MS002464 (gene) Bitter gourd (TR) v1

Overview
NameMS002464
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Locationscaffold318: 312088 .. 314657 (-)
RNA-Seq ExpressionMS002464
SyntenyMS002464
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGAGTGGGATTCGAGCTTCAGTTTCCTCGTCCCCTTTTTCACTTTTGCACACTAAACCCAAATTTACCCACCATTCATCTCCAAATCTTGCTGTGTCCCGCTCCCCTTCCACTCCCTCAAATCTCAAGCTTCGAGGAATTCCACATTTTCCACCAAATTCCTCTCCCAGATCCACAGCTCGTTGTTGCAGCAGCTCCGGCCCCGGTGGTTTCGGCTCCGGTACCTTAATCTTCGCCTCCTCTCTTTTTTGTTTTCGAATCTCTTGTTGTTGGTGAATAAATTACGTAGCTATTTCGTTTGTTTTTCTTGTTGGTTTGTTCTCCATTTGAAGAAGAAGAAGAAGAACACGACGATGATGACTTTCCCTTTTCCTTGTTTTTTTTTCTCTCTCTTCTTGATTCTGAGATTTTAGTGAATCTCTGCGTTTGTTTTGACTCTTAGTTGAGTGAATTTACTTCTCACATGGAACTATCTGATTGCGTGACTACCTACTGTTTAAGTTCACCTAATTGAGTGAGATTTGGTAAAGATTAGTATTTCAATTTTGTTTTCCTCATACCACCAGCTGAAGCTTCTGTTTGCTTTCTTTAGCTGAATGCGGTTGTCTTATTAAGAGCTTATTAATTTTCTAGAGTGAGAATTCGTTTTCCTTTCACTCTTTTGAAATTTGACTTTGGACCCAATTATGAAACCTGTGACGTTGTGAAGAATGTCCTCTGCTTCAAATAATGTGGAGGAGGAAATATGGAAAATATGGCACTCTTTGCTTTTGGAGAAAATCTGGAAGTTCTATTAGCATTTGAGACGGATTGAGGATCGAGGGGGAGTTGGTAGAAAGATCTAAGAGATCTTAAATTCTCTTGAGACTTCTTTTATTTAAGCTGTTAATTATCGCATTGTTTTCTGATTTCGTGAACAACTTGCTCAATAACAATGAAAATTAGTTCCAAAATGATAATCGTGAATTAAATATCCAACTTTGTTTTTTAATCCACATCAAGGAAATCGATTCTGTTGACGGGGTTCTAGGACTATGAGAAAATCCACTACAATTGATGTTCAATAGAACACCCACGTGCCCTTTCACAGAATTATCCCTTCTCTATATTTGTCTTATGCACATTTCTGATATGTGAAAGGAGGAATAGTACACAACTTCAAGAAGATAATATTTATCTTATTAAAAGAAATTCAGTACAAACTATGTGATAAGATTGTTTTCTGGTTCCGTGATCATCTAGTTTTGTTGCTGTTGTCAAGCATTTAATGAGCTAGCTGTATGACACAGGTGATGGCGACAGTAGGACTGTTCTAGATGCCTTTTTCTTAGGGAAAGCTCTAGCAGAAGCCTTGACTGAGCGTATCGAGTCAACAGTTGGAGAGGTTCTGAGTGGGATCGGGAGGCTGCAAGCTGAACGACAAAAACAAATTGTTGATTTCCAGGTAGGATGCTCCAAAATTAATGATATATTTGAATGACTGATATGTGCTTCTGATTATCATTTTCTTCCCATTTGTGTGTTTTATTGTAGTTCAATCTTGCAGAGGATTTCTTGTAGCTTTCTTTTCTATTTTCACTTTATCTAATTGAAGAATGAAGGATAGTGAACTCAGGTTCTTCCCCTTCCAACTTTTGAAGGTTTCTATCTTCTTTTCCTGTTAACAAATGTTTCCCCTACTACAGTGCATCAAGGAAGAACTTACAGACATAAATTTTCTTGCAACTTCCTAATCTTCTTTATAACAACTGCATTGTGGTTTCTTCCACTGTGAACTGTACAAAAACATCCATGGCTGATGTTTCGAAAATGTTTAATTTTCTGGAGGTTAGCTTTGTAAGTAAACTACTAATGAGTTTGGTATCTGATGACAACTATGGCTTAGAACTTTTTGAATGTACCTGTTGGACTGAAGTCTTTGACATGAACTAACTGAAACCATGATGCATGGCCTATGATGGTGGTTACTGTGACTGAGATGAACATCTCAAAATTAATCATATTAGGGGAAATTTCAATTTTACTCCTTCGAGGTGTCAATCTTAACTTTAAACTTTCAATTTTATCCCACTGAACCCTAAATTTGAAAATAATGAAAATTATAACTCAAAGTTGAGTTTTCATATATATATTCTTTTAAGACTTGTGGATAGCTATGAGCATCGTTATGGTTGGATGAGATTACTTTTATGGGTATGGGCTGTTTTTACTCCTTCATGGTTAGATTGGATTACATGAGGTGAAAAAAACTCAATAGTGATAGGTAAAGTTTAAAAACTATAGTACTCAATATTCCTTTAAATTTCCTTCTTTTCTGTCTATGCTGAAAATGGCATATTCATACCTAAATGACCTTTATACAGGAGGAGGTGATAGAAAGAGCTAAGAGAGCCAAGGACAAAGCTGCACGTGATTCCATAGAAGTACAAGAACCCATCTCCCCCTCAATAACATCACCTACGATCGCAGTTACTTCGACCGATCAACAACAACTCTCGAAACCCGACCCATATTCAGAATCTACTGTGAACCTTGATCCTCCTCTCGATGTAACGAATGACGAAGAG

mRNA sequence

AAAATGAGTGGGATTCGAGCTTCAGTTTCCTCGTCCCCTTTTTCACTTTTGCACACTAAACCCAAATTTACCCACCATTCATCTCCAAATCTTGCTGTGTCCCGCTCCCCTTCCACTCCCTCAAATCTCAAGCTTCGAGGAATTCCACATTTTCCACCAAATTCCTCTCCCAGATCCACAGCTCGTTGTTGCAGCAGCTCCGGCCCCGGTGATGGCGACAGTAGGACTGTTCTAGATGCCTTTTTCTTAGGGAAAGCTCTAGCAGAAGCCTTGACTGAGCGTATCGAGTCAACAGTTGGAGAGGTTCTGAGTGGGATCGGGAGGCTGCAAGCTGAACGACAAAAACAAATTGTTGATTTCCAGGAGGAGGTGATAGAAAGAGCTAAGAGAGCCAAGGACAAAGCTGCACGTGATTCCATAGAAGTACAAGAACCCATCTCCCCCTCAATAACATCACCTACGATCGCAGTTACTTCGACCGATCAACAACAACTCTCGAAACCCGACCCATATTCAGAATCTACTGTGAACCTTGATCCTCCTCTCGATGTAACGAATGACGAAGAG

Coding sequence (CDS)

AAAATGAGTGGGATTCGAGCTTCAGTTTCCTCGTCCCCTTTTTCACTTTTGCACACTAAACCCAAATTTACCCACCATTCATCTCCAAATCTTGCTGTGTCCCGCTCCCCTTCCACTCCCTCAAATCTCAAGCTTCGAGGAATTCCACATTTTCCACCAAATTCCTCTCCCAGATCCACAGCTCGTTGTTGCAGCAGCTCCGGCCCCGGTGATGGCGACAGTAGGACTGTTCTAGATGCCTTTTTCTTAGGGAAAGCTCTAGCAGAAGCCTTGACTGAGCGTATCGAGTCAACAGTTGGAGAGGTTCTGAGTGGGATCGGGAGGCTGCAAGCTGAACGACAAAAACAAATTGTTGATTTCCAGGAGGAGGTGATAGAAAGAGCTAAGAGAGCCAAGGACAAAGCTGCACGTGATTCCATAGAAGTACAAGAACCCATCTCCCCCTCAATAACATCACCTACGATCGCAGTTACTTCGACCGATCAACAACAACTCTCGAAACCCGACCCATATTCAGAATCTACTGTGAACCTTGATCCTCCTCTCGATGTAACGAATGACGAAGAG

Protein sequence

KMSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE
Homology
[Close]
BLAST of MS002464 vs. NCBI nr
Match: XP_022154385.1 (uncharacterized protein At4g13200, chloroplastic [Momordica charantia])

HSP 1 Score: 344.0 bits (881), Expect = 8.4e-91
Identity = 186/193 (96.37%), Postives = 186/193 (96.37%), Query Frame = 0 

Query: 2   MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA 61
           MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRS A
Sbjct: 1   MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSKA 60

Query: 62  RCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ 121
           RCCSSSGP     GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ
Sbjct: 61  RCCSSSGPGGFGSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ 120

Query: 122 IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTV 181
           IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTD QQLSKPDPYSESTV
Sbjct: 121 IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDPQQLSKPDPYSESTV 180

Query: 182 NLDPPLDVTNDEE 190
           NLDPPLDVTNDEE
Sbjct: 181 NLDPPLDVTNDEE 193

[Close]
BLAST of MS002464 vs. NCBI nr
Match: XP_038900031.1 (uncharacterized protein At4g13200, chloroplastic [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 8.5e-59
Identity = 137/185 (74.05%), Postives = 150/185 (81.08%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+ +SVS SPFSL+ TKPK TH+SS +L + RS STPSNLK R I HF PN SPR  AR
Sbjct: 3   SGVTSSVSQSPFSLVPTKPKITHYSSQSLLLFRSSSTPSNLKFRRISHFQPNGSPRFIAR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAE+QKQI DFQE
Sbjct: 63  CSS----GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAEQQKQITDFQE 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVN 182
           EVIERAK+AKDKAARD+ EVQ P+S SITSPTI VT     ST++QQLS PD  SE+ VN
Sbjct: 123 EVIERAKKAKDKAARDAKEVQGPVSSSITSPTIEVTSSPTPSTNRQQLSNPDQDSETVVN 182

[Close]
BLAST of MS002464 vs. NCBI nr
Match: XP_004139667.1 (uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 hypothetical protein Csa_015636 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 9.1e-53
Identity = 126/180 (70.00%), Postives = 140/180 (77.78%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+ +SVS SPFSL+ TKPK TH+S P+L + RS STPSNLK RGI HF PN   R  AR
Sbjct: 3   SGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFLAR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRTVLDAFFLGKALAEALTERIEST+GEVLSGIGRLQAE+QKQI DFQ+
Sbjct: 63  CSS----GDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQD 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL 182
           EVIERAK+AK+KAARDS EVQ P+S S+ SP I V S+     S PD  SES VN DP L
Sbjct: 123 EVIERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTS--SSPDADSESVVNQDPSL 176

[Close]
BLAST of MS002464 vs. NCBI nr
Match: XP_008447268.1 (PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-52
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN S R  AR
Sbjct: 3   SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLAR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRT+LDAFFLGKALAEALTERIEST+GEVLSGIG+LQAE+QKQI DFQ+
Sbjct: 63  CSS----GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL 182
           EVIERAK+AK+KAAR++ EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Sbjct: 123 EVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL 176

[Close]
BLAST of MS002464 vs. NCBI nr
Match: XP_023514675.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-43
Identity = 119/187 (63.64%), Postives = 134/187 (71.66%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+  SVS S FS+LH+KPK TH SS           PSNLK R I    P  SPR   R
Sbjct: 3   SGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPI---SPIGSPRFVVR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRTVL+AFFLGKALAEALTER+EST+GEVLSGIGRLQAE+QKQI+DFQE
Sbjct: 63  CSS----GDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQE 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSEST 182
           EVIERAK+A++KAARD+ EVQ PI  S SI SPTI V     +ST+QQQLS P   S + 
Sbjct: 123 EVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTA 171

[Close]
BLAST of MS002464 vs. ExPASy Swiss-Prot
Match: Q8LDV3 (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g13200 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-19
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 0 

Query: 10  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSS 69
           S S FSL ++  + + HS   L  SRS      L+L         S  RST+    CS+ 
Sbjct: 8   SPSSFSLSNSYNQTSPHSF-TLRNSRSNFEFHRLRL------DVESRRRSTSLRSNCSTK 67

Query: 70  G--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQEEVI 129
           G   G+ ++++VLDAFFLGKALAE + ERIESTVGEVLS IG+ QAE+QKQ+ + QEEV+
Sbjct: 68  GTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVL 127

Query: 130 ERAKRAKDKAARDSIEVQEPISPSITSPTIAVT 159
           ERAK+AK++AAR+++E Q      + S  +A+T
Sbjct: 128 ERAKKAKERAARETMEEQ----GLVASKPVAIT 149

[Close]
BLAST of MS002464 vs. ExPASy TrEMBL
Match: A0A6J1DJG4 (uncharacterized protein At4g13200, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021665 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.1e-91
Identity = 186/193 (96.37%), Postives = 186/193 (96.37%), Query Frame = 0 

Query: 2   MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA 61
           MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRS A
Sbjct: 1   MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSKA 60

Query: 62  RCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ 121
           RCCSSSGP     GDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ
Sbjct: 61  RCCSSSGPGGFGSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQ 120

Query: 122 IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTV 181
           IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTD QQLSKPDPYSESTV
Sbjct: 121 IVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDPQQLSKPDPYSESTV 180

Query: 182 NLDPPLDVTNDEE 190
           NLDPPLDVTNDEE
Sbjct: 181 NLDPPLDVTNDEE 193

[Close]
BLAST of MS002464 vs. ExPASy TrEMBL
Match: A0A0A0K6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-53
Identity = 126/180 (70.00%), Postives = 140/180 (77.78%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+ +SVS SPFSL+ TKPK TH+S P+L + RS STPSNLK RGI HF PN   R  AR
Sbjct: 3   SGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFLAR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRTVLDAFFLGKALAEALTERIEST+GEVLSGIGRLQAE+QKQI DFQ+
Sbjct: 63  CSS----GDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQD 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL 182
           EVIERAK+AK+KAARDS EVQ P+S S+ SP I V S+     S PD  SES VN DP L
Sbjct: 123 EVIERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTS--SSPDADSESVVNQDPSL 176

[Close]
BLAST of MS002464 vs. ExPASy TrEMBL
Match: A0A1S3BHX5 (uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.7e-53
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN S R  AR
Sbjct: 3   SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLAR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGDSRT+LDAFFLGKALAEALTERIEST+GEVLSGIG+LQAE+QKQI DFQ+
Sbjct: 63  CSS----GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL 182
           EVIERAK+AK+KAAR++ EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Sbjct: 123 EVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL 176

[Close]
BLAST of MS002464 vs. ExPASy TrEMBL
Match: A0A6J1GNZ1 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456135 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 5.4e-43
Identity = 118/192 (61.46%), Postives = 136/192 (70.83%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+ +SVSSS FS++ TK K TH SSP+L   RS ST SNLK R      PN S R  A 
Sbjct: 3   SGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PNGSLRFIAS 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GDGD+RTVLDAFF+GKA AE LTER+ESTVGEVL  IGRLQAERQ+QI+DFQE
Sbjct: 63  CSS----GDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQE 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVN 182
           EVI+RAK+AK+KA RD+ E Q PIS SI S TI VT     S++ QQ S P+ YSE+ VN
Sbjct: 123 EVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVN 181

Query: 183 LDPPLDVTNDEE 190
            DPP     DEE
Sbjct: 183 QDPP---RGDEE 181

[Close]
BLAST of MS002464 vs. ExPASy TrEMBL
Match: A0A6J1KY61 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498180 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 122/194 (62.89%), Postives = 136/194 (70.10%), Query Frame = 0 

Query: 3   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTAR 62
           SG+  SVS S FS+LH+KPK TH SS           PSNLK R I    P  SPR   R
Sbjct: 3   SGVTPSVSPSHFSILHSKPKITHLSS-----------PSNLKFRPI---SPIGSPRFVVR 62

Query: 63  CCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQE 122
           C S    GD DSRTVL+AFFLGKALAEALTER+EST+GEVLSGIGRLQAE+QKQI+DFQE
Sbjct: 63  CSS----GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQE 122

Query: 123 EVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSEST 182
           EVIERAK+A++KAARD+ EVQ PI  S SI SPTI V     TST+QQQLS P   S + 
Sbjct: 123 EVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTA 175

Query: 183 VNLDPPLDVTNDEE 190
            N DPPL    DEE
Sbjct: 183 PNQDPPL---GDEE 175

[Close]
BLAST of MS002464 vs. TAIR 10
Match: AT4G13200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-20
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 0 

Query: 10  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSS 69
           S S FSL ++  + + HS   L  SRS      L+L         S  RST+    CS+ 
Sbjct: 8   SPSSFSLSNSYNQTSPHSF-TLRNSRSNFEFHRLRL------DVESRRRSTSLRSNCSTK 67

Query: 70  G--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQIVDFQEEVI 129
           G   G+ ++++VLDAFFLGKALAE + ERIESTVGEVLS IG+ QAE+QKQ+ + QEEV+
Sbjct: 68  GTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVL 127

Query: 130 ERAKRAKDKAARDSIEVQEPISPSITSPTIAVT 159
           ERAK+AK++AAR+++E Q      + S  +A+T
Sbjct: 128 ERAKKAKERAARETMEEQ----GLVASKPVAIT 149

The following BLAST results are available for this feature:
BLAST of MS002464 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154385.18.4e-9196.37uncharacterized protein At4g13200, chloroplastic [Momordica charantia][more]
XP_038900031.18.5e-5974.05uncharacterized protein At4g13200, chloroplastic [Benincasa hispida][more]
XP_004139667.19.1e-5370.00uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 h... [more]
XP_008447268.11.2e-5269.44PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis ... [more]
XP_023514675.18.5e-4363.64uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
BLAST of MS002464 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LDV34.0e-1947.06Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
BLAST of MS002464 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJG44.1e-9196.37uncharacterized protein At4g13200, chloroplastic OS=Momordica charantia OX=3673 ... [more]
A0A0A0K6Q24.4e-5370.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1[more]
A0A1S3BHX55.7e-5369.44uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3... [more]
A0A6J1GNZ15.4e-4361.46uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KY611.6e-4262.89uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
BLAST of MS002464 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13200.12.8e-2047.06unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..72
IPR040003Plastoglobular protein 18-likePANTHERPTHR35745BNACNNG14650D PROTEINcoord: 2..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002464.1MS002464.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization