MS002419 (gene) Bitter gourd (TR) v1

Overview


Name	MS002419
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	scaffold30: 4790596 .. 4791342 (-)
RNA-Seq Expression	MS002419
Synteny	MS002419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGGTAATGCATTATCCCCCTGCATACTGATTCGTTTATTTTCGTTATTTATTGCAAATCTTGCTCTGTGGATGAGCATTTCTGTGGATAATCTAGGTACTGAGGAATGTTTTATGTTGATTTGGGGATTCTGTTTCCATAAATGTTGACGCTGCTGTGAAACGTTTGGATATTCTGCCCTGCCCTGGGACTGTTGTATTGAATCAATTATCAATGATTTTTGAAAAATTTAGGTTGTTGAATTATGGTCGGTTTGTTTATGTATTCGAATTTTGAATAATATATGTGCGTAGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGTAGGCTGTTGGAACTGCTGAGACCGCATACATTAATTTAATCTGTTGATTGAGAAATGTGTTCAATTATTGTTTTTATTTGGTGCAAATGCAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGGTA

mRNA sequence

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGGTA

Coding sequence (CDS)

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGGTA

Protein sequence

MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

Homology

[Close]

BLAST of MS002419 vs. NCBI nr
Match: XP_022144848.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia] >XP_022144849.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia])

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA
Sbjct: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ
Sbjct: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120

Query: 121 V 122
           +
Sbjct: 121 L 121

[Close]

BLAST of MS002419 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 5.3e-46
Identity = 92/121 (76.03%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR RSNSFRRS  Y++LPPQL+RLSVLKLDGSSFEVQ+AR A
Sbjct: 1   MSRIEPMVPDSC---CISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC + MNKED KISWPHVWGHFCLCYKHFKLI+DKS IKHFGIRDG+Q
Sbjct: 61  TVAAVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQ 118

Query: 121 V 122
           +
Sbjct: 121 I 118

[Close]

BLAST of MS002419 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 1   MSHIEPIVPDSC---CISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 118

Query: 121 V 122
           +
Sbjct: 121 L 118

[Close]

BLAST of MS002419 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 91/121 (75.21%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 121

Query: 121 V 122
           V
Sbjct: 124 V 121

[Close]

BLAST of MS002419 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-44
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 121

Query: 121 V 122
           +
Sbjct: 124 L 121

[Close]

BLAST of MS002419 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLINDKSHIKHFGIRDGEQV 122
            + KL++D + ++  GIR+  QV
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQV 134

[Close]

BLAST of MS002419 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQV 122
           L     KL  D+  ++ +GIR+ ++V
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEV 114

[Close]

BLAST of MS002419 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQV 122
           L     KL  D+  ++ +GIR+ ++V
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEV 123

[Close]

BLAST of MS002419 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQV 122
           L     KL  D+  ++ +GIR+ ++V
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEV 114

[Close]

BLAST of MS002419 vs. ExPASy TrEMBL
Match: A0A6J1CUD1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charantia OX=3673 GN=LOC111014434 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA
Sbjct: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ
Sbjct: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120

Query: 121 V 122
           +
Sbjct: 121 L 121

[Close]

BLAST of MS002419 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.4e-46
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 1   MSHIEPIVPDSC---CISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 118

Query: 121 V 122
           +
Sbjct: 121 L 118

[Close]

BLAST of MS002419 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-45
Identity = 91/121 (75.21%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 121

Query: 121 V 122
           V
Sbjct: 124 V 121

[Close]

BLAST of MS002419 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 121

Query: 121 V 122
           +
Sbjct: 124 L 121

[Close]

BLAST of MS002419 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 121

Query: 121 V 122
           +
Sbjct: 124 L 121

[Close]

BLAST of MS002419 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 27  RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKIS 86
           RR+ SY +LP + +RLSVLKLDGSSF+V V   ATV DL+ A+E+ F  +   K  +KIS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV-PKKGPSKIS 65

Query: 87  WPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV 122
           W HVWGHFCLC+   KLI D   I ++G++DG++V
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEV 99

[Close]

BLAST of MS002419 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 5.1e-23
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 9   PESCFCTSLSPRLRSNSF--RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLR 68
           P      SLSP    +    RRS +Y ++P + ++L+VLKLDGSSF +QV + ATV +L+
Sbjct: 5   PRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELK 64

Query: 69  DAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV 122
            AVE+ F  + ++    KISWPHVWG FCL Y+  +LIN+  ++  FGI+DG+Q+
Sbjct: 65  MAVEAAFSHLPISGPG-KISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQL 118

[Close]

BLAST of MS002419 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-22
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 23  SNSFRRSLSYQRLPPQ-LLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKE 82
           S S RRS SY +LPPQ  ++LSV+KL+GS F+V+VA+  +VA+L+ AVE VF  I   + 
Sbjct: 36  SISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVF-TISPLEG 95

Query: 83  DTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV 122
              ISW HVWGHFCLCY+  +L+NDK+ I++ G+ DG+Q+
Sbjct: 96  HGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQL 133

[Close]

BLAST of MS002419 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 8.4e-18
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 35  LPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHF 94
           +P + ++L+VLKLDGSSF   V + ATV +L+ AVE+ F  + ++    KISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 95  CLCYKHFKLINDKSHIKHFGIRDGEQV 122
           CL Y+  +LIN+  ++  FGI+DG+Q+
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQL 83

[Close]

BLAST of MS002419 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLINDKSHIKHFGIRDGEQV 122
            + KL++D + ++  GIR+  QV
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQV 134

The following BLAST results are available for this feature:

BLAST of MS002419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144848.1	2.1e-63	99.17	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia...	[more]
XP_038880358.1	5.3e-46	76.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_011655436.1	1.5e-45	76.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443963.1	1.3e-44	75.21	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_008443964.1	2.9e-44	74.38	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]

BLAST of MS002419 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.7e-10	40.96	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q3ZBQ4	9.4e-06	32.56	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q9BV90	9.4e-06	32.56	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	9.4e-06	32.56	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]

BLAST of MS002419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUD1	1.0e-63	99.17	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charant...	[more]
A0A0A0LT94	7.4e-46	76.03	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A1S3B9C0	6.3e-45	75.21	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A5A7U4H4	1.4e-44	74.38	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	1.4e-44	74.38	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of MS002419 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25340.1	1.8e-23	53.68	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	5.1e-23	45.22	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	5.6e-22	53.00	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	8.4e-18	48.28	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	1.2e-11	40.96	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 40..121 e-value: 1.8E-23 score: 82.4
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 40..121 e-value: 1.64377E-35 score: 115.308
None	No IPR available	GENE3D	3.10.20.90		coord: 36..121 e-value: 2.2E-29 score: 103.3
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 9..121
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 9..121
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 36..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002419.1	MS002419.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex