MS002442 (gene) Bitter gourd (TR) v1

Overview


Name	MS002442
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold318: 84979 .. 86061 (+)
RNA-Seq Expression	MS002442
Synteny	MS002442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCGGTCGGCGACGGCCGAGATTTCGCCGGCGGTTTGACACTCAACGACGTTTTGACCATTCATAAGAGAGGTTCGCCGAGCCCGTCGCCGGCGGTGAGACTGAACGGCCGGACTCTGCTTGATATTATACGAGACGACGTCGGAAAAGGCTCCGCCGGCGACAAAGAGAAGAAGTCTTGGAAATTTCTAAGGGATCGCCTCCGGCTGAGGCGCGGCCTCGAGATTTCCCTCCGCAACTCCAGATCTCAAATTCCGCCGCCGAATTCGCTTCGCTTCGCCGGTATGTCGCCGGACGAAGAATCACCGGAGACCACCGCCCCAGCCGCCGCCGCCGCCTCCGCCCCTCCGCCATTCCGGCCTCAGATATCGCGGCGGAATATCACGCGGCTCAGCCAGAACGCGCCTCCGCCGTCCCACGCCACAAATTCCGACGACGCGCCGGTGAACACCGCAACAGCCGCCGCCGTCCTCCCCAACCCCGGACGGAGCCTGAGGCCGCAAATCTCCCGGCGCAACTCGACGAGACTCGCCGTGGAGCGCAGCGAAAGCTTCACGGACCTGACGGAGCCGGCGCGTGAGGGCACGCGCCGCCTCTCAGCGGCGTTGGCGGAGGAGAGATCGCTGTCGGCAAGAGAAGCGGTGGCGGCCCAAGAAGCAGCAGACGCAGAAGCCATAGCCCACCAACACGAACAAGAACACGAAGAAGAAGAAGAAGAAGAAGACGACGAAGATTCCGCGGCGGGGGCCACGGCGGCGGAGACGGCGGCGCCGGTGAGAATGTCGCTGATGGATCTCTTAGAGGAAACGGACAGGCAAATGGGATTCGAGGGATCAAGATACATAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGATGAGGAGGAGATAGAAGAAGTCGACGGCGGCGGGCCGGAGCGGAACTGCTGCGTGTGCATGGTAAGGCATAAAGGCGCGGCATTTATCCCCTGCGGTCACACTTTTTGTAGGCTCTGTTCAAGAGAGCTTTGGGTGAGCAGAGGGAACTGTCCGCTTTGCAATGGCTTCATCTTGGAGATTCTTGACATCTTC

mRNA sequence

ATGTTAGCGGTCGGCGACGGCCGAGATTTCGCCGGCGGTTTGACACTCAACGACGTTTTGACCATTCATAAGAGAGGTTCGCCGAGCCCGTCGCCGGCGGTGAGACTGAACGGCCGGACTCTGCTTGATATTATACGAGACGACGTCGGAAAAGGCTCCGCCGGCGACAAAGAGAAGAAGTCTTGGAAATTTCTAAGGGATCGCCTCCGGCTGAGGCGCGGCCTCGAGATTTCCCTCCGCAACTCCAGATCTCAAATTCCGCCGCCGAATTCGCTTCGCTTCGCCGGTATGTCGCCGGACGAAGAATCACCGGAGACCACCGCCCCAGCCGCCGCCGCCGCCTCCGCCCCTCCGCCATTCCGGCCTCAGATATCGCGGCGGAATATCACGCGGCTCAGCCAGAACGCGCCTCCGCCGTCCCACGCCACAAATTCCGACGACGCGCCGGTGAACACCGCAACAGCCGCCGCCGTCCTCCCCAACCCCGGACGGAGCCTGAGGCCGCAAATCTCCCGGCGCAACTCGACGAGACTCGCCGTGGAGCGCAGCGAAAGCTTCACGGACCTGACGGAGCCGGCGCGTGAGGGCACGCGCCGCCTCTCAGCGGCGTTGGCGGAGGAGAGATCGCTGTCGGCAAGAGAAGCGGTGGCGGCCCAAGAAGCAGCAGACGCAGAAGCCATAGCCCACCAACACGAACAAGAACACGAAGAAGAAGAAGAAGAAGAAGACGACGAAGATTCCGCGGCGGGGGCCACGGCGGCGGAGACGGCGGCGCCGGTGAGAATGTCGCTGATGGATCTCTTAGAGGAAACGGACAGGCAAATGGGATTCGAGGGATCAAGATACATAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGATGAGGAGGAGATAGAAGAAGTCGACGGCGGCGGGCCGGAGCGGAACTGCTGCGTGTGCATGGTAAGGCATAAAGGCGCGGCATTTATCCCCTGCGGTCACACTTTTTGTAGGCTCTGTTCAAGAGAGCTTTGGGTGAGCAGAGGGAACTGTCCGCTTTGCAATGGCTTCATCTTGGAGATTCTTGACATCTTC

Coding sequence (CDS)

ATGTTAGCGGTCGGCGACGGCCGAGATTTCGCCGGCGGTTTGACACTCAACGACGTTTTGACCATTCATAAGAGAGGTTCGCCGAGCCCGTCGCCGGCGGTGAGACTGAACGGCCGGACTCTGCTTGATATTATACGAGACGACGTCGGAAAAGGCTCCGCCGGCGACAAAGAGAAGAAGTCTTGGAAATTTCTAAGGGATCGCCTCCGGCTGAGGCGCGGCCTCGAGATTTCCCTCCGCAACTCCAGATCTCAAATTCCGCCGCCGAATTCGCTTCGCTTCGCCGGTATGTCGCCGGACGAAGAATCACCGGAGACCACCGCCCCAGCCGCCGCCGCCGCCTCCGCCCCTCCGCCATTCCGGCCTCAGATATCGCGGCGGAATATCACGCGGCTCAGCCAGAACGCGCCTCCGCCGTCCCACGCCACAAATTCCGACGACGCGCCGGTGAACACCGCAACAGCCGCCGCCGTCCTCCCCAACCCCGGACGGAGCCTGAGGCCGCAAATCTCCCGGCGCAACTCGACGAGACTCGCCGTGGAGCGCAGCGAAAGCTTCACGGACCTGACGGAGCCGGCGCGTGAGGGCACGCGCCGCCTCTCAGCGGCGTTGGCGGAGGAGAGATCGCTGTCGGCAAGAGAAGCGGTGGCGGCCCAAGAAGCAGCAGACGCAGAAGCCATAGCCCACCAACACGAACAAGAACACGAAGAAGAAGAAGAAGAAGAAGACGACGAAGATTCCGCGGCGGGGGCCACGGCGGCGGAGACGGCGGCGCCGGTGAGAATGTCGCTGATGGATCTCTTAGAGGAAACGGACAGGCAAATGGGATTCGAGGGATCAAGATACATAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGATGAGGAGGAGATAGAAGAAGTCGACGGCGGCGGGCCGGAGCGGAACTGCTGCGTGTGCATGGTAAGGCATAAAGGCGCGGCATTTATCCCCTGCGGTCACACTTTTTGTAGGCTCTGTTCAAGAGAGCTTTGGGTGAGCAGAGGGAACTGTCCGCTTTGCAATGGCTTCATCTTGGAGATTCTTGACATCTTC

Protein sequence

MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKKSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSPDEESPETTAPAAAAASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEEEEDEEEIEEVDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF

Homology

[Close]

BLAST of MS002442 vs. NCBI nr
Match: XP_008458019.1 (PREDICTED: nucleolin-like [Cucumis melo])

HSP 1 Score: 437.6 bits (1124), Expect = 1.1e-118
Identity = 262/371 (70.62%), Postives = 279/371 (75.20%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKK 60
           MLAV DGR+ A G TLNDVLTI KR SPSPSPAVRL+GRTLLDIIRDDVGK    ++E+K
Sbjct: 14  MLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRDDVGKSPVSNRERK 73

Query: 61  SWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAG------MSPDEESPETTAPAAAAA 120
           SWKFLRDRLRL         N RSQIPPPNSLRF G      M  DE+SPE T    AA 
Sbjct: 74  SWKFLRDRLRL---------NLRSQIPPPNSLRFPGFTSADMMPNDEQSPEPT--TTAAV 133

Query: 121 SAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRN 180
           SA P  R QISRRN TR + + PP S ATNSD +P N + AAA        LRPQ+SR N
Sbjct: 134 SAAPSLR-QISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSRHN 193

Query: 181 STRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQE 240
           STR +VERSESFTDLTEPAREGTRRLSAALAEERS+SAREAVAAQEAADAEAIA   EQE
Sbjct: 194 STRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQE 253

Query: 241 HEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEE 300
            E+E E               T AP+RMSLMDLLEETDRQMGFEGS Y IE+EEEEEEEE
Sbjct: 254 EEQEAE--------------STPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEE 313

Query: 301 EEDEEEIEEV----DGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360
           EE E E+  V     GGG ERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC
Sbjct: 314 EEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 358

Query: 361 NGFILEILDIF 362
           NGFILEILDIF
Sbjct: 374 NGFILEILDIF 358

[Close]

BLAST of MS002442 vs. NCBI nr
Match: KAA0026218.1 (nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis melo var. makuwa])

HSP 1 Score: 437.2 bits (1123), Expect = 1.4e-118
Identity = 262/371 (70.62%), Postives = 279/371 (75.20%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKK 60
           MLAV DGR+ A G TLNDVLTI KR SPSPSPAVRL+GRTLLDIIRDDVGK    ++E+K
Sbjct: 14  MLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRDDVGKSPVSNRERK 73

Query: 61  SWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAG------MSPDEESPETTAPAAAAA 120
           SWKFLRDRLRL         N RSQIPPPNSLRF G      M  DE+SPE T    AA 
Sbjct: 74  SWKFLRDRLRL---------NLRSQIPPPNSLRFPGFTSAEMMPNDEQSPEPT--TTAAV 133

Query: 121 SAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRN 180
           SA P  R QISRRN TR + + PP S ATNSD +P N + AAA        LRPQ+SR N
Sbjct: 134 SAAPSLR-QISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSRHN 193

Query: 181 STRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQE 240
           STR +VERSESFTDLTEPAREGTRRLSAALAEERS+SAREAVAAQEAADAEAIA   EQE
Sbjct: 194 STRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQE 253

Query: 241 HEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEE 300
            E+E E               T AP+RMSLMDLLEETDRQMGFEGS Y IE+EEEEEEEE
Sbjct: 254 EEQEAE--------------STPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEE 313

Query: 301 EEDEEEIEEV----DGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360
           EE E E+  V     GGG ERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC
Sbjct: 314 EEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 358

Query: 361 NGFILEILDIF 362
           NGFILEILDIF
Sbjct: 374 NGFILEILDIF 358

[Close]

BLAST of MS002442 vs. NCBI nr
Match: XP_023522866.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.6 bits (1111), Expect = 3.4e-117
Identity = 257/374 (68.72%), Postives = 283/374 (75.67%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSA-GDKEK 60
           MLAVG+GR+  GGLTLNDVLT+HKR SP+PSP VRLNGRTLLDI+RDDVGK  A G++E+
Sbjct: 14  MLAVGEGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRDDVGKSPAVGNRER 73

Query: 61  KSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSP------DEESPETTAPAAAA 120
           KSWKFLRDRLRL         N RSQIPPPNSLRFA  S       +EESPE+T P  AA
Sbjct: 74  KSWKFLRDRLRL---------NLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTPVVAA 133

Query: 121 ASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRS----LRPQ 180
           A    P   QISRR+ TRLSQN P    ATNS ++P N  +A+ +     RS    LRPQ
Sbjct: 134 A---VPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSSRSLLRPQ 193

Query: 181 ISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAH 240
           +SRRNSTR ++ERSESFTDLTEP  EGTRRLSAALA ERS+SARE VA QEAADAE  A 
Sbjct: 194 MSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA- 253

Query: 241 QHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEE 300
                        D++D  A +TA ETAAPVRMSLMDLLEETDRQMGFEGSRY IE+E E
Sbjct: 254 -------------DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 313

Query: 301 EEEEEEEDEEEIEEVD--GGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNC 360
           EEEEEEE+EE+ EEV   GGG ER CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGNC
Sbjct: 314 EEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNC 361

Query: 361 PLCNGFILEILDIF 362
           PLCNGFILEILDIF
Sbjct: 374 PLCNGFILEILDIF 361

[Close]

BLAST of MS002442 vs. NCBI nr
Match: XP_022960262.1 (chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 hypothetical protein SDJN02_11907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 430.3 bits (1105), Expect = 1.7e-116
Identity = 257/375 (68.53%), Postives = 281/375 (74.93%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSA-GDKEK 60
           MLAVGDGR+  GGLTLNDVLT+HKR SP+PSP VRLNGRTLLDI+RDDVGK  A G++E+
Sbjct: 14  MLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRDDVGKSPAVGNRER 73

Query: 61  KSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSP------DEESPETTAPAAAA 120
           KSWKFLRDRLRL         N RSQIPPPNSLRFA  S       +EESPE+T P  AA
Sbjct: 74  KSWKFLRDRLRL---------NLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTPVVAA 133

Query: 121 ASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRS----LRPQ 180
           A    P   QISRR+ TRLSQN P    ATNS ++P N  + + +     RS    LRPQ
Sbjct: 134 A---VPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRPQ 193

Query: 181 ISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAH 240
           +SRRNSTR ++ERSESFTDLTEP  EGTR LSAALA ERS+SARE VA QEAADAE  A 
Sbjct: 194 MSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA- 253

Query: 241 QHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEE 300
                        D++D  A +TA ETAAPVRMSLMDLLEETDRQMGFEGSRY IE+E E
Sbjct: 254 -------------DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 313

Query: 301 EEEEEEEDEEEIEE---VDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGN 360
           EEEEEEE+EEE EE   V GGG ER CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGN
Sbjct: 314 EEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGN 362

Query: 361 CPLCNGFILEILDIF 362
           CPLCNGFILEILDIF
Sbjct: 374 CPLCNGFILEILDIF 362

[Close]

BLAST of MS002442 vs. NCBI nr
Match: XP_023004831.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 429.1 bits (1102), Expect = 3.8e-116
Identity = 257/375 (68.53%), Postives = 285/375 (76.00%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKG-SAGDKEK 60
           MLAVGDGR+  GGLTLNDVLT+HKR SP+PSP VRLNGRTLLDI+RDDVGK  +AG++E+
Sbjct: 14  MLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRDDVGKSPAAGNRER 73

Query: 61  KSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSP------DEESPETTAPAAAA 120
           KSWKFLRDRLRL         N RSQIPPPNSLRFA  S       +E+SPE+T P  AA
Sbjct: 74  KSWKFLRDRLRL---------NLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTPVVAA 133

Query: 121 ASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRS----LRPQ 180
           A    P   QISRRN TRLSQN P    ATNS ++P N  + + +     RS    LRPQ
Sbjct: 134 A---VPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRPQ 193

Query: 181 ISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAH 240
           +SRRNSTR ++ERSESFTDLTEP  EGTRRLSAALA ERS+SARE VA QEAADAE  A+
Sbjct: 194 MSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTAN 253

Query: 241 QHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEE 300
                       EDDE+  A +TA ETAAPVRMSLMDLLEETDRQMGFEGSRY IE+E E
Sbjct: 254 ------------EDDEE--ADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 313

Query: 301 EEEEEEEDEEEIEE---VDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGN 360
           EEEEEEE++EE E+   V GGG E+ CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGN
Sbjct: 314 EEEEEEEEDEEKEDEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGN 362

Query: 361 CPLCNGFILEILDIF 362
           CPLCNGFILEILDIF
Sbjct: 374 CPLCNGFILEILDIF 362

[Close]

BLAST of MS002442 vs. ExPASy TrEMBL
Match: A0A1S3C6E1 (nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 5.1e-119
Identity = 262/371 (70.62%), Postives = 279/371 (75.20%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKK 60
           MLAV DGR+ A G TLNDVLTI KR SPSPSPAVRL+GRTLLDIIRDDVGK    ++E+K
Sbjct: 14  MLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRDDVGKSPVSNRERK 73

Query: 61  SWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAG------MSPDEESPETTAPAAAAA 120
           SWKFLRDRLRL         N RSQIPPPNSLRF G      M  DE+SPE T    AA 
Sbjct: 74  SWKFLRDRLRL---------NLRSQIPPPNSLRFPGFTSADMMPNDEQSPEPT--TTAAV 133

Query: 121 SAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRN 180
           SA P  R QISRRN TR + + PP S ATNSD +P N + AAA        LRPQ+SR N
Sbjct: 134 SAAPSLR-QISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSRHN 193

Query: 181 STRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQE 240
           STR +VERSESFTDLTEPAREGTRRLSAALAEERS+SAREAVAAQEAADAEAIA   EQE
Sbjct: 194 STRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQE 253

Query: 241 HEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEE 300
            E+E E               T AP+RMSLMDLLEETDRQMGFEGS Y IE+EEEEEEEE
Sbjct: 254 EEQEAE--------------STPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEE 313

Query: 301 EEDEEEIEEV----DGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360
           EE E E+  V     GGG ERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC
Sbjct: 314 EEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 358

Query: 361 NGFILEILDIF 362
           NGFILEILDIF
Sbjct: 374 NGFILEILDIF 358

[Close]

BLAST of MS002442 vs. ExPASy TrEMBL
Match: A0A5D3E4J3 (Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 6.7e-119
Identity = 262/371 (70.62%), Postives = 279/371 (75.20%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKK 60
           MLAV DGR+ A G TLNDVLTI KR SPSPSPAVRL+GRTLLDIIRDDVGK    ++E+K
Sbjct: 14  MLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRDDVGKSPVSNRERK 73

Query: 61  SWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAG------MSPDEESPETTAPAAAAA 120
           SWKFLRDRLRL         N RSQIPPPNSLRF G      M  DE+SPE T    AA 
Sbjct: 74  SWKFLRDRLRL---------NLRSQIPPPNSLRFPGFTSAEMMPNDEQSPEPT--TTAAV 133

Query: 121 SAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRN 180
           SA P  R QISRRN TR + + PP S ATNSD +P N + AAA        LRPQ+SR N
Sbjct: 134 SAAPSLR-QISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSRHN 193

Query: 181 STRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQE 240
           STR +VERSESFTDLTEPAREGTRRLSAALAEERS+SAREAVAAQEAADAEAIA   EQE
Sbjct: 194 STRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQE 253

Query: 241 HEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEE 300
            E+E E               T AP+RMSLMDLLEETDRQMGFEGS Y IE+EEEEEEEE
Sbjct: 254 EEQEAE--------------STPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEE 313

Query: 301 EEDEEEIEEV----DGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360
           EE E E+  V     GGG ERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC
Sbjct: 314 EEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 358

Query: 361 NGFILEILDIF 362
           NGFILEILDIF
Sbjct: 374 NGFILEILDIF 358

[Close]

BLAST of MS002442 vs. ExPASy TrEMBL
Match: A0A6J1H6Y3 (chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461059 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 8.2e-117
Identity = 257/375 (68.53%), Postives = 281/375 (74.93%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSA-GDKEK 60
           MLAVGDGR+  GGLTLNDVLT+HKR SP+PSP VRLNGRTLLDI+RDDVGK  A G++E+
Sbjct: 14  MLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRDDVGKSPAVGNRER 73

Query: 61  KSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSP------DEESPETTAPAAAA 120
           KSWKFLRDRLRL         N RSQIPPPNSLRFA  S       +EESPE+T P  AA
Sbjct: 74  KSWKFLRDRLRL---------NLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTPVVAA 133

Query: 121 ASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRS----LRPQ 180
           A    P   QISRR+ TRLSQN P    ATNS ++P N  + + +     RS    LRPQ
Sbjct: 134 A---VPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRPQ 193

Query: 181 ISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAH 240
           +SRRNSTR ++ERSESFTDLTEP  EGTR LSAALA ERS+SARE VA QEAADAE  A 
Sbjct: 194 MSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA- 253

Query: 241 QHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEE 300
                        D++D  A +TA ETAAPVRMSLMDLLEETDRQMGFEGSRY IE+E E
Sbjct: 254 -------------DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 313

Query: 301 EEEEEEEDEEEIEE---VDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGN 360
           EEEEEEE+EEE EE   V GGG ER CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGN
Sbjct: 314 EEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGN 362

Query: 361 CPLCNGFILEILDIF 362
           CPLCNGFILEILDIF
Sbjct: 374 CPLCNGFILEILDIF 362

[Close]

BLAST of MS002442 vs. ExPASy TrEMBL
Match: A0A6J1KT79 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.8e-116
Identity = 257/375 (68.53%), Postives = 285/375 (76.00%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKG-SAGDKEK 60
           MLAVGDGR+  GGLTLNDVLT+HKR SP+PSP VRLNGRTLLDI+RDDVGK  +AG++E+
Sbjct: 14  MLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRDDVGKSPAAGNRER 73

Query: 61  KSWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAGMSP------DEESPETTAPAAAA 120
           KSWKFLRDRLRL         N RSQIPPPNSLRFA  S       +E+SPE+T P  AA
Sbjct: 74  KSWKFLRDRLRL---------NLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTPVVAA 133

Query: 121 ASAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRS----LRPQ 180
           A    P   QISRRN TRLSQN P    ATNS ++P N  + + +     RS    LRPQ
Sbjct: 134 A---VPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRPQ 193

Query: 181 ISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAH 240
           +SRRNSTR ++ERSESFTDLTEP  EGTRRLSAALA ERS+SARE VA QEAADAE  A+
Sbjct: 194 MSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTAN 253

Query: 241 QHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEE 300
                       EDDE+  A +TA ETAAPVRMSLMDLLEETDRQMGFEGSRY IE+E E
Sbjct: 254 ------------EDDEE--ADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 313

Query: 301 EEEEEEEDEEEIEE---VDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGN 360
           EEEEEEE++EE E+   V GGG E+ CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGN
Sbjct: 314 EEEEEEEEDEEKEDEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGN 362

Query: 361 CPLCNGFILEILDIF 362
           CPLCNGFILEILDIF
Sbjct: 374 CPLCNGFILEILDIF 362

[Close]

BLAST of MS002442 vs. ExPASy TrEMBL
Match: A0A0A0K6R9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 2.0e-107
Identity = 244/368 (66.30%), Postives = 264/368 (71.74%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVLTIHKRGSPSPSPAVRLNGRTLLDIIRDDVGKGSAGDKEKK 60
           MLAV DGRD AGG TLNDVL I KR  PS SPAVRL+GRTLLDIIRDDVGK    ++E+ 
Sbjct: 14  MLAVSDGRDLAGGFTLNDVLAIQKRALPSSSPAVRLHGRTLLDIIRDDVGKSPVSNRERT 73

Query: 61  SWKFLRDRLRLRRGLEISLRNSRSQIPPPNSLRFAG------MSPDEESPETTAPAAAAA 120
           SWKF RDRLRL         + RSQIPP NSLRF G      MS DE SPE T    AA 
Sbjct: 74  SWKFFRDRLRL---------SIRSQIPPSNSLRFPGLTSAEMMSNDEHSPEPT--TTAAV 133

Query: 121 SAPPPFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPNPGRSLRPQISRRN 180
           SA P  R QISRRN TRL+ +  P S ATNS+ +P N + AAA        LRPQ+SR N
Sbjct: 134 SAAPSLR-QISRRNSTRLNPSVQPSSEATNSNASPDNNSAAAASGSGGRSLLRPQMSRHN 193

Query: 181 STRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQE 240
           STR +VERSESFTDLTEP REGTRRLSAALAEERS+SAREAV AQEAADAEA   + EQ+
Sbjct: 194 STRFSVERSESFTDLTEPTREGTRRLSAALAEERSMSAREAVTAQEAADAEATVDEEEQQ 253

Query: 241 HEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEE 300
            E+               A  T APVRMSLMDLLEETDRQMGFEGS Y IE+E+EEEE E
Sbjct: 254 QEQ--------------VAESTPAPVRMSLMDLLEETDRQMGFEGSTYRIEDEDEEEEIE 313

Query: 301 EEDEEEIEEVDG-GGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGF 360
            E    +    G GG E +CCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGF
Sbjct: 314 NEVSTTVCGGGGSGGTEPHCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGF 355

Query: 361 ILEILDIF 362
           ILEILDIF
Sbjct: 374 ILEILDIF 355

[Close]

BLAST of MS002442 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-43
Identity = 145/383 (37.86%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 1   MLAVGDGRDFAGGLTLNDVL----TIHKRGSPSPSPAV-------RLNGRTLLDIIRDDV 60
           M A+    +   GL+L+ VL     I     PSP P         R   +TL DIIR++ 
Sbjct: 1   MSALKSRSNSLAGLSLDAVLGGEILIEPPSLPSPPPLPSKSLVPHRPTSQTLFDIIREEY 60

Query: 61  GKGSAGDKEKKSWKFLRDRLRLRR-----GLEISLRNSRSQIPPPNSLRFAGMSPDEESP 120
            K   G K++ +W+  R++LRL+R        + +  S   IP P  +  A  S      
Sbjct: 61  AK--EGHKDRTTWQIFREKLRLKRTGSAWTSSLHIPASDILIPNPKHIGTAFRSHSAGLN 120

Query: 121 ETTAPAAAAASAPP--PFRPQISRRNITRLSQNAPPPSHATNSDDAPVNTATAAAVLPN- 180
                 A   S PP    R   +R +  R+         + N DD+P       +VL + 
Sbjct: 121 IRDLVHAIPMSDPPGSSGRAMFTRGSSMRVGS-------SKNPDDSP-----DISVLEDG 180

Query: 181 -PGRSLRPQISRRNSTRLAVERSESFTDLTEPAREGTRRLSAALAEERSLSAREAVAAQE 240
            P RS +PQ+SR +S R   E  E+            R       EER +SAREAVAAQE
Sbjct: 181 PPSRSFKPQLSRHDSVRDHSEGEEN---------NRRRHPIVTFVEERQMSAREAVAAQE 240

Query: 241 AADAEAIAHQHEQEHEEEEEEEDDEDSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGS 300
           AA+AEA A    ++ ++++EE+D  ++    +++ +     MSLMDLLEETDRQMG  GS
Sbjct: 241 AAEAEAAAAGGSEDEDDDDEEDDSGETEEMKSSSASEPKQTMSLMDLLEETDRQMGLTGS 300

Query: 301 RYIIEEEE--EEEEEEEEDEEEIEEVDGGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSR 360
           RY ++E+E  EE+EE+E +EEE +   GG  E +CCVCMV+ KGA+F PCGHTFC+LCS+
Sbjct: 301 RYAMDEDEEYEEDEEDENNEEEGDSHGGGEGELSCCVCMVKIKGASFTPCGHTFCKLCSK 360

Query: 361 ELWVSRGNCPLCNGFILEILDIF 362
           EL   +G+CP+C+ F+LE L+IF
Sbjct: 361 ELMAQKGHCPVCSSFVLEFLEIF 360

[Close]

BLAST of MS002442 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-25
Identity = 84/176 (47.73%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 188 DLTEPAR--EGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQEHEEEEEEEDDE 247
           ++TE A   EG  RL A LAEER+LSARE                     EE   E + E
Sbjct: 124 NVTEEASSVEGRIRLGAVLAEERALSARE---------------------EETPAEREVE 183

Query: 248 DSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEEEEDEEEIEEVD 307
                        P RMSLM+LLEE + QM F                + E EEE+  V 
Sbjct: 184 -------------PARMSLMELLEENEGQMSF-------------VSVDGEAEEEVAAVT 243

Query: 308 GGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 362
               E +CCVCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  ILE+LD+F
Sbjct: 244 AA--EISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of MS002442 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-25
Identity = 84/176 (47.73%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 188 DLTEPAR--EGTRRLSAALAEERSLSAREAVAAQEAADAEAIAHQHEQEHEEEEEEEDDE 247
           ++TE A   EG  RL A LAEER+LSARE                     EE   E + E
Sbjct: 124 NVTEEASSVEGRIRLGAVLAEERALSARE---------------------EETPAEREVE 183

Query: 248 DSAAGATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEEEEDEEEIEEVD 307
                        P RMSLM+LLEE + QM F                + E EEE+  V 
Sbjct: 184 -------------PARMSLMELLEENEGQMSF-------------VSVDGEAEEEVAAVT 243

Query: 308 GGGPERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 362
               E +CCVCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  ILE+LD+F
Sbjct: 244 AA--EISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of MS002442 vs. TAIR 10
Match: AT4G13100.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-24
Identity = 65/119 (54.62%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 251 ATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEEEEDEEEIEEVDGGG-- 310
           A   E   P RMSLM+LLE+ D      G  Y +   +E E E  +        DGGG  
Sbjct: 153 AAEREEMQPPRMSLMELLEDND------GHMYELSARDEVEVEGRDG------CDGGGEA 212

Query: 311 ------PERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 362
                  E  CCVCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 213 VAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 259

[Close]

BLAST of MS002442 vs. TAIR 10
Match: AT4G13100.4 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-24
Identity = 65/119 (54.62%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 251 ATAAETAAPVRMSLMDLLEETDRQMGFEGSRYIIEEEEEEEEEEEEDEEEIEEVDGGG-- 310
           A   E   P RMSLM+LLE+ D      G  Y +   +E E E  +        DGGG  
Sbjct: 150 AAEREEMQPPRMSLMELLEDND------GHMYELSARDEVEVEGRDG------CDGGGEA 209

Query: 311 ------PERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 362
                  E  CCVCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 210 VAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256

The following BLAST results are available for this feature:

BLAST of MS002442 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458019.1	1.1e-118	70.62	PREDICTED: nucleolin-like [Cucumis melo]	[more]
KAA0026218.1	1.4e-118	70.62	nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis me...	[more]
XP_023522866.1	3.4e-117	68.72	chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960262.1	1.7e-116	68.53	chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 h...	[more]
XP_023004831.1	3.8e-116	68.53	nucleolin-like [Cucurbita maxima]	[more]

BLAST of MS002442 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6E1	5.1e-119	70.62	nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1	[more]
A0A5D3E4J3	6.7e-119	70.62	Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730...	[more]
A0A6J1H6Y3	8.2e-117	68.53	chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KT79	1.8e-116	68.53	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1	[more]
A0A0A0K6R9	2.0e-107	66.30	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 P...	[more]

BLAST of MS002442 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07120.1	2.7e-43	37.86	RING/U-box superfamily protein	[more]
AT3G25030.1	2.5e-25	47.73	RING/U-box superfamily protein	[more]
AT3G25030.2	2.5e-25	47.73	RING/U-box superfamily protein	[more]
AT4G13100.1	2.1e-24	54.62	RING/U-box superfamily protein	[more]
AT4G13100.4	2.1e-24	54.62	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 221..248
None	No IPR available	COILS	Coil	Coil	coord: 282..305
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 310..354 e-value: 5.6E-10 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..123
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 8..361
None	No IPR available	PANTHER	PTHR46629:SF13	OS01G0917900 PROTEIN	coord: 8..361
None	No IPR available	CDD	cd16449	RING-HC	coord: 313..350 e-value: 2.62138E-10 score: 53.2401
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 312..357
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 313..350 e-value: 7.4E-5 score: 32.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 313..351 score: 10.881201
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 283..361 e-value: 2.1E-13 score: 51.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002442.1	MS002442.1	mRNA