MS002522 (gene) Bitter gourd (TR) v1

Overview
NameMS002522
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVacuolar sorting-associated protein 62
Locationscaffold318: 781740 .. 781877 (-)
RNA-Seq ExpressionMS002522
SyntenyMS002522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAGTTCCGTTAAGCTATCTGAGGAAGGGGTGAATAAATCCTGGGGCCATAAACCAGTCTCGTTTGTGCTTACTATTGCTACTGGTGGTGTAGCTTTGAGTGCTTTAGACGACCTCGCCATTTATCATAGCTGTAGC

mRNA sequence

AGCAGTTCCGTTAAGCTATCTGAGGAAGGGGTGAATAAATCCTGGGGCCATAAACCAGTCTCGTTTGTGCTTACTATTGCTACTGGTGGTGTAGCTTTGAGTGCTTTAGACGACCTCGCCATTTATCATAGCTGTAGC

Coding sequence (CDS)

AGCAGTTCCGTTAAGCTATCTGAGGAAGGGGTGAATAAATCCTGGGGCCATAAACCAGTCTCGTTTGTGCTTACTATTGCTACTGGTGGTGTAGCTTTGAGTGCTTTAGACGACCTCGCCATTTATCATAGCTGTAGC

Protein sequence

SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS
Homology
[Close]
BLAST of MS002522 vs. NCBI nr
Match: XP_023547893.1 (uncharacterized protein LOC111806704 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 53 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 98

[Close]
BLAST of MS002522 vs. NCBI nr
Match: XP_022991411.1 (uncharacterized protein LOC111488050 isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 20 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 65

[Close]
BLAST of MS002522 vs. NCBI nr
Match: XP_022991412.1 (uncharacterized protein LOC111488050 isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 19 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 64

[Close]
BLAST of MS002522 vs. NCBI nr
Match: KAG7014597.1 (hypothetical protein SDJN02_24776 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 24 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 69

[Close]
BLAST of MS002522 vs. NCBI nr
Match: XP_023547892.1 (uncharacterized protein LOC111806704 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 54 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 99

[Close]
BLAST of MS002522 vs. ExPASy TrEMBL
Match: A0A6J1JLR1 (uncharacterized protein LOC111488050 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488050 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 19 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 64

[Close]
BLAST of MS002522 vs. ExPASy TrEMBL
Match: A0A6J1JQM9 (uncharacterized protein LOC111488050 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488050 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 20 SSSVRPSEEGVNKSWGRKAVSFVLVTVTGGVALSALDDLAIYHSCS 65

[Close]
BLAST of MS002522 vs. ExPASy TrEMBL
Match: A0A6J1GQQ6 (uncharacterized protein LOC111456591 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456591 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG   VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 19 SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCS 64

[Close]
BLAST of MS002522 vs. ExPASy TrEMBL
Match: A0A6J1GQN1 (uncharacterized protein LOC111456591 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456591 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSSV+ SEEGVNKSWG   VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 20 SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCS 65

[Close]
BLAST of MS002522 vs. ExPASy TrEMBL
Match: A0A6J1DUL5 (uncharacterized protein LOC111024183 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024183 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  SSSVKLSEEGVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          SSS+K +EEGVNK WG K VSFVL   TGGVALSALDDLAIYHSCS
Sbjct: 20 SSSIKPAEEGVNKFWGRKAVSFVLITVTGGVALSALDDLAIYHSCS 65

[Close]
BLAST of MS002522 vs. TAIR 10
Match: AT2G20390.1 (unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 7.4e-07
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 10 GVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          G   S+G K VSFVL   TGGVALSALDDL+IY  CS
Sbjct: 23 GTLGSFGRKAVSFVLITVTGGVALSALDDLSIYRGCS 59

[Close]
BLAST of MS002522 vs. TAIR 10
Match: AT2G20390.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 49.7 bits (117), Expect = 7.4e-07
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 10 GVNKSWGHKPVSFVLTIATGGVALSALDDLAIYHSCS 47
          G   S+G K VSFVL   TGGVALSALDDL+IY  CS
Sbjct: 23 GTLGSFGRKAVSFVLITVTGGVALSALDDLSIYRGCS 59

The following BLAST results are available for this feature:
BLAST of MS002522 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023547893.12.1e-1184.78uncharacterized protein LOC111806704 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022991411.12.1e-1184.78uncharacterized protein LOC111488050 isoform X1 [Cucurbita maxima][more]
XP_022991412.12.1e-1184.78uncharacterized protein LOC111488050 isoform X2 [Cucurbita maxima][more]
KAG7014597.12.1e-1184.78hypothetical protein SDJN02_24776 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023547892.12.1e-1184.78uncharacterized protein LOC111806704 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of MS002522 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS002522 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLR11.0e-1184.78uncharacterized protein LOC111488050 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JQM91.0e-1184.78uncharacterized protein LOC111488050 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1GQQ63.8e-1182.61uncharacterized protein LOC111456591 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GQN13.8e-1182.61uncharacterized protein LOC111456591 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1DUL58.6e-1180.43uncharacterized protein LOC111024183 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of MS002522 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20390.17.4e-0767.57unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bac... [more]
AT2G20390.27.4e-0767.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002522.1MS002522.1mRNA