MS002488 (gene) Bitter gourd (TR) v1

Overview


Name	MS002488
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	S-protein homolog
Location	scaffold318: 508775 .. 509215 (-)
RNA-Seq Expression	MS002488
Synteny	MS002488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACCATGGGTGCAAATGTGGTTTTGTTAGCTGTGTTGGCAGCTCTAACGGTGGCTCAGCCATTCGTGGAGGCGTTGGCGCCTACACCGTATGTTGACAAGTGGCACGTTCATGTGGTTAATGGGTTGAGCAATGCGACGTTGTTTGCACACTGCAAATCTAGAGATACCGATTTGGGAGAACATAACTTAAATCGTGGAGCTGAGATTCAATGGAGCTTTAAGGAAAACGTCTGGGGAACAACATTATTTTGGTGCTTCTTGAAAAAGTCGGGTGGCAGTGCCTCATTTGACGTCTTCTGGCGTGAGGTTGACCATCTTTGGCTCCATTACAGGTGCACCAATGATGGAACTTGTATTTGGACTGCCAAAGATGATGGGATTTACATAAGAAACATTCCTGATAATCTTGATGAACTGGTTCATAAGTGGACCAGTTCT

mRNA sequence

GAGACCATGGGTGCAAATGTGGTTTTGTTAGCTGTGTTGGCAGCTCTAACGGTGGCTCAGCCATTCGTGGAGGCGTTGGCGCCTACACCGTATGTTGACAAGTGGCACGTTCATGTGGTTAATGGGTTGAGCAATGCGACGTTGTTTGCACACTGCAAATCTAGAGATACCGATTTGGGAGAACATAACTTAAATCGTGGAGCTGAGATTCAATGGAGCTTTAAGGAAAACGTCTGGGGAACAACATTATTTTGGTGCTTCTTGAAAAAGTCGGGTGGCAGTGCCTCATTTGACGTCTTCTGGCGTGAGGTTGACCATCTTTGGCTCCATTACAGGTGCACCAATGATGGAACTTGTATTTGGACTGCCAAAGATGATGGGATTTACATAAGAAACATTCCTGATAATCTTGATGAACTGGTTCATAAGTGGACCAGTTCT

Coding sequence (CDS)

GAGACCATGGGTGCAAATGTGGTTTTGTTAGCTGTGTTGGCAGCTCTAACGGTGGCTCAGCCATTCGTGGAGGCGTTGGCGCCTACACCGTATGTTGACAAGTGGCACGTTCATGTGGTTAATGGGTTGAGCAATGCGACGTTGTTTGCACACTGCAAATCTAGAGATACCGATTTGGGAGAACATAACTTAAATCGTGGAGCTGAGATTCAATGGAGCTTTAAGGAAAACGTCTGGGGAACAACATTATTTTGGTGCTTCTTGAAAAAGTCGGGTGGCAGTGCCTCATTTGACGTCTTCTGGCGTGAGGTTGACCATCTTTGGCTCCATTACAGGTGCACCAATGATGGAACTTGTATTTGGACTGCCAAAGATGATGGGATTTACATAAGAAACATTCCTGATAATCTTGATGAACTGGTTCATAAGTGGACCAGTTCT

Protein sequence

ETMGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS

Homology

[Close]

BLAST of MS002488 vs. NCBI nr
Match: XP_022143724.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 3   MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH 62
           MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH
Sbjct: 1   MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH 60

Query: 63  NLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWT 122
           NLNRGAEIQWSFKENVWGTTLFWCFLKK GGSASFDVFWREVDHLWLHYRCTNDGTCIWT
Sbjct: 61  NLNRGAEIQWSFKENVWGTTLFWCFLKKPGGSASFDVFWREVDHLWLHYRCTNDGTCIWT 120

Query: 123 AKDDGIYIRNIPDNLDELVHKWTSS 148
           AKDDGIYIRNIPDNLDELVHKWTSS
Sbjct: 121 AKDDGIYIRNIPDNLDELVHKWTSS 145

[Close]

BLAST of MS002488 vs. NCBI nr
Match: XP_038896414.1 (S-protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 98/148 (66.22%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 3   MGAN----VVLLAVLAALTVAQ-PFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDT 62
           MG N    VVL++VL  +   Q  FV A+ P  +VDKWHVHV+NGLSN  LF HCKSRDT
Sbjct: 1   MGRNLSYLVVLMSVLFMVVHQQHVFVGAVLPPAFVDKWHVHVINGLSNGKLFVHCKSRDT 60

Query: 63  DLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGS-ASFDVFWREVDHLWLHYRCTND 122
           D+GE  +N GAEIQWSFKENVWGTTLFWCF+K   GS ASF+VFW E  H WLHYRCT  
Sbjct: 61  DIGEQYINHGAEIQWSFKENVWGTTLFWCFVKNPNGSFASFEVFWHEAQHYWLHYRCTLQ 120

Query: 123 GTCIWTAKDDGIYIRNIPDNLDELVHKW 145
           GTC WTAKDDGIY+RNIPD ++E +H+W
Sbjct: 121 GTCFWTAKDDGIYLRNIPDGIEEKIHEW 148

[Close]

BLAST of MS002488 vs. NCBI nr
Match: KAE8646235.1 (hypothetical protein Csa_015792, partial [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 7.5e-47
Identity = 82/125 (65.60%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 22  FVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGT 81
           FV A+ P   V+KWH+HV+NGLSN  L AHCKSRDTD+GE  ++ G+EIQWSFKENV+G+
Sbjct: 4   FVGAVLPPAIVNKWHIHVINGLSNGKLMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGS 63

Query: 82  TLFWCFLKKSGGS-ASFDVFWREVDHLWLHYRCTND-GTCIWTAKDDGIYIRNIPDNLDE 141
           TLFWCF++   GS +SF+VFW E  H WLHYRCT D GTC W AKDDGIY+RNIPD++DE
Sbjct: 64  TLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDE 123

Query: 142 LVHKW 145
            +H+W
Sbjct: 124 KIHEW 128

[Close]

BLAST of MS002488 vs. NCBI nr
Match: XP_022148919.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 3.0e-43
Identity = 90/148 (60.81%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 6   NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRD 65
           ++VLL VLA+L V   Q  +    +AL   P  +    WH+HVVNGLS  +LF HCKS+D
Sbjct: 34  HMVLLLVLASLLVVADQQIITQIGQALKNIPVKNPDTAWHIHVVNGLSKDSLFVHCKSKD 93

Query: 66  TDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTND 125
            D+G HNL RG EIQWSF ENVWGTTLFWCFL+K G +ASFDVFW E  H WLH+RC   
Sbjct: 94  NDVGLHNLARGFEIQWSFDENVWGTTLFWCFLRKPGATASFDVFWVESRHNWLHHRCA-I 153

Query: 126 GTCIWTAKDDGIYIRNIPDNLDELVHKW 145
            TCIW AKDDGIY+RN  D++DEL+HKW
Sbjct: 154 LTCIWIAKDDGIYLRNNSDHIDELIHKW 180

[Close]

BLAST of MS002488 vs. NCBI nr
Match: XP_022155194.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 86/142 (60.56%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 7   VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL- 66
           +VLL     L V +P V AL     +DKW++HVVNGLS NATLF HCKS+D DLG H+L 
Sbjct: 1   MVLLVFWVVLVVVRPGVVALHLPMPLDKWNIHVVNGLSNNATLFVHCKSKDDDLGYHHLI 60

Query: 67  NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAK 126
            RG E+QW+F+ N W TTL+WCF+ K     SFD FW E  H+WL YRC  DG CIWTAK
Sbjct: 61  GRGDELQWTFRINFWKTTLYWCFMHKPNADVSFDSFWVEKTHIWLTYRC-KDGICIWTAK 120

Query: 127 DDGIYIRNIPDNLDELVHKWTS 147
           DDGIY+RNIP+N DELVHKW +
Sbjct: 121 DDGIYLRNIPNNDDELVHKWNT 141

[Close]

BLAST of MS002488 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-23
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 30  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFL 89
           P + +W V VVNGL+   TLF HCKS++ DLGE NL       W+F EN+  +T FWC++
Sbjct: 36  PKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYM 95

Query: 90  KKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW 145
            K  G  + +VFW   D + L +RC     CIWTAK DG+Y+ N     D L  KW
Sbjct: 96  NKDNGHMNVNVFW---DDVILFHRC-GWKNCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of MS002488 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.9e-23
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 30  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFL 89
           P + +W V V NGL+   TLF HCKS++ DLG+ NL       W+F EN+  +TLFWC++
Sbjct: 36  PKISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYM 95

Query: 90  KKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS 147
            K  G  +  VFW   D + L +RC +   C+WTAK+DG+Y+ N     D L  KW S
Sbjct: 96  SKDDGHMNVKVFW---DDVILFHRC-DWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKS 149

[Close]

BLAST of MS002488 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 35/112 (31.25%), Postives = 52/112 (46.43%), Query Frame = 0


Query: 37  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSA 96
           V + N L +  TL  HCKS D DLG   L       + F+ ++ GTTLF+C     G S 
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 97  SFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS 148
            FD++  + D +  H  C N   CIW     G  + +  D+   + + W  +
Sbjct: 99  RFDIYDDDRDGVRSHISCIN---CIWDISIQGPCMFSESDHAFNICYDWNGN 147

[Close]

BLAST of MS002488 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 36/98 (36.73%), Postives = 47/98 (47.96%), Query Frame = 0


Query: 48  LFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWC-FLKKSGGSASFDVFWREVDH 107
           L  HCKSRD D G H L +G    W F  N   +TL++C F ++      FD++    D 
Sbjct: 44  LGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRD- 103

Query: 108 LWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW 145
                RC N   C W AK+DGIY        + L +KW
Sbjct: 104 ---SSRCRN---CTWEAKEDGIYGYGEIPKKNPLFYKW 134

[Close]

BLAST of MS002488 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 36/112 (32.14%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 37  VHVVNGLSN-ATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSA 96
           V + N L N  TL  HCKS+D DLG   L  G    +SF    +G TL++C       S 
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 97  SFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS 148
           SFD++    D      +C +D  C+W  + +G    N      +L + W  S
Sbjct: 110 SFDIYKDHRDS-GGDNKCESD-RCVWKIRRNGPCRFNDETKQFDLCYPWNKS 159

[Close]

BLAST of MS002488 vs. ExPASy TrEMBL
Match: A0A6J1CQ65 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.0e-83
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 3   MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH 62
           MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH
Sbjct: 1   MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEH 60

Query: 63  NLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWT 122
           NLNRGAEIQWSFKENVWGTTLFWCFLKK GGSASFDVFWREVDHLWLHYRCTNDGTCIWT
Sbjct: 61  NLNRGAEIQWSFKENVWGTTLFWCFLKKPGGSASFDVFWREVDHLWLHYRCTNDGTCIWT 120

Query: 123 AKDDGIYIRNIPDNLDELVHKWTSS 148
           AKDDGIYIRNIPDNLDELVHKWTSS
Sbjct: 121 AKDDGIYIRNIPDNLDELVHKWTSS 145

[Close]

BLAST of MS002488 vs. ExPASy TrEMBL
Match: A0A6J1D5G6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111017469 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.4e-43
Identity = 90/148 (60.81%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 6   NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRD 65
           ++VLL VLA+L V   Q  +    +AL   P  +    WH+HVVNGLS  +LF HCKS+D
Sbjct: 34  HMVLLLVLASLLVVADQQIITQIGQALKNIPVKNPDTAWHIHVVNGLSKDSLFVHCKSKD 93

Query: 66  TDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTND 125
            D+G HNL RG EIQWSF ENVWGTTLFWCFL+K G +ASFDVFW E  H WLH+RC   
Sbjct: 94  NDVGLHNLARGFEIQWSFDENVWGTTLFWCFLRKPGATASFDVFWVESRHNWLHHRCA-I 153

Query: 126 GTCIWTAKDDGIYIRNIPDNLDELVHKW 145
            TCIW AKDDGIY+RN  D++DEL+HKW
Sbjct: 154 LTCIWIAKDDGIYLRNNSDHIDELIHKW 180

[Close]

BLAST of MS002488 vs. ExPASy TrEMBL
Match: A0A6J1DPJ1 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022329 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.1e-43
Identity = 86/142 (60.56%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 7   VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL- 66
           +VLL     L V +P V AL     +DKW++HVVNGLS NATLF HCKS+D DLG H+L 
Sbjct: 1   MVLLVFWVVLVVVRPGVVALHLPMPLDKWNIHVVNGLSNNATLFVHCKSKDDDLGYHHLI 60

Query: 67  NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAK 126
            RG E+QW+F+ N W TTL+WCF+ K     SFD FW E  H+WL YRC  DG CIWTAK
Sbjct: 61  GRGDELQWTFRINFWKTTLYWCFMHKPNADVSFDSFWVEKTHIWLTYRC-KDGICIWTAK 120

Query: 127 DDGIYIRNIPDNLDELVHKWTS 147
           DDGIY+RNIP+N DELVHKW +
Sbjct: 121 DDGIYLRNIPNNDDELVHKWNT 141

[Close]

BLAST of MS002488 vs. ExPASy TrEMBL
Match: A0A6J1CPC6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.0e-41
Identity = 79/145 (54.48%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   ETMGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLG 60
           +T    VV+  V     V Q    A   +  + KWH+HVVNGLS  TLF HCKS+D DLG
Sbjct: 4   KTRSVTVVIFLVSEVFAVLQLGTAASLSSALLPKWHIHVVNGLSKVTLFVHCKSKDDDLG 63

Query: 61  EHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTC 120
            HNL  RG E QW+F+ N W TTL+WC+LKK     SF+ FW E  H+WL YRCT D  C
Sbjct: 64  VHNLVTRGDEFQWTFQVNFWATTLYWCYLKKPNADVSFESFWVEQTHMWLQYRCT-DKNC 123

Query: 121 IWTAKDDGIYIRNIPDNLDELVHKW 145
           IWTAKDDGIY+RN PD +DE +H+W
Sbjct: 124 IWTAKDDGIYLRNNPDGVDERIHEW 147

[Close]

BLAST of MS002488 vs. ExPASy TrEMBL
Match: A0A6J1H9E9 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111460817 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 5   ANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNL 64
           A   LL +LA+  + QP   A+   P +  W VHVVN L+NATLF HCKS+D DLG HNL
Sbjct: 56  AAAFLLGLLAS-ALTQPLAMAIGIVP-IQNWRVHVVNRLNNATLFVHCKSKDDDLGFHNL 115

Query: 65  -NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTA 124
              G+E QWSFK N+W TTLFWC L+K     SF+ FW E  H+WL+YRC + G CIWTA
Sbjct: 116 VGVGSEFQWSFKNNLWATTLFWCLLRKPNAYVSFEAFWIEKTHIWLNYRC-HGGNCIWTA 175

Query: 125 KDDGIYIRNIPDNLDELVHKW 145
           +DDG+Y+RN PD++DE VHKW
Sbjct: 176 RDDGVYLRNNPDSVDERVHKW 193

[Close]

BLAST of MS002488 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-24
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 30  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFL 89
           P + +W V VVNGL+   TLF HCKS++ DLGE NL       W+F EN+  +T FWC++
Sbjct: 36  PKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYM 95

Query: 90  KKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW 145
            K  G  + +VFW   D + L +RC     CIWTAK DG+Y+ N     D L  KW
Sbjct: 96  NKDNGHMNVNVFW---DDVILFHRC-GWKNCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of MS002488 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-24
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 30  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFL 89
           P + +W V V NGL+   TLF HCKS++ DLG+ NL       W+F EN+  +TLFWC++
Sbjct: 36  PKISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYM 95

Query: 90  KKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS 147
            K  G  +  VFW   D + L +RC +   C+WTAK+DG+Y+ N     D L  KW S
Sbjct: 96  SKDDGHMNVKVFW---DDVILFHRC-DWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKS 149

[Close]

BLAST of MS002488 vs. TAIR 10
Match: AT1G28305.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-12
Identity = 38/117 (32.48%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 37  VHVVNGL----SNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSG 96
           +H+ N L     ++ LF  CKS   D+G+H +  G   Q+  ++N W TTLFWC  +   
Sbjct: 26  LHIWNDLDPNQKHSDLFVQCKSGKADMGKHYVKYGKIYQFDIRDNFWKTTLFWCTFRHGP 85

Query: 97  G---SASFDVFWREVDHLWLHYR--CTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW 145
                  FDV+          Y+      GT  WTA++DGIY R +       VH W
Sbjct: 86  DYRTGQQFDVY---------EYKPGVAQGGTYEWTAREDGIYFR-LNQGTIHKVHNW 132

[Close]

BLAST of MS002488 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-11
Identity = 34/109 (31.19%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 39  VVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGG---SA 98
           V N L+N  L   C+S+D +LG+H L  G   + +F +NVW  TLFWC L K        
Sbjct: 26  VKNELNNKVLGVRCRSKDDNLGDHILRVGQMTKNNFDDNVWRRTLFWCNLWKGPDFKLHV 85

Query: 99  SFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW 145
           +FD +  +       ++       +W A++DGIY    P+   +  + W
Sbjct: 86  AFDAYRSQ-------WKADIGPRYLWIAREDGIYYTQHPETPPKKKYDW 127

[Close]

BLAST of MS002488 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 64.3 bits (155), Expect = 9.3e-11
Identity = 35/112 (31.25%), Postives = 52/112 (46.43%), Query Frame = 0


Query: 37  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSA 96
           V + N L +  TL  HCKS D DLG   L       + F+ ++ GTTLF+C     G S 
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 97  SFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS 148
            FD++  + D +  H  C N   CIW     G  + +  D+   + + W  +
Sbjct: 99  RFDIYDDDRDGVRSHISCIN---CIWDISIQGPCMFSESDHAFNICYDWNGN 147

The following BLAST results are available for this feature:

BLAST of MS002488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143724.1	1.5e-82	99.31	S-protein homolog 1-like [Momordica charantia]	[more]
XP_038896414.1	1.2e-52	66.22	S-protein homolog 1-like [Benincasa hispida]	[more]
KAE8646235.1	7.5e-47	65.60	hypothetical protein Csa_015792, partial [Cucumis sativus]	[more]
XP_022148919.1	3.0e-43	60.81	S-protein homolog 1-like [Momordica charantia]	[more]
XP_022155194.1	1.5e-42	60.56	S-protein homolog 1-like [Momordica charantia]	[more]

BLAST of MS002488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	2.7e-23	44.83	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	7.9e-23	43.22	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
Q9FMQ4	1.3e-09	31.25	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]
F2Q9V4	2.9e-09	36.73	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]
F4JLQ5	1.1e-08	32.14	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]

BLAST of MS002488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ65	7.0e-83	99.31	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1	[more]
A0A6J1D5G6	1.4e-43	60.81	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111017469 PE=3 SV=1	[more]
A0A6J1DPJ1	7.1e-43	60.56	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022329 PE=3 SV=1	[more]
A0A6J1CPC6	3.0e-41	54.48	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1	[more]
A0A6J1H9E9	1.9e-40	56.74	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111460817 PE=3 SV=1	[more]

BLAST of MS002488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	1.9e-24	44.83	S-protein homologue 1	[more]
AT4G29035.1	5.6e-24	43.22	Plant self-incompatibility protein S1 family	[more]
AT1G28305.1	8.4e-12	32.48	Plant self-incompatibility protein S1 family	[more]
AT5G04347.1	3.2e-11	31.19	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	9.3e-11	31.25	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 36..144 e-value: 3.4E-26 score: 91.8
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 28..130
None	No IPR available	PANTHER	PTHR31232:SF34	PUTATIVE-RELATED	coord: 28..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002488.1	MS002488.1	mRNA