MS002413 (gene) Bitter gourd (TR) v1

Overview


Name	MS002413
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nuclear pore complex protein
Location	scaffold30: 4716153 .. 4716503 (-)
RNA-Seq Expression	MS002413
Synteny	MS002413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

mRNA sequence

AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

Coding sequence (CDS)

AGATTAAGGTTAAGAGCCTTGATCTTAAGGGTAGTGCAAAGGCAGACCGCGGCTTCCACCTCAGCCAGCCCTGCAAGCACAGGGCAGCACTCGTTGGCCGCAGGGTCCCCTAACCCAATGTGCACCAGCCCTCCCAACAGATCCACGCACCCTCCCAGTTTCAGCGTGTCAATTGGGCACGTCTCTTTCCCCTTCGGCGGGCACGGCTTTCCCGACGGCGATGGCTTTCCCAGCACTGGGGGCACCGTCACAGGCGGCAAGCCAACTGGCGGGAGGTCCACGGGCGGCTTGACGGGGGGCACCGTCACGGGTGGCAAGCCAACTGGCGGGAGGTCCACGGGTGGCTTGACG

Protein sequence

RLRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVSFPFGGHGFPDGDGFPSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGLT

Homology

[Close]

BLAST of MS002413 vs. NCBI nr
Match: RXI05695.1 (hypothetical protein DVH24_017737 [Malus domestica])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+LILRVVQR TAAS+S SP STGQHS   GSP P  T+PP RST  PSF+VS+GHV
Sbjct: 2   LRLRSLILRVVQRHTAASSSTSPCSTGQHSFTTGSPCPTWTNPPRRSTQAPSFNVSMGHV 61

Query: 62  SFPFGGHGFPDGDGF-----PSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGL 118
               GGHG P   GF     P TGG + GG   GGR TGGL GG VTGG  TGG + GG+
Sbjct: 62  FPGGGGHGVPGLGGFVAGGPPMTGGIIPGG-IIGGRVTGGLMGGIVTGGIVTGGFTMGGI 121

[Close]

BLAST of MS002413 vs. NCBI nr
Match: EOY31170.1 (Uncharacterized protein TCM_047111, partial [Theobroma cacao])

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-17
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+L LRVV RQTAAS+S SP  TGQHS   GSP  MCT+PP RST  PSFSVSIG V
Sbjct: 2   LRLRSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSIGQV 61

Query: 62  SFPFGGHGFPDGDGFP----STGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGG 116
           +   GG     G  FP      GGTVTGG+  GG + GG+ GG + GG  TGG  TGG
Sbjct: 62  AVAGGG-----GQDFPLGGVVIGGTVTGGRLMGGFTIGGINGGRLIGGFTTGGSVTGG 114

[Close]

BLAST of MS002413 vs. NCBI nr
Match: KAF9662862.1 (hypothetical protein SADUNF_Sadunf18G0098400 [Salix dunnii])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 77/158 (48.73%), Postives = 86/158 (54.43%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAAS+S SP   GQH    GSP P CT+PP RST  PSF+VSIGH+
Sbjct: 2   LRLRALILRVVHKQTAASSSTSPLRIGQHWFTTGSPRPTCTNPPRRSTQAPSFNVSIGHL 61

Query: 62  SFPFG--GHGFPDGDGFPSTGGT----------------------------------VTG 118
           S   G  GHGFP G GF  TGGT                                   TG
Sbjct: 62  SLGEGGDGHGFPLG-GFLITGGTGSTGGSTGGSGSTGGSGRGGSGSTGGSGSTGGSGSTG 121

[Close]

BLAST of MS002413 vs. NCBI nr
Match: KAB5514652.1 (hypothetical protein DKX38_028558 [Salix brachista])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 79/127 (62.20%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHKQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDGDGFPSTGGT-VTGGKPTGGRS-----TGGLTGGT--VTG--GKPTG 116
           S     GGHG P G G  STGGT  TGG  + G S     TG +TGGT  VTG  G  TG
Sbjct: 62  SLDEGGGGHGVPVG-GAGSTGGTGSTGGSGSTGGSGSTGGTGSVTGGTGSVTGGTGSVTG 121

[Close]

BLAST of MS002413 vs. NCBI nr
Match: RCV22206.1 (hypothetical protein SETIT_4G202300v2 [Setaria italica])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 68/135 (50.37%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 11  VVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVSFP------ 70
           VVQR TAAS+S SP+STGQH    GSP+P CT PP+RSTH PSFS S G V         
Sbjct: 2   VVQRHTAASSSTSPSSTGQHLFTTGSPSPTCTRPPSRSTHAPSFSESAGQVGDDGVVGVE 61

Query: 71  --FGGHGFPDG-------DGFPSTGGTVTGGK---------------PTGGRSTGGLTGG 116
              GGHG   G       DG P  GGTVTGG                 TGG +TGG+ GG
Sbjct: 62  GGGGGHGVTGGPVTGGVVDGGPVIGGTVTGGPVIGGTVTGGPVIGGYVTGGPTTGGVVGG 121

[Close]

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A498KIW7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017737 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+LILRVVQR TAAS+S SP STGQHS   GSP P  T+PP RST  PSF+VS+GHV
Sbjct: 2   LRLRSLILRVVQRHTAASSSTSPCSTGQHSFTTGSPCPTWTNPPRRSTQAPSFNVSMGHV 61

Query: 62  SFPFGGHGFPDGDGF-----PSTGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGGL 118
               GGHG P   GF     P TGG + GG   GGR TGGL GG VTGG  TGG + GG+
Sbjct: 62  FPGGGGHGVPGLGGFVAGGPPMTGGIIPGG-IIGGRVTGGLMGGIVTGGIVTGGFTMGGI 121

[Close]

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A6N2N0E2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 82/144 (56.94%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV RQTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHRQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDG-----------------------DGFPSTGGTVTGGK-PTGGRSTG 118
           S     GGHGFP G                        G  STGGTVTGG   TGG   G
Sbjct: 62  SLDEGGGGHGFPVGGTGITGGTGSTGGSGSTGGSGNTGGSGSTGGTVTGGTGSTGGTGRG 121

[Close]

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A061GMW5 (Uncharacterized protein (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_047111 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLR+L LRVV RQTAAS+S SP  TGQHS   GSP  MCT+PP RST  PSFSVSIG V
Sbjct: 2   LRLRSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSIGQV 61

Query: 62  SFPFGGHGFPDGDGFP----STGGTVTGGKPTGGRSTGGLTGGTVTGGKPTGGRSTGG 116
           +   GG     G  FP      GGTVTGG+  GG + GG+ GG + GG  TGG  TGG
Sbjct: 62  AVAGGG-----GQDFPLGGVVIGGTVTGGRLMGGFTIGGINGGRLIGGFTTGGSVTGG 114

[Close]

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A5N5J6X5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.7e-16
Identity = 79/127 (62.20%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   LRLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHV 61
           LRLRALILRVV +QTAASTS SP   GQH    GSP+P CT+PP RST  PSFSVSIGHV
Sbjct: 2   LRLRALILRVVHKQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGHV 61

Query: 62  SFP--FGGHGFPDGDGFPSTGGT-VTGGKPTGGRS-----TGGLTGGT--VTG--GKPTG 116
           S     GGHG P G G  STGGT  TGG  + G S     TG +TGGT  VTG  G  TG
Sbjct: 62  SLDEGGGGHGVPVG-GAGSTGGTGSTGGSGSTGGSGSTGGTGSVTGGTGSVTGGTGSVTG 121

[Close]

BLAST of MS002413 vs. ExPASy TrEMBL
Match: A0A2G9GKY8 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21529 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 68/117 (58.12%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 3   RLRALILRVVQRQTAASTSASPASTGQHSLAAGSPNPMCTSPPNRSTHPPSFSVSIGHVS 62
           RLRALILRVV +Q+AAS S SP S GQH L AGSP  M TSPP RSTH PSFSVSIG V 
Sbjct: 3   RLRALILRVVHKQSAASASTSPVSRGQHLLTAGSPTLMFTSPPRRSTHAPSFSVSIGQVY 62

Query: 63  FPFGGHGFPDGDGFPSTGGTVTGGKPTGGRSTGGL---TGGTVTGGKPTGGRSTGGL 117
              G    P    F   GG  TGG  TGG +TGG+   + GTV GGK   G  TGG+
Sbjct: 63  LAAGRGAQP----FFHFGGLATGGTATGGTATGGIGIGSLGTVMGGKGRFGTETGGM 115

The following BLAST results are available for this feature:

BLAST of MS002413 vs. NCBI nr


Match Name	E-value	Identity	Description
RXI05695.1	4.8e-20	61.98	hypothetical protein DVH24_017737 [Malus domestica]	[more]
EOY31170.1	8.5e-17	58.47	Uncharacterized protein TCM_047111, partial [Theobroma cacao]	[more]
KAF9662862.1	5.5e-16	48.73	hypothetical protein SADUNF_Sadunf18G0098400 [Salix dunnii]	[more]
KAB5514652.1	1.6e-15	62.20	hypothetical protein DKX38_028558 [Salix brachista]	[more]
RCV22206.1	1.3e-14	50.37	hypothetical protein SETIT_4G202300v2 [Setaria italica]	[more]

BLAST of MS002413 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498KIW7	2.3e-20	61.98	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017737 PE=4 SV=1	[more]
A0A6N2N0E2	3.7e-18	56.94	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=...	[more]
A0A061GMW5	4.1e-17	58.47	Uncharacterized protein (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_047111 PE=4...	[more]
A0A5N5J6X5	7.7e-16	62.20	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1	[more]
A0A2G9GKY8	6.5e-15	58.12	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21529 P...	[more]

BLAST of MS002413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002413.1	MS002413.1	mRNA