HSP 1 Score: 50.1 bits (118), Expect = 2.8e-05 Identity = 34/50 (68.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of MS002606 vs. ExPASy Swiss-Prot
Match: O16005 (Rhodopsin OS=Sepia officinalis OX=6610 GN=RHO PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 4.8e-05 Identity = 39/73 (53.42%), Postives = 40/73 (54.79%), Query Frame = 0
BLAST of MS002606 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 6.3e-05 Identity = 32/52 (61.54%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of MS002606 vs. ExPASy TrEMBL
Match: A0A6J1C8M2 (glycine-rich protein A3-like OS=Momordica charantia OX=3673 GN=LOC111008440 PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 4.9e-85 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of MS002606 vs. ExPASy TrEMBL
Match: A0A5A7TDL9 (Glycine-rich protein A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002540 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.5e-70 Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of MS002606 vs. ExPASy TrEMBL
Match: A0A1S3BRX9 (glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.5e-70 Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of MS002606 vs. ExPASy TrEMBL
Match: A0A6J1ETR5 (glycine-rich protein A3-like OS=Cucurbita moschata OX=3662 GN=LOC111437642 PE=4 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68 Identity = 149/173 (86.13%), Postives = 152/173 (87.86%), Query Frame = 0
BLAST of MS002606 vs. ExPASy TrEMBL
Match: A0A0A0KV55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68 Identity = 147/173 (84.97%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of MS002606 vs. TAIR 10
Match: AT4G19200.1 (proline-rich family protein ) HSP 1 Score: 142.9 bits (359), Expect = 2.3e-34 Identity = 112/193 (58.03%), Postives = 119/193 (61.66%), Query Frame = 0
BLAST of MS002606 vs. TAIR 10
Match: AT1G31750.1 (proline-rich family protein ) HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31 Identity = 99/165 (60.00%), Postives = 106/165 (64.24%), Query Frame = 0
BLAST of MS002606 vs. TAIR 10
Match: AT5G45350.1 (proline-rich family protein ) HSP 1 Score: 131.0 bits (328), Expect = 9.0e-31 Identity = 107/195 (54.87%), Postives = 115/195 (58.97%), Query Frame = 0
BLAST of MS002606 vs. TAIR 10
Match: AT5G45350.2 (proline-rich family protein ) HSP 1 Score: 131.0 bits (328), Expect = 9.0e-31 Identity = 107/195 (54.87%), Postives = 115/195 (58.97%), Query Frame = 0
BLAST of MS002606 vs. TAIR 10
Match: AT5G17650.1 (glycine/proline-rich protein ) HSP 1 Score: 128.6 bits (322), Expect = 4.4e-30 Identity = 94/179 (52.51%), Postives = 107/179 (59.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|