MS002468 (gene) Bitter gourd (TR) v1

Overview
NameMS002468
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionthioredoxin-like protein 4B
Locationscaffold318: 325813 .. 331072 (+)
RNA-Seq ExpressionMS002468
SyntenyMS002468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTACCTTCTAAGGACCTTAACGAAGAAGAGAGAAGTTGATTCCATCATTAGGGACACCATTGATAAAGTCCTCATTCTCCGATTTGGTCGGTGTTCCGATTCAGTTTGTCTCCTCCTTGATGATATTGTATGTTGCCAAATCCCTAAATTTTGTGTTCTTCTTCTAGGGTCGATATGATTTTTCTATGTTGATGATTTTGTTTGCTGGTTTTTCAATTTAGCTTGCTAAGTGCGCGCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTGGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATTTCTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGTGAGTTTTATCCTGCTGTGCTGGTCTTTGTTAATTTCCTGCTTGACTTCTGTTCAAATATGTCTATTATGGATATGTAGCACTGCATGATTTCTGTTCAAATAGATGCTGGTTGACTTGTTTTGAGATAACACAAGATCCCTTTGGAGTCTAAACAAGTGCTGTTGTTGGAATGAGAAGTAAAAAGTATTTATTTTTAGTTTACTGGAAAGAAAAAGAAATCAACAATTGTTAACCGTAGTATTTGTTTCTTATTGGGTAAAAAGAGAACTTCTTAGAGTCTTGTAAAGCATGCTGAAAGGTTGTTGTTTTCTTAAGTTTGATAGTTGCCATAGCAATGCTTCACCTTTATGGTCAAGACAATTCAGAGTAAATCTAAAAGCTATAATGTGGAAAAGTAAAAAGATAGAATGTTCTTTTGAGTTGTTTATGTTTTTGGTTTTCCTCTTTTTGTTGTTGGTAGTATTCCTGTATAGTTTTTAGATCTTAGTTATCATTTGTTTTTGAACAAGATGCGAACTTCTCATTGATTAATAAAATGGAACAAAAATGTTCAAAGGATACAAACTCCCAAAGGGAGTTAGAAAAACAAAAAAGGAAAAAAAATGGAGAGAAAGAACCTGAAAAAGAGGGAAACAACCCAAATGAGCAAAAGAGAATAACAACAGTAAGACCATAAACGCAACTATCAGAAAGAGCCTCCAACATGCAAGGAATACTCTATCTTTCTTCTAGAGTGCTCTTCTAAACAAATAACCTGCTCTTTGCAAATTTTTTTTTTTTGGAAAAGAAACAGATTTCATTAATGTAATGAAATGGTAAAAGAAACAAAAGGGGAAGATCCCAAACCAAGGGAGTTACAAAAAAGCTCTCCAATTGGTTAAAAGAGAAACAAAGCTATAGTGTTTAAAGATAGGAGAACATTTACACCAAGATACAACCATAGACACTATAGCTTCAAAAATGATGCCAACGGACAGCTCCTTTCCTAAGAAGATCCGGCGATTCCTTTCTAACCATGTCGACCAGAGCAGCGCCCTAACAAAATGCTTCCATAGGATTCCTGCTTCACTGGTGAAAGGGTGCTCCAAAAGAGTGGATGCTAGGAGAGAACAAAGATCCGTGTGTAGGACTATAGGCCAACCGAAGGATGAGAGAATAGAGGCCCATAGCTTTGCTGTGTATTCACAGGAAACAAAAATGTGGCCCATGGATTCTTCTTGTTTTTTACAAAGCACACACCATTGGGGTGAAAGACACATATGCTGCAACTTCTTTTGAAGCTTGTCATGGGTATTAAGGGCATTCCTGTTGACCTCCCATAAAAAGACTTTGATCTTTTTTGGGTAATGATCCTTCCAAATCGATTTGTAGAGCATAGTCTCCTCATGAGTAGTTTGTGAGATTTGTAGATCTTGTAGAAGTGAGTTGACGGAGAAAAGGCCAGATGGTTCCAATTTCCAGACAAATCTATCACATCCCCGATTGATGTGGATGGGAGACAGCAGGAGATGGAGCTCTAGGTATTCCTGGATTTCTGCGTCTTTGAGATTCCGTCTAAAACAGAGGTCCCATGATTTTGTAGTTATCGACCACATCTCCTTCACCAAGGCATCTTTGCAAGAGTGTAAAGCATATAGGAGGGGGAAGACAGTACACAGAGGACCGGGGGCCAGCCATCCATCTTTCCAAAATAAGACTTTAGATCCATCGCCTATCTTGAAGCAGCTTCTGACCAGAACATGTTGCTTCTGTTTTAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGGATGAATAGGAAAGGGGAGAGGGGATCACCCTGTCTAAGGCCCCGGGAGGCCTTAATTTTACCTCTAGGCTTTCCATTAATGATGATAGAGAAGTTGGTGGATGAAATGCAGCCTCTAATCCACTTTCGCCATCGGGATCCGAAGCCTTTTGCTGCAAGGATACCATCCAAAAAGTCCCAATCAACCTTATCAAAGGCCTTTTCAATGTCTAACTTTATCACCACTCCTTTTTCCTTTTTCCGCAAGTATTCGTCGATGAGCTCGTTTGCTATTAGGGAGGCATCAAGGATTTGTCTACCGGCCACAAAAGCTGATTGTTGGGGAGAAATGGTAGATGGCAGAACCTTCTTAAGTCTCTCAGAAAGGACTCTAGCTATGATCTTATACATACAAGAGATCAAGCTTATAGGTCGGAAGTCACTAACCGATCGTGCATCAACTTTCTTTGGAATTAAACAGATGTAGGTCTCGTTGAGGCTAGCATTTACAATGCCCTTTCGAAAAAAATCTTGGAACACTGAATTTTACAATGCTCTTTGCAAATTTTGACAAGCTCGGAATTAAGAGAGGGCCTAAATAAGCATCCAATTGAGAGGTGGATTAGCTAGAATATTTTGACAAGCTCGGATTTTAGTTTTCATTTGCAGAATTTTTTTTTTATGAAACAAAAATTAGAAACTAGAGCAACTAGGGTTGGCTTAGAAGCCAAAGCAGCAAGTCATACGTTCAGATGTCTAGGAAATTAGAAGTTCATTTTATGGTTAACCATTTTTCTAGAATACAAAATATCATACTAGGGATATCTTATTATGCCTCATATGTATTCTTCTCTGTTGATGATGAATGGTATGTCTATCGAAGCCGCTGAAAGTTGTAGGACAAAATGTTTAAATAAGGAGAGAAATGAGAGAAATACAGTGGGGAGAGAGGGACTAGTTATTGGTTAGGGGACGTATCCAAGTGCTTATAAGCCCATCTAACCTGAAACCCAATGTGAATTTCTATCCAAAATTCATTTAGAGTTGACATCCTCTGTGATTGGGCAGGAAGATGTTTTGTTGATCACGCTTCGCTAGTTAGTACTTAGTAGTGGAGTGAACAAATAAATACAAAAGACTGAACAAATCGATCAGAACCGATTTAACTGACTAAACTGACATCAATCAGTTGGTGATGAAAAACCAACACATCGGTTGGTTGGGGTGGCCAAAAAGTGCCATTTCGATCGGTTGACTGAACCACGTGGTTGTCCATGTGTGGACAACGTGAATCTTCTCTCTCACAGTCTCTATTTTCTTCCTTTCTCCCTCTCTCACTATACATGAAAATGTCCTCTCTCTCACCAACTCTTTTTTCTCTATCCCTCCCTCTTTCTTTTTTGATTCTGACTCTCTCCCGTTCTCTGTTTTCCTCTCATTTTTTTCCCTTTCTCATTTTTTCTTCCATCTTTCTCTCTCATTTTCCCCACCTCTCCGTCTCTCCCCTCCTCTTCCTCTCAGTTCTCTGCTGCATCTCAGTCCTTTCAGCCATGTAGCATGCCCTAACTTCTACTTCGGCATCTCTCGAAAACTGACTAAAATTGACTAAACTAGTGATGGTCGGTACAAAGCCTAAAAATTGCTAGCTTTTCAATAAAAAACTAACTGGTCACTTTTCGATGTTGGTCTTGTCATTGTGCCAAAAATGACACCAACCAACTAACATGGCGCCCCTACTTAGTAGCCATTCCCATGTGTAAAAGACAATACTTATGTGGTGCTTGCTCTGATAAATATTGCAGCTAACAAGCTGTTCCTCACATAATATTTTAAATAAGTCTATTAAATTGTATTATCACTATGTCTGAGATTAAATTACACTAAAAGGTATTTTCATTCTTATTTTTTTTTTAAATGTAGGACTGCAGACCATACAAAGTGGATTGGTGCTTTTCACCAAAAGCAGGATTTCATTGATGTTGTGGAGGTAAGTGGCCACTGGTTTTATTTGAATAAATGAAAAGCCGTGAATGAAATATATATATTATATATATATATATTTGTGATAACAAAGTACAAACTAGAGACTATTGGTCAAGACTGTCATTACAAAAATCAAATCAAAGAAATTCGTTCCTTGAGGAAAAAAAATTATTAGACGGAGAGCACCAAGTAGAAGTGAAAATTATTCACTAAATCCCGAAAAACCATCAAGGTTTGCCCCCGATTGGGCTCGAACATTCAGATGGATTGTTGCTTTTTTATTTGAGAAACTTGTTTTGGCTTATGACTTGATGATTACTTCTAGCAGGGTCTCAACTTATTTCTTTATCTGTATTTTGTAATTTCGTTCTAGTAGTACTGGTACAGGTTTTTAGTTCTTCTTGGATTTACATGTCCACATTCTTCTTTCTTCTTTATGACAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTGATTGTGAATTGCCCATTGCCTCCAGAGCGAATTCCAAAATACCAATTATTGTACAAGGATCTG

