MS002519 (gene) Bitter gourd (TR) v1

Overview


Name	MS002519
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II reaction center Psb28 protein
Location	scaffold318: 771308 .. 771841 (-)
RNA-Seq Expression	MS002519
Synteny	MS002519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCTGCATTCTCTGGCGTCCACCACCTCCACTGCTTCTTCGCATCTGCATCTCCTTCCGTCCACCAAATTAACCCTCCACCGGAGCTCCCTCTCCACGTTCCACGGCCGCTCTCTCACTCTCAAACTCACTCTCGGGAGTGCGTCCAGATGCCAGACGCTGAGGCGGCGCAGATTCTGCATCGCGATGGTGCAGCCGAAGATTCAGTTCATCCAGGGCACCGACGAGCAGACGGTGCCCGACGTGAGGCTGACCAAATCCCGGGACGGGAGCAACGGGATGGCCATATTCAGGTTCGAGCAGCCGTCGGTGTTCGACTCCTCGGCGGAGGTTGGGGACATCACGGGCTTCTACATGATCGACGAGGAAGGGGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCGTCAACGGGAAGCCCGCCGGAATCGAGGCCAAGTACGTGATGCGCACCCCCAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGCTACTCCAACGCCAATGGCCTGCAGTTCGTCAAGAAA

mRNA sequence

ATGGCGACTCTGCATTCTCTGGCGTCCACCACCTCCACTGCTTCTTCGCATCTGCATCTCCTTCCGTCCACCAAATTAACCCTCCACCGGAGCTCCCTCTCCACGTTCCACGGCCGCTCTCTCACTCTCAAACTCACTCTCGGGAGTGCGTCCAGATGCCAGACGCTGAGGCGGCGCAGATTCTGCATCGCGATGGTGCAGCCGAAGATTCAGTTCATCCAGGGCACCGACGAGCAGACGGTGCCCGACGTGAGGCTGACCAAATCCCGGGACGGGAGCAACGGGATGGCCATATTCAGGTTCGAGCAGCCGTCGGTGTTCGACTCCTCGGCGGAGGTTGGGGACATCACGGGCTTCTACATGATCGACGAGGAAGGGGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCGTCAACGGGAAGCCCGCCGGAATCGAGGCCAAGTACGTGATGCGCACCCCCAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGCTACTCCAACGCCAATGGCCTGCAGTTCGTCAAGAAA

Coding sequence (CDS)

ATGGCGACTCTGCATTCTCTGGCGTCCACCACCTCCACTGCTTCTTCGCATCTGCATCTCCTTCCGTCCACCAAATTAACCCTCCACCGGAGCTCCCTCTCCACGTTCCACGGCCGCTCTCTCACTCTCAAACTCACTCTCGGGAGTGCGTCCAGATGCCAGACGCTGAGGCGGCGCAGATTCTGCATCGCGATGGTGCAGCCGAAGATTCAGTTCATCCAGGGCACCGACGAGCAGACGGTGCCCGACGTGAGGCTGACCAAATCCCGGGACGGGAGCAACGGGATGGCCATATTCAGGTTCGAGCAGCCGTCGGTGTTCGACTCCTCGGCGGAGGTTGGGGACATCACGGGCTTCTACATGATCGACGAGGAAGGGGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCGTCAACGGGAAGCCCGCCGGAATCGAGGCCAAGTACGTGATGCGCACCCCCAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGCTACTCCAACGCCAATGGCCTGCAGTTCGTCAAGAAA

Protein sequence

MATLHSLASTTSTASSHLHLLPSTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of MS002519 vs. NCBI nr
Match: XP_022157494.1 (photosystem II reaction center Psb28 protein [Momordica charantia])

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-91
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR 60
           MATLHSLASTTSTASSHLHLLP TKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR
Sbjct: 1   MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR 60

Query: 61  FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY 120
           FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY
Sbjct: 61  FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY 120

Query: 121 MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 179
           MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK
Sbjct: 121 MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 178

[Close]

BLAST of MS002519 vs. NCBI nr
Match: XP_008459971.1 (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo] >KAA0039893.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa] >TYK24609.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 146/188 (77.66%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MA+L SLASTTS +S HL    STKL    +LH S+ S+FHGRSL+L     S ++C TL
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSL-----STTKCHTL 60

Query: 61  RRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS 120
            RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIFRF+QPSVFDSS
Sbjct: 61  TRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 179
           AEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

[Close]

BLAST of MS002519 vs. NCBI nr
Match: XP_038875127.1 (photosystem II reaction center Psb28 protein [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66
Identity = 148/187 (79.14%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHL-HLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQT 60
           MA L SL S TS AS H+ H  PSTK+    TLHRS+ S+FHGRSL+L     SA  CQT
Sbjct: 1   MAALQSLVS-TSHASPHMHHHHPSTKVFPSATLHRSAFSSFHGRSLSL-----SAGNCQT 60

Query: 61  LRRRR----FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSA 120
           L  R       I MVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIFRF+QPSVFDSSA
Sbjct: 61  LTHRNGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 179
           EVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

[Close]

BLAST of MS002519 vs. NCBI nr
Match: XP_011656766.1 (photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 8.8e-66
Identity = 142/188 (75.53%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTK----LTLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MA+L SLASTTS +S HL    STK     +LH S+ S+FHGRSL+L     S ++C TL
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSL-----STTKCHTL 103

Query: 61  RRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS 120
            RR +       I MV PKIQFIQGTDEQT+PDVRLTKSRDG+NGMAIFRFEQPSVFDSS
Sbjct: 104 TRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 163

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 179
           AEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 164 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 223

[Close]

BLAST of MS002519 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 143/192 (74.48%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MATL SLAST      HLH   STK+    TLHRS+ S F+GRSL++     S  +CQTL
Sbjct: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSV-----SGGKCQTL 60

Query: 61  RRRRF----------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSV 120
            RRRF           + MV+PKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIF+F++PSV
Sbjct: 61  GRRRFEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSV 120

Query: 121 FDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMER 179
           FDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMER
Sbjct: 121 FDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMER 180

[Close]

BLAST of MS002519 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 6.8e-53
Identity = 107/145 (73.79%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 34  STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGS 93
           S+F G SL  + T   AS  ++    +  +   +P IQFIQGTDEQT+PDVRLTKSRDG+
Sbjct: 37  SSFGGVSLQCRRT-KPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGT 96

Query: 94  NGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRT 153
           NG+AIF F+QPSVFDSSAE+GDITGFYMID+EGV+QSVDV+AKFVNGKPA IEAKYVMRT
Sbjct: 97  NGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRT 156

Query: 154 PREWDRFMRFMERYSNANGLQFVKK 179
           PREWDRFMRFMERYS ANGLQFVKK
Sbjct: 157 PREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of MS002519 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 7.8e-49
Identity = 106/183 (57.92%), Postives = 132/183 (72.13%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQT 60
           MA + S+ S TS   S  + +P + + L   S+     S+F G  ++L     S+     
Sbjct: 1   MACVRSIGSLTSVNHSQRN-VPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALR 60

Query: 61  LRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGD 120
             +      MV+P +QFIQGTDE T+PDV+LT+SRDGSNGMA+F F+QPSVFDSS EVG+
Sbjct: 61  PMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGE 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 179
           ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQF
Sbjct: 121 ITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQF 180

[Close]

BLAST of MS002519 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 67/113 (59.29%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 66  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDE 125
           ++ KIQFI+G DE+ +PDVRLT+SRDGS G A FRF+ P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 126 EGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 178
           EG +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of MS002519 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35
Identity = 67/113 (59.29%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 66  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDE 125
           ++ KIQFI+G DE+ +PDVRLT+S+DGS G A FRF+ P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 126 EGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 178
           EG++++ DVNA+FVNGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of MS002519 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 70  IQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEV-GDITGFYMIDEEGVI 129
           IQFIQG +E  +PDVRLT+SRDGS G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 130 QSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 178
            + DVNA+FVNGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of MS002519 vs. ExPASy TrEMBL
Match: A0A6J1DWM5 (Photosystem II reaction center Psb28 protein OS=Momordica charantia OX=3673 GN=LOC111024184 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR 60
           MATLHSLASTTSTASSHLHLLP TKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR
Sbjct: 1   MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR 60

Query: 61  FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY 120
           FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY
Sbjct: 61  FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFY 120

Query: 121 MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 179
           MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK
Sbjct: 121 MIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 178

[Close]

BLAST of MS002519 vs. ExPASy TrEMBL
Match: A0A5A7TA18 (Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001560 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.8e-68
Identity = 146/188 (77.66%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MA+L SLASTTS +S HL    STKL    +LH S+ S+FHGRSL+L     S ++C TL
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSL-----STTKCHTL 60

Query: 61  RRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS 120
            RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIFRF+QPSVFDSS
Sbjct: 61  TRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 179
           AEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

[Close]

BLAST of MS002519 vs. ExPASy TrEMBL
Match: A0A1S3CCN2 (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.8e-68
Identity = 146/188 (77.66%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MA+L SLASTTS +S HL    STKL    +LH S+ S+FHGRSL+L     S ++C TL
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSL-----STTKCHTL 60

Query: 61  RRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS 120
            RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIFRF+QPSVFDSS
Sbjct: 61  TRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 179
           AEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

[Close]

BLAST of MS002519 vs. ExPASy TrEMBL
Match: A0A0A0K9C2 (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 142/188 (75.53%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTK----LTLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MA+L SLASTTS +S HL    STK     +LH S+ S+FHGRSL+L     S ++C TL
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSL-----STTKCHTL 253

Query: 61  RRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS 120
            RR +       I MV PKIQFIQGTDEQT+PDVRLTKSRDG+NGMAIFRFEQPSVFDSS
Sbjct: 254 TRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 313

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 179
           AEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 314 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 373

[Close]

BLAST of MS002519 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.5e-66
Identity = 143/192 (74.48%), Postives = 155/192 (80.73%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTL 60
           MATL SLAST      HLH   STK+    TLHRS+ S F+GRSL++     S  +CQTL
Sbjct: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSV-----SGGKCQTL 99

Query: 61  RRRR----------FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSV 120
            RRR            + MVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIF+F++PSV
Sbjct: 100 GRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSV 159

Query: 121 FDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMER 179
           FDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMER
Sbjct: 160 FDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMER 219

[Close]

BLAST of MS002519 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.0e-51
Identity = 91/114 (79.82%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 65  MVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDE 124
           MV+P +QFIQGTDE T+PDV+LT+SRDGSNGMA+F F+QPSVFDSS EVG+ITG YMIDE
Sbjct: 84  MVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDE 143

Query: 125 EGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 179
           EGVIQS DVNA+FVNGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQFVKK
Sbjct: 144 EGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 197

[Close]

BLAST of MS002519 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 194.9 bits (494), Expect = 5.5e-50
Identity = 106/183 (57.92%), Postives = 132/183 (72.13%), Query Frame = 0


Query: 1   MATLHSLASTTSTASSHLHLLPSTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQT 60
           MA + S+ S TS   S  + +P + + L   S+     S+F G  ++L     S+     
Sbjct: 1   MACVRSIGSLTSVNHSQRN-VPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALR 60

Query: 61  LRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGD 120
             +      MV+P +QFIQGTDE T+PDV+LT+SRDGSNGMA+F F+QPSVFDSS EVG+
Sbjct: 61  PMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGE 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 179
           ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQF
Sbjct: 121 ITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQF 180

The following BLAST results are available for this feature:

BLAST of MS002519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157494.1	3.5e-91	99.44	photosystem II reaction center Psb28 protein [Momordica charantia]	[more]
XP_008459971.1	1.6e-67	77.66	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
XP_038875127.1	1.8e-66	79.14	photosystem II reaction center Psb28 protein [Benincasa hispida]	[more]
XP_011656766.1	8.8e-66	75.53	photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]	[more]
XP_023514182.1	1.1e-65	74.48	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]

BLAST of MS002519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	6.8e-53	73.79	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	7.8e-49	57.92	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	1.7e-35	59.29	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	2.2e-35	59.29	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	1.9e-34	63.30	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of MS002519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWM5	1.7e-91	99.44	Photosystem II reaction center Psb28 protein OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7TA18	7.8e-68	77.66	Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CCN2	7.8e-68	77.66	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K9C2	4.3e-66	75.53	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A6J1KY50	9.5e-66	74.48	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of MS002519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.2	5.0e-51	79.82	photosystem II reaction center PSB28 protein	[more]
AT4G28660.1	5.5e-50	57.92	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 70..175 e-value: 2.3E-43 score: 146.8
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 70..176 e-value: 1.3E-45 score: 152.1
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..178
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 67..176 score: 30.556362
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 68..178 e-value: 7.9E-46 score: 156.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002519.1	MS002519.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex