MS002498 (gene) Bitter gourd (TR) v1

Overview
NameMS002498
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-protein homolog
Locationscaffold318: 538755 .. 539180 (-)
RNA-Seq ExpressionMS002498
SyntenyMS002498
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGCAGCCATGAGGCTTCATAAGAGCTGCATTCTGTGGCTAGTGATAGTCATTTTTATGAGTAGTGAATCAACACAGGTAAGTGAGGCAATTCTCGATAAGTTTTACGTGCAAATTGTCAACGGCTTTGACAACGAAACCATCGGGGCACATTGTAGGTCGAAAGACGATGACCTAGGGAATCAATTTCTCTCGGTTGGACGAGATTTTCGATGGCATTTTCGATCAAATATATTTGGGACGACACTGTTCTATTGTCACCTATGGCGGACCCAAGGGCACATTACATTCTTAGTGTTTTGGGATGACAACATGTTTATAAGAACTAAGTGTGGAGATGGCATTTGTCGATGGACAGTCCGACCAGATGGAATTTATAGCTATAATGTTAAGGACAATCAATATGTTCGACAGTACAAATGGAAA

mRNA sequence

GCAGCAGCCATGAGGCTTCATAAGAGCTGCATTCTGTGGCTAGTGATAGTCATTTTTATGAGTAGTGAATCAACACAGGTAAGTGAGGCAATTCTCGATAAGTTTTACGTGCAAATTGTCAACGGCTTTGACAACGAAACCATCGGGGCACATTGTAGGTCGAAAGACGATGACCTAGGGAATCAATTTCTCTCGGTTGGACGAGATTTTCGATGGCATTTTCGATCAAATATATTTGGGACGACACTGTTCTATTGTCACCTATGGCGGACCCAAGGGCACATTACATTCTTAGTGTTTTGGGATGACAACATGTTTATAAGAACTAAGTGTGGAGATGGCATTTGTCGATGGACAGTCCGACCAGATGGAATTTATAGCTATAATGTTAAGGACAATCAATATGTTCGACAGTACAAATGGAAA

Coding sequence (CDS)

GCAGCAGCCATGAGGCTTCATAAGAGCTGCATTCTGTGGCTAGTGATAGTCATTTTTATGAGTAGTGAATCAACACAGGTAAGTGAGGCAATTCTCGATAAGTTTTACGTGCAAATTGTCAACGGCTTTGACAACGAAACCATCGGGGCACATTGTAGGTCGAAAGACGATGACCTAGGGAATCAATTTCTCTCGGTTGGACGAGATTTTCGATGGCATTTTCGATCAAATATATTTGGGACGACACTGTTCTATTGTCACCTATGGCGGACCCAAGGGCACATTACATTCTTAGTGTTTTGGGATGACAACATGTTTATAAGAACTAAGTGTGGAGATGGCATTTGTCGATGGACAGTCCGACCAGATGGAATTTATAGCTATAATGTTAAGGACAATCAATATGTTCGACAGTACAAATGGAAA

Protein sequence

AAAMRLHKSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKWK
Homology
BLAST of MS002498 vs. NCBI nr
Match: XP_031745088.1 (S-protein homolog 3-like [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 8.6e-40
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0

Query: 4   MRLHKSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQF 63
           M + KS I+ LVI I +S+E TQVS A+ +KFYV I+NGFDN TIGAHCRSKDDDLGNQF
Sbjct: 1   MGIRKSYIILLVISIALSAELTQVSSALFEKFYVHIINGFDNATIGAHCRSKDDDLGNQF 60

Query: 64  LSVGRDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPD 123
           + V  +F W+FR+N  GTTLFYCH+W   GHIT+  +W +N F  ++CGDG CRW   P 
Sbjct: 61  IPVNAEFHWNFRTNFLGTTLFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQ 120

Query: 124 GIYSYNVKDNQYVRQYKWK 143
           G+ SY V D + +    WK
Sbjct: 121 GVSSYFV-DQKRISPNSWK 138

BLAST of MS002498 vs. NCBI nr
Match: KAE8646226.1 (hypothetical protein Csa_016670 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 8.6e-40
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0

Query: 4   MRLHKSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQF 63
           M + KS I+ LVI I +S+E TQVS A+ +KFYV I+NGFDN TIGAHCRSKDDDLGNQF
Sbjct: 1   MGIRKSYIILLVISIALSAELTQVSSALFEKFYVHIINGFDNATIGAHCRSKDDDLGNQF 60

Query: 64  LSVGRDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPD 123
           + V  +F W+FR+N  GTTLFYCH+W   GHIT+  +W +N F  ++CGDG CRW   P 
Sbjct: 61  IPVNAEFHWNFRTNFLGTTLFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQ 120

Query: 124 GIYSYNVKDNQYVRQYKWK 143
           G+ SY V D + +    WK
Sbjct: 121 GVSSYFV-DQKRISPNSWK 138

BLAST of MS002498 vs. NCBI nr
Match: KAA0050599.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 0

Query: 8   KSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVG 67
           KS I+ LVI   +S+E TQVS A  DKFYV I+NGFDN TIGAHCRSKDDDL NQF+ V 
Sbjct: 5   KSFIILLVISTALSTELTQVSNAFFDKFYVHIINGFDNATIGAHCRSKDDDLSNQFIPVN 64

Query: 68  RDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYS 127
            +F+WHFR+N FGTTLFYCH+W   G IT+  +W +N F  + CGDG CRW   P GI  
Sbjct: 65  GEFQWHFRTNFFGTTLFYCHVWWIGGQITYKAYWHENDFELSVCGDGHCRWKADPQGISC 124

Query: 128 YNVKDNQYVRQYKWK 143
           Y V   +Y   Y W+
Sbjct: 125 YFVDQKRYALTYLWE 139

BLAST of MS002498 vs. NCBI nr
Match: KAE7997940.1 (hypothetical protein FH972_002526 [Carpinus fangiana])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 12  LWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVGRDFR 71
           L LV++++MS  ST  S  +L K+ V I NGF N+T+   C+S+DDDLG Q + V  +F+
Sbjct: 9   LMLVLILYMSQPSTTYS--LLKKYGVDIFNGFQNQTLSIRCQSEDDDLGIQHIPVNGEFQ 68

Query: 72  WHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVK 131
           WHFR N +GTTL++C++W + GH    VFW DN FI   CGD  CRW  + DGIY Y  K
Sbjct: 69  WHFRINYWGTTLYFCYMWWSGGHRRLDVFWADNKFIVDDCGDSDCRWMGKEDGIYLYISK 128

Query: 132 DNQYVRQYKWK 143
            N+Y  Q +W+
Sbjct: 129 HNEYRLQSRWE 137

BLAST of MS002498 vs. NCBI nr
Match: KAE7997939.1 (hypothetical protein FH972_002525 [Carpinus fangiana])

HSP 1 Score: 137.9 bits (346), Expect = 6.9e-29
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 12  LWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVGRDFR 71
           L LV++++MS  ST  S  +L K+ V + NGF N+T+   C+S+DDDLG Q + V  +F+
Sbjct: 9   LMLVLILYMSQPSTTYS--LLKKYGVDVFNGFQNQTLSIRCQSEDDDLGIQHIPVNGEFQ 68

Query: 72  WHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVK 131
           WHFR N +GTTL++C++W + GH    VFW DN FI   CGD  CRW  + DGIY Y  K
Sbjct: 69  WHFRINYWGTTLYFCYMWWSGGHRRLDVFWADNKFIVDDCGDSDCRWMGKEDGIYLYISK 128

Query: 132 DNQYVRQYKWK 143
            N+Y  Q +W+
Sbjct: 129 HNEYRLQSRWE 137

BLAST of MS002498 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 32  LDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHLWR 91
           + ++ V +VNG    ET+  HC+SK+DDLG   L     F W+F  N+  +T F+C++ +
Sbjct: 38  ISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK 97

Query: 92  TQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKWK 143
             GH+   VFWDD + +  +CG   C WT + DG+Y +N    + V   KW+
Sbjct: 98  DNGHMNVNVFWDD-VILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWE 148

BLAST of MS002498 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-15
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 32  LDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHLWR 91
           + ++ V + NG    ET+  HC+SK++DLG+  L     F W+F  N+  +TLF+C++ +
Sbjct: 38  ISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK 97

Query: 92  TQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKWK 143
             GH+   VFWDD + +  +C    C WT + DG+Y +N    + V   KWK
Sbjct: 98  DDGHMNVKVFWDD-VILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWK 148

BLAST of MS002498 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0

Query: 11  ILWLVIVIFMSSESTQVSEAILDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRD 70
           +++L+I I  S   T           V+I N   D  T+  HC+S DDDLG + L+    
Sbjct: 13  VIYLLIKIAFSQVKTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGS 72

Query: 71  FRWHFRSNIFGTTLFYCHL-WRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSY 130
           + + FR++I GTTLFYCH  W  Q    F ++ DD   +R+      C W +   G   +
Sbjct: 73  WSFKFRTSIVGTTLFYCHFTWPGQSK-RFDIYDDDRDGVRSHISCINCIWDISIQGPCMF 132

Query: 131 NVKDNQYVRQYKW 142
           +  D+ +   Y W
Sbjct: 133 SESDHAFNICYDW 144

BLAST of MS002498 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 37  VQIVNGFDNE-TIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHL-WRTQGH 96
           V+I N   N+ T+  HC+SKDDDLGN+ L  G  + + F    FG TL++C   W  + H
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 97  ITFLVFWD------DNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKW 142
            +F ++ D      DN     KC    C W +R +G   +N +  Q+   Y W
Sbjct: 110 -SFDIYKDHRDSGGDN-----KCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

BLAST of MS002498 vs. ExPASy Swiss-Prot
Match: Q40975 (Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 0

Query: 17  VIFMSSESTQVSEAILDKFYVQIVNGFDN-ETIGAHCRSKDDDLGNQFLSVGRDFRWHFR 76
           VI + S     S        V+I+N   N  +IG HCRSKD+DL NQ ++ G D  + FR
Sbjct: 6   VIVLLSFFLSKSSGFFPVIEVRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDMSFSFR 65

Query: 77  SNIFGTTLFYCHL-WRTQ---GHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYN 130
            + F TT FYC L W  +   G  ++    DD+     +C    C W +  DG+Y ++
Sbjct: 66  EDFFHTTHFYCDLQWDKETKFGFYSYQAKRDDD----GRCSSQ-CLWKIMDDGLYGFD 118

BLAST of MS002498 vs. ExPASy TrEMBL
Match: A0A0A0K4G8 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_7G333910 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0

Query: 4   MRLHKSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQF 63
           M + KS I+ LVI I +S+E TQVS A+ +KFYV I+NGFDN TIGAHCRSKDDDLGNQF
Sbjct: 1   MGIRKSYIILLVISIALSAELTQVSSALFEKFYVHIINGFDNATIGAHCRSKDDDLGNQF 60

Query: 64  LSVGRDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPD 123
           + V  +F W+FR+N  GTTLFYCH+W   GHIT+  +W +N F  ++CGDG CRW   P 
Sbjct: 61  IPVNAEFHWNFRTNFLGTTLFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQ 120

Query: 124 GIYSYNVKDNQYVRQYKWK 143
           G+ SY V   +Y   Y W+
Sbjct: 121 GVSSYFVDQKRYSLTYLWQ 139

BLAST of MS002498 vs. ExPASy TrEMBL
Match: A0A5A7UAS5 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001420 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.3e-40
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 0

Query: 8   KSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVG 67
           KS I+ LVI   +S+E TQVS A  DKFYV I+NGFDN TIGAHCRSKDDDL NQF+ V 
Sbjct: 5   KSFIILLVISTALSTELTQVSNAFFDKFYVHIINGFDNATIGAHCRSKDDDLSNQFIPVN 64

Query: 68  RDFRWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYS 127
            +F+WHFR+N FGTTLFYCH+W   G IT+  +W +N F  + CGDG CRW   P GI  
Sbjct: 65  GEFQWHFRTNFFGTTLFYCHVWWIGGQITYKAYWHENDFELSVCGDGHCRWKADPQGISC 124

Query: 128 YNVKDNQYVRQYKWK 143
           Y V   +Y   Y W+
Sbjct: 125 YFVDQKRYALTYLWE 139

BLAST of MS002498 vs. ExPASy TrEMBL
Match: A0A5N6QIK7 (S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002526 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 12  LWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVGRDFR 71
           L LV++++MS  ST  S  +L K+ V I NGF N+T+   C+S+DDDLG Q + V  +F+
Sbjct: 9   LMLVLILYMSQPSTTYS--LLKKYGVDIFNGFQNQTLSIRCQSEDDDLGIQHIPVNGEFQ 68

Query: 72  WHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVK 131
           WHFR N +GTTL++C++W + GH    VFW DN FI   CGD  CRW  + DGIY Y  K
Sbjct: 69  WHFRINYWGTTLYFCYMWWSGGHRRLDVFWADNKFIVDDCGDSDCRWMGKEDGIYLYISK 128

Query: 132 DNQYVRQYKWK 143
            N+Y  Q +W+
Sbjct: 129 HNEYRLQSRWE 137

BLAST of MS002498 vs. ExPASy TrEMBL
Match: A0A5N6QH10 (S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002525 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 12  LWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVGRDFR 71
           L LV++++MS  ST  S  +L K+ V + NGF N+T+   C+S+DDDLG Q + V  +F+
Sbjct: 9   LMLVLILYMSQPSTTYS--LLKKYGVDVFNGFQNQTLSIRCQSEDDDLGIQHIPVNGEFQ 68

Query: 72  WHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVK 131
           WHFR N +GTTL++C++W + GH    VFW DN FI   CGD  CRW  + DGIY Y  K
Sbjct: 69  WHFRINYWGTTLYFCYMWWSGGHRRLDVFWADNKFIVDDCGDSDCRWMGKEDGIYLYISK 128

Query: 132 DNQYVRQYKWK 143
            N+Y  Q +W+
Sbjct: 129 HNEYRLQSRWE 137

BLAST of MS002498 vs. ExPASy TrEMBL
Match: A0A061DMI7 (S-protein homolog OS=Theobroma cacao OX=3641 GN=TCM_003121 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 0

Query: 12  LWLVIVIFMSSESTQVSEAILDKFYVQIVNGFD-NETIGAHCRSKDDDLGNQFLSVGRDF 71
           L +++V+ +    + V+ +I+++  V ++NGF  NET+ AHC+SKDDDLG   + V  +F
Sbjct: 7   LMIMLVLILCMSQSLVTYSIMNRCRVHVINGFSTNETLEAHCKSKDDDLGLHHIPVHGEF 66

Query: 72  RWHFRSNIFGTTLFYCHLWRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNV 131
           +W FR++ F  T F CH+W + G  T  VFW D+ FI  +CG G CRW  + DGIY Y+ 
Sbjct: 67  QWKFRTDFFSRTRFSCHMWWSGGQKTLDVFWVDDKFIENECGGGNCRWRSQNDGIYLYSF 126

Query: 132 KDNQYVRQYKW 142
              QY  +YKW
Sbjct: 127 VHKQYRFKYKW 137

BLAST of MS002498 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 32  LDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHLWR 91
           + ++ V +VNG    ET+  HC+SK+DDLG   L     F W+F  N+  +T F+C++ +
Sbjct: 38  ISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK 97

Query: 92  TQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKWK 143
             GH+   VFWDD + +  +CG   C WT + DG+Y +N    + V   KW+
Sbjct: 98  DNGHMNVNVFWDD-VILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWE 148

BLAST of MS002498 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 32  LDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHLWR 91
           + ++ V + NG    ET+  HC+SK++DLG+  L     F W+F  N+  +TLF+C++ +
Sbjct: 38  ISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK 97

Query: 92  TQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKWK 143
             GH+   VFWDD + +  +C    C WT + DG+Y +N    + V   KWK
Sbjct: 98  DDGHMNVKVFWDD-VILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWK 148

BLAST of MS002498 vs. TAIR 10
Match: AT3G17080.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-13
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 0

Query: 8   KSCILWLVIVIFMSSESTQVSEAILDKFYVQIVNGFDNETIGAHCRSKDDDLGNQFLSVG 67
           ++C+L+ V+V+FMS+  ++ S +++   Y  +  G     +  HC+S++DDLG Q L+ G
Sbjct: 5   ETCLLFFVMVMFMSAIMSRASTSVV--IYNDLGGGL---PLRHHCKSREDDLGYQSLAPG 64

Query: 68  RDFRWHFRSNIFGTTLFYCHL-WRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIY 127
           R + + F  +IFG TLFYC   W  + HI F ++         + G   C W +R +G  
Sbjct: 65  RSWSFGFTPDIFGRTLFYCRFSWGAESHI-FDIYKQSRDKEFQEFGCKKCEWKIRKNGPC 124

Query: 128 SYNVKDNQYVRQYKW 142
            +  K   +   Y W
Sbjct: 125 KFYKKTGMFDHCYSW 133

BLAST of MS002498 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0

Query: 11  ILWLVIVIFMSSESTQVSEAILDKFYVQIVNGF-DNETIGAHCRSKDDDLGNQFLSVGRD 70
           +++L+I I  S   T           V+I N   D  T+  HC+S DDDLG + L+    
Sbjct: 13  VIYLLIKIAFSQVKTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGS 72

Query: 71  FRWHFRSNIFGTTLFYCHL-WRTQGHITFLVFWDDNMFIRTKCGDGICRWTVRPDGIYSY 130
           + + FR++I GTTLFYCH  W  Q    F ++ DD   +R+      C W +   G   +
Sbjct: 73  WSFKFRTSIVGTTLFYCHFTWPGQSK-RFDIYDDDRDGVRSHISCINCIWDISIQGPCMF 132

Query: 131 NVKDNQYVRQYKW 142
           +  D+ +   Y W
Sbjct: 133 SESDHAFNICYDW 144

BLAST of MS002498 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 37  VQIVNGFDNE-TIGAHCRSKDDDLGNQFLSVGRDFRWHFRSNIFGTTLFYCHL-WRTQGH 96
           V+I N   N+ T+  HC+SKDDDLGN+ L  G  + + F    FG TL++C   W  + H
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 97  ITFLVFWD------DNMFIRTKCGDGICRWTVRPDGIYSYNVKDNQYVRQYKW 142
            +F ++ D      DN     KC    C W +R +G   +N +  Q+   Y W
Sbjct: 110 -SFDIYKDHRDSGGDN-----KCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031745088.18.6e-4056.83S-protein homolog 3-like [Cucumis sativus][more]
KAE8646226.18.6e-4056.83hypothetical protein Csa_016670 [Cucumis sativus][more]
KAA0050599.11.9e-3957.78pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like... [more]
KAE7997940.15.2e-2948.09hypothetical protein FH972_002526 [Carpinus fangiana][more]
KAE7997939.16.9e-2947.33hypothetical protein FH972_002525 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
F4JLS04.8e-1736.61S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1[more]
Q2HQ461.5e-1535.71S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1[more]
Q9FMQ43.3e-1031.58S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1[more]
F4JLQ59.7e-1034.51S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1[more]
Q409752.2e-0934.75Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K4G81.7e-4156.83S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_7G333910 PE=3 SV=1[more]
A0A5A7UAS59.3e-4057.78S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G0... [more]
A0A5N6QIK72.5e-2948.09S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002526 PE=3 SV=1[more]
A0A5N6QH103.3e-2947.33S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002525 PE=3 SV=1[more]
A0A061DMI72.2e-2542.75S-protein homolog OS=Theobroma cacao OX=3641 GN=TCM_003121 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16295.13.4e-1836.61S-protein homologue 1 [more]
AT4G29035.11.1e-1635.71Plant self-incompatibility protein S1 family [more]
AT3G17080.12.5e-1331.11Plant self-incompatibility protein S1 family [more]
AT5G12060.12.4e-1131.58Plant self-incompatibility protein S1 family [more]
AT4G16195.16.9e-1134.51Plant self-incompatibility protein S1 family [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 37..141
e-value: 1.4E-26
score: 93.0
IPR010264Plant self-incompatibility S1PANTHERPTHR31232FAMILY NOT NAMEDcoord: 27..127
NoneNo IPR availablePANTHERPTHR31232:SF59SUBFAMILY NOT NAMEDcoord: 27..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002498.1MS002498.1mRNA