mRNA sequence

ATGAGCTACCTTCTAAGGACCTTAACGAAGAAGAGAGAAGTTGATTCCATCATTAGGGACACCATTGATAAAGTCCTCATTCTCCGATTTGGTCGGTGTTCCGATTCAGTTTGTCTCCTCCTTGATGATATTCTTGCTAAGTGCGCGCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTGGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATTTCTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGACCATACAAAGTGGATTGGTGCTTTTCACCAAAAGCAGGATTTCATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTGATTGTGAATTGCCCATTGCCTCCAGAGCGAATTCCAAAATACCAATTATTGTACAAGGATCTG

Coding sequence (CDS)

ATGAGCTACCTTCTAAGGACCTTAACGAAGAAGAGAGAAGTTGATTCCATCATTAGGGACACCATTGATAAAGTCCTCATTCTCCGATTTGGTCGGTGTTCCGATTCAGTTTGTCTCCTCCTTGATGATATTCTTGCTAAGTGCGCGCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTGGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATTTCTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGACCATACAAAGTGGATTGGTGCTTTTCACCAAAAGCAGGATTTCATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTGATTGTGAATTGCCCATTGCCTCCAGAGCGAATTCCAAAATACCAATTATTGTACAAGGATCTG

Protein sequence

MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
Homology
[Close]
BLAST of MS002468 vs. NCBI nr
Match: XP_022152114.1 (thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-like protein 4B [Momordica charantia])

HSP 1 Score: 302.4 bits (773), Expect = 2.2e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 151

[Close]
BLAST of MS002468 vs. NCBI nr
Match: KAG6575968.1 (Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014491.1 Thioredoxin-like protein 4B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. NCBI nr
Match: XP_022991475.1 (thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like protein 4B [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEE+QVYIKYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEA
Sbjct: 61  VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. NCBI nr
Match: XP_022953679.1 (thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-like protein 4B [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIV+CPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVSCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. NCBI nr
Match: XP_004139666.1 (thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745245.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745246.1 thioredoxin-like protein 4B [Cucumis sativus] >KGN44925.2 hypothetical protein Csa_015728 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 7.9e-76
Identity = 143/151 (94.70%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+AL
Sbjct: 1   MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTADHTKW+GAFHQKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQL YKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLFYKDV 151

[Close]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match: Q9NX01 (Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.7e-47
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VD+D  +  VY +YFDIS IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E 
Sbjct: 61  VDVD--QTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           I+RGAM+GKLIV  P+ P+ IPKY LLY+D+
Sbjct: 121 IYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149

[Close]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match: Q8BUH1 (Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 91/151 (60.26%), Postives = 117/151 (77.48%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VD+D     VY +YFDIS IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E 
Sbjct: 61  VDVD--HTPVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Sbjct: 121 IYRGAMRGKLIVQSPIDPKNVPKYDLLYQDI 149

[Close]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E 
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 120

Query: 121 IFRGAMKGKLIVNCP 136
           ++RGA KG+ +V  P
Sbjct: 121 VYRGARKGRGLVVSP 133

[Close]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E 
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 120

Query: 121 IFRGAMKGKLIVNCP 136
           ++RGA KG+ +V  P
Sbjct: 121 VYRGARKGRGLVVSP 133

[Close]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVV 120
           VDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120

Query: 121 EAIFRGAMKGKLIVNCP 136
           E ++RGA KG+ +V  P
Sbjct: 121 ETVYRGARKGRGLVIAP 133

[Close]
BLAST of MS002468 vs. ExPASy TrEMBL
Match: A0A6J1DGN8 (thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 151

[Close]
BLAST of MS002468 vs. ExPASy TrEMBL
Match: A0A6J1JT18 (thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEE+QVYIKYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEA
Sbjct: 61  VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. ExPASy TrEMBL
Match: A0A6J1GQC5 (thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIV+CPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVSCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. ExPASy TrEMBL
Match: A0A1S3BH38 (thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 141/151 (93.38%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSEE+QVY+KYFDI+LIPSTVFFFNAHHMKMDSGTADHTKW+GAFHQKQ+FIDVVEA
Sbjct: 61  VDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQNFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPE+IPKYQLL+KD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPEQIPKYQLLFKDV 151

[Close]
BLAST of MS002468 vs. ExPASy TrEMBL
Match: A0A6P4ATD0 (thioredoxin-like protein 4B OS=Ziziphus jujuba OX=326968 GN=LOC107426724 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 135/151 (89.40%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL TLTKKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IAL
Sbjct: 1   MSYLLNTLTKKREVDSIIKDTIDKVLVLRFGRASDSVCLLLDDVLSKSAREVSKFATIAL 60

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VDIDSE++QVY+ YFDI+LIPST+FFFNAHHMKMDSGTADHTKW+GAFHQKQDFIDVVEA
Sbjct: 61  VDIDSEDVQVYVNYFDITLIPSTIFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           IFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of MS002468 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-68
Identity = 117/151 (77.48%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +AL
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120
           VD+DSE++QVY+KYFDI+L PST+FFFNAHHMK+DSGTADHTKW+GAFH KQDFIDVVEA
Sbjct: 69  VDVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEA 128

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 152
           I+RGAMKGK+IV CP+PPERIPKYQL+YKD+
Sbjct: 129 IYRGAMKGKMIVQCPIPPERIPKYQLVYKDV 159

[Close]
BLAST of MS002468 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVV 120
           VDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120

Query: 121 EAIFRGAMKGKLIVNCP 136
           E ++RGA KG+ +V  P
Sbjct: 121 ETVYRGARKGRGLVIAP 133

The following BLAST results are available for this feature:
BLAST of MS002468 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152114.12.2e-78100.00thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-li... [more]
KAG6575968.11.2e-7697.35Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KA... [more]
XP_022991475.12.1e-7696.69thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like ... [more]
XP_022953679.14.7e-7696.69thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-lik... [more]
XP_004139666.17.9e-7694.70thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like p... [more]
BLAST of MS002468 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9NX014.7e-4760.93Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1[more]
Q8BUH11.1e-4660.26Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2[more]
P838761.5e-1635.56Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
P838771.5e-1635.56Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
Q9FE621.9e-1637.96Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1[more]
BLAST of MS002468 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DGN81.1e-78100.00thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 ... [more]
A0A6J1JT181.0e-7696.69thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=... [more]
A0A6J1GQC52.3e-7696.69thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 S... [more]
A0A1S3BH387.3e-7593.38thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1[more]
A0A6P4ATD01.5e-7289.40thioredoxin-like protein 4B OS=Ziziphus jujuba OX=326968 GN=LOC107426724 PE=3 SV... [more]
BLAST of MS002468 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24730.13.8e-6877.48mRNA splicing factor, thioredoxin-like U5 snRNP [more]
AT5G08290.11.4e-1737.96mRNA splicing factor, thioredoxin-like U5 snRNP [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..138
e-value: 3.8E-76
score: 268.9
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..137
e-value: 2.8E-48
score: 163.0
IPR004123Dim1 familyPIRSFPIRSF017199Dim1coord: 1..144
e-value: 3.8E-49
score: 163.8
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..150
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..140
e-value: 9.0E-48
score: 163.4
NoneNo IPR availablePANTHERPTHR12052:SF4THIOREDOXIN-LIKE PROTEIN 4Bcoord: 1..150
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 7..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002468.1MS002468.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex