MS002413 (gene) Bitter gourd (TR) v1

Overview
NameMS002413
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear pore complex protein
Locationscaffold30: 4716153 .. 4716503 (-)
RNA-Seq ExpressionMS002413
SyntenyMS002413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

mRNA sequence

AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

Coding sequence (CDS)

AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

Protein sequence

RLRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVSFPFGGHGFPDGDGFPSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGLT
Homology
BLAST of MS002413 vs. NCBI nr
Match: RXI05695.1 (hypothetical protein DVH24_017737 [Malus domestica])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+LILRVVQR TAAS+S SP STGQHS   GSP P  T+PP RST  PSF+VS+GHV
Sbjct: 2   LRLRSLILRVVQRHTAASSSTSPCSTGQHSFTTGSPCPTWTNPPRRSTQAPSFNVSMGHV 61

Query: 62  SFPFGGHGFPDGDGF-----PSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGL 118
               GGHG P   GF     P TGG + GG   GGR TGGL GG VTGG  TGG + GG+
Sbjct: 62  FPGGGGHGVPGLGGFVAGGPPMTGGIIPGG-IIGGRVTGGLMGGIVTGGIVTGGFTMGGI 121

BLAST of MS002413 vs. NCBI nr
Match: EOY31170.1 (Uncharacterized protein TCM_047111, partial [Theobroma cacao])

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-17
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+L LRVV RQTAAS+S SP  TGQHS   GSP  MCT+PP RST  PSFSVSIG V
Sbjct: 2   LRLRSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSIGQV 61

Query: 62  SFPFGGHGFPDGDGFP----STGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGG 116
           +   GG     G  FP      GGTVTGG+  GG + GG+ GG + GG  TGG  TGG
Sbjct: 62  AVAGGG-----GQDFPLGGVVIGGTVTGGRLMGGFTIGGINGGRLIGGFTTGGSVTGG 114

BLAST of MS002413 vs. NCBI nr
Match: KAF9662862.1 (hypothetical protein SADUNF_Sadunf18G0098400 [Salix dunnii])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 77/158 (48.73%), Postives = 86/158 (54.43%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAAS+S SP   GQH    GSP P CT+PP RST  PSF+VSIGH+
Sbjct: 2   LRLRALILRVVHKQTAASSSTSPLRIGQHWFTTGSPRPTCTNPPRRSTQAPSFNVSIGHL 61

Query: 62  SFPFG--GHGFPDGDGFPSTGGT----------------------------------VTG 118
           S   G  GHGFP G GF  TGGT                                   TG
Sbjct: 62  SLGEGGDGHGFPLG-GFLITGGTGSTGGSTGGSGSTGGSGRGGSGSTGGSGSTGGSGSTG 121

BLAST of MS002413 vs. NCBI nr
Match: KAB5514652.1 (hypothetical protein DKX38_028558 [Salix brachista])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 79/127 (62.20%), Postives = 84/127 (66.14%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHKQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDGDGFPSTGGT-VTGGKPTGGRS-----TGGLTGGT--VTG--GKPTG 116
           S     GGHG P G G  STGGT  TGG  + G S     TG +TGGT  VTG  G  TG
Sbjct: 62  SLDEGGGGHGVPVG-GAGSTGGTGSTGGSGSTGGSGSTGGTGSVTGGTGSVTGGTGSVTG 121

BLAST of MS002413 vs. NCBI nr
Match: RCV22206.1 (hypothetical protein SETIT_4G202300v2 [Setaria italica])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 68/135 (50.37%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 11  VVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVSFP------ 70
           VVQR TAAS+S SP+STGQH    GSP+P CT PP+RSTH PSFS S G V         
Sbjct: 2   VVQRHTAASSSTSPSSTGQHLFTTGSPSPTCTRPPSRSTHAPSFSESAGQVGDDGVVGVE 61

Query: 71  --FGGHGFPDG-------DGFPSTGGTVTGGK---------------PTGGRSTGGLTGG 116
              GGHG   G       DG P  GGTVTGG                 TGG +TGG+ GG
Sbjct: 62  GGGGGHGVTGGPVTGGVVDGGPVIGGTVTGGPVIGGTVTGGPVIGGYVTGGPTTGGVVGG 121

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A498KIW7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017737 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+LILRVVQR TAAS+S SP STGQHS   GSP P  T+PP RST  PSF+VS+GHV
Sbjct: 2   LRLRSLILRVVQRHTAASSSTSPCSTGQHSFTTGSPCPTWTNPPRRSTQAPSFNVSMGHV 61

Query: 62  SFPFGGHGFPDGDGF-----PSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGL 118
               GGHG P   GF     P TGG + GG   GGR TGGL GG VTGG  TGG + GG+
Sbjct: 62  FPGGGGHGVPGLGGFVAGGPPMTGGIIPGG-IIGGRVTGGLMGGIVTGGIVTGGFTMGGI 121

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A6N2N0E2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 82/144 (56.94%), Postives = 85/144 (59.03%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV RQTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHRQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDG-----------------------DGFPSTGGTVTGGK-PTGGRSTG 118
           S     GGHGFP G                        G  STGGTVTGG   TGG   G
Sbjct: 62  SLDEGGGGHGFPVGGTGITGGTGSTGGSGSTGGSGNTGGSGSTGGTVTGGTGSTGGTGRG 121

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A061GMW5 (Uncharacterized protein (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_047111 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+L LRVV RQTAAS+S SP  TGQHS   GSP  MCT+PP RST  PSFSVSIG V
Sbjct: 2   LRLRSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSIGQV 61

Query: 62  SFPFGGHGFPDGDGFP----STGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGG 116
           +   GG     G  FP      GGTVTGG+  GG + GG+ GG + GG  TGG  TGG
Sbjct: 62  AVAGGG-----GQDFPLGGVVIGGTVTGGRLMGGFTIGGINGGRLIGGFTTGGSVTGG 114

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A5N5J6X5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.7e-16
Identity = 79/127 (62.20%), Postives = 84/127 (66.14%), Query Frame = 0

Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHKQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDGDGFPSTGGT-VTGGKPTGGRS-----TGGLTGGT--VTG--GKPTG 116
           S     GGHG P G G  STGGT  TGG  + G S     TG +TGGT  VTG  G  TG
Sbjct: 62  SLDEGGGGHGVPVG-GAGSTGGTGSTGGSGSTGGSGSTGGTGSVTGGTGSVTGGTGSVTG 121

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A2G9GKY8 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21529 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 68/117 (58.12%), Postives = 74/117 (63.25%), Query Frame = 0

Query: 3   RLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVS 62
           RLRALILRVV +Q+AAS S SP S GQH L AGSP  M TSPP RSTH PSFSVSIG V 
Sbjct: 3   RLRALILRVVHKQSAASASTSPVSRGQHLLTAGSPTLMFTSPPRRSTHAPSFSVSIGQVY 62

Query: 63  FPFGGHGFPDGDGFPSTGGTVTGGKPTGGRSTGGL---TGGTVTGGKPTGGRSTGGL 117
              G    P    F   GG  TGG  TGG +TGG+   + GTV GGK   G  TGG+
Sbjct: 63  LAAGRGAQP----FFHFGGLATGGTATGGTATGGIGIGSLGTVMGGKGRFGTETGGM 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RXI05695.14.8e-2061.98hypothetical protein DVH24_017737 [Malus domestica][more]
EOY31170.18.5e-1758.47Uncharacterized protein TCM_047111, partial [Theobroma cacao][more]
KAF9662862.15.5e-1648.73hypothetical protein SADUNF_Sadunf18G0098400 [Salix dunnii][more]
KAB5514652.11.6e-1562.20hypothetical protein DKX38_028558 [Salix brachista][more]
RCV22206.11.3e-1450.37hypothetical protein SETIT_4G202300v2 [Setaria italica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A498KIW72.3e-2061.98Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017737 PE=4 SV=1[more]
A0A6N2N0E23.7e-1856.94Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=... [more]
A0A061GMW54.1e-1758.47Uncharacterized protein (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_047111 PE=4... [more]
A0A5N5J6X57.7e-1662.20Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1[more]
A0A2G9GKY86.5e-1558.12Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21529 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002413.1MS002413.1mRNA