MS002398 (gene) Bitter gourd (TR) v1

Overview


Name	MS002398
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold30: 4590973 .. 4592484 (+)
RNA-Seq Expression	MS002398
Synteny	MS002398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTATCTTACGTATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTCAGAAATTTTACCCATCCTAAAATTGGGAAACTATTTCTACTCTACTTTGTTATTTAAACTTGTATGCTTCCTTGGCCTTGGTTCCACCTTCAGTGAGTAGACAAAAGAATAGTTCTATCCTTTCCCTTTCTCGAGGAACATTTTTGTTAAGTTCTCTTTTTAGTGGATCACAATCTATAAAAGCTAAGCTGCATTGAACCAGCAGGATCAGAGTCTTGCTCGCCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAGACCACATAGGTACCCTTTTTGAAGTTCCTAAACACGGCTGTACGCTTTTTCTCAGAGGGAATGGGAGTCTATTTGTTGCAATGACATGTTCACTTGTATGATCTTATATGGTATAAGGTCTAGAAAATTTGTACTCCACATATTATATGGCCATATAATCAGATGAAAAGACCCAAAAACATAAACTATGCAAGTATGAGGTGATTTGTATACCACATCTCTGATGGAATAAATAAGCATAAGTAAAACTCCAACATTTCTTCTGGTTGTGCCTTTAGGTTGTTCTCTTTTGGCCACTTTGGCTTTTTGAATATATAGTTTCCGTTTCTTATCAGAGAAAAAAAACATTTCTTCTGGTTGGATGACTATTGCACCGATTCTTTGAATTAGATTTCATATTCTTTATGACATCAATATATTCAGTATCGGTCGCCTATTTTTCTATCTCATTTATCTGCAGTAAGCAGTTCTGGTCATATTCTGTCATTGAAAGAACCATAAATTGTATGGCAGGAAACACTTATTTACGGAGGGAAAATGCCCTAATTATATATCATATACCTCGAATCAAGTTAGAATCTCCATCTAGATAAATTGTAATGATCTTCCCCTCATCCCAGACCATTTGAAGCTCTAGCTTTTGTGGGGGAAGATAATTTGCTTCCTTCATTGGTGATGTTGTTATTCGTTCTGTATTAATTCAACTTTTTGCATTGATTTTAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTATGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGAGGACAGGCA

mRNA sequence

TCTTATCTTACGTATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGCCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAGACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTATGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGAGGACAGGCA

Coding sequence (CDS)

TCTTATCTTACGTATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGCCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAGACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTATGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGAGGACAGGCA

Protein sequence

SYLTYVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA

Homology

[Close]

BLAST of MS002398 vs. NCBI nr
Match: XP_022134599.1 (uncharacterized protein LOC111006826 [Momordica charantia])

HSP 1 Score: 377.1 bits (967), Expect = 9.0e-101
Identity = 182/186 (97.85%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 19  HLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 78

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFP+HIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL
Sbjct: 79  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 138

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD
Sbjct: 139 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 198

Query: 185 SKGGQA 191
           SKGGQA
Sbjct: 199 SKGGQA 204

[Close]

BLAST of MS002398 vs. NCBI nr
Match: XP_038878632.1 (uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida])

HSP 1 Score: 339.7 bits (870), Expect = 1.6e-89
Identity = 160/185 (86.49%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQMDV SEED+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+T
Sbjct: 18  HLSGMVPFSNQMDVRSEEDRSPARPVFMKRSRHQYSHQYCRRGSTSHANASMSRENRVKT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPDHIESIE TFWGPERIRY+S GKDA SSHG+RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKDAFSSHGMRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. NCBI nr
Match: XP_038878631.1 (uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 3.9e-88
Identity = 160/186 (86.02%), Postives = 173/186 (93.01%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEE-DQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVR 64
           +++G+VPFSNQMDV SEE D+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+
Sbjct: 18  HLSGMVPFSNQMDVRSEEQDRSPARPVFMKRSRHQYSHQYCRRGSTSHANASMSRENRVK 77

Query: 65  TVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK 124
           TVLEERPAFKFAAHCNSEFPDHIESIE TFWGPERIRY+S GKDA SSHG+RM+CGICQK
Sbjct: 78  TVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKDAFSSHGMRMVCGICQK 137

Query: 125 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKID 184
           LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++D
Sbjct: 138 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPPPEVD 197

Query: 185 DSKGGQ 190
           DSKGG+
Sbjct: 198 DSKGGE 203

[Close]

BLAST of MS002398 vs. NCBI nr
Match: TYK06338.1 (uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 4.3e-87
Identity = 160/185 (86.49%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH VRM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLVRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. NCBI nr
Match: XP_008443927.1 (PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA0050085.1 uncharacterized protein E6C27_scaffold675G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 9.6e-87
Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. ExPASy TrEMBL
Match: A0A6J1BZ68 (uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006826 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 182/186 (97.85%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 19  HLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 78

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFP+HIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL
Sbjct: 79  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 138

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD
Sbjct: 139 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 198

Query: 185 SKGGQA 191
           SKGGQA
Sbjct: 199 SKGGQA 204

[Close]

BLAST of MS002398 vs. ExPASy TrEMBL
Match: A0A5D3C5B4 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00020 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.1e-87
Identity = 160/185 (86.49%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH VRM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLVRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. ExPASy TrEMBL
Match: A0A5A7U906 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00690 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.7e-87
Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. ExPASy TrEMBL
Match: A0A1S3B956 (uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.7e-87
Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 5   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 65  VLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 124
           VLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKL 137

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 185 SKGGQ 190
           SKGG+
Sbjct: 198 SKGGE 202

[Close]

BLAST of MS002398 vs. ExPASy TrEMBL
Match: A0A1S4DUW7 (uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.0e-86
Identity = 159/182 (87.36%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 8   GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLE 67
           G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLE
Sbjct: 22  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLE 81

Query: 68  ERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKLMRR 127
           ERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKLMRR
Sbjct: 82  ERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRR 141

Query: 128 KLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKG 187
           KLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKG
Sbjct: 142 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKG 201

Query: 188 GQ 190
           G+
Sbjct: 202 GE 203

[Close]

BLAST of MS002398 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-12
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 115 RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPL 174
           + +CG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE  +   ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 334

Query: 175 CT 177
           CT
Sbjct: 338 CT 334

[Close]

BLAST of MS002398 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 88  SIENTFWGPERIRYS--SLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAA 147
           S +N   G  R R S  S  + + S    +  CG C KL+  +     + ++  +LP+ A
Sbjct: 241 SFDNEHLGSGRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPA 300

Query: 148 VLVCGHVYHADCLEIRSKVEDRSDPPCPLCTE 178
           VL CGHVYHA CLE  +   ++ DP CP+CTE
Sbjct: 301 VLACGHVYHAACLETMTNETEKYDPTCPICTE 327

[Close]

BLAST of MS002398 vs. TAIR 10
Match: AT2G21500.2 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 88  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAV 147
           S +N  +G  R +  +LG    +    +  CG C + L  + L       +++EL VAA+
Sbjct: 224 SYDNECFGLRRDKIDNLGSRKSND---QQNCGACSRSLSEKSLLSSQKIFATNELSVAAI 283

Query: 148 LVCGHVYHADCLEIRSKVEDRSDPPCPLCT 177
           L CGHVYH++CLE  +   D+ DP CP+CT
Sbjct: 284 LACGHVYHSECLEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of MS002398 vs. TAIR 10
Match: AT2G21500.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 88  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAV 147
           S +N  +G  R +  +LG    +    +  CG C + L  + L       +++EL VAA+
Sbjct: 224 SYDNECFGLRRDKIDNLGSRKSND---QQNCGACSRSLSEKSLLSSQKIFATNELSVAAI 283

Query: 148 LVCGHVYHADCLEIRSKVEDRSDPPCPLCT 177
           L CGHVYH++CLE  +   D+ DP CP+CT
Sbjct: 284 LACGHVYHSECLEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of MS002398 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 104 LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 163
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 164 CLEIRSKVEDRSDPPCPLCT 177
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

The following BLAST results are available for this feature:

BLAST of MS002398 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134599.1	9.0e-101	97.85	uncharacterized protein LOC111006826 [Momordica charantia]	[more]
XP_038878632.1	1.6e-89	86.49	uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]	[more]
XP_038878631.1	3.9e-88	86.02	uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]	[more]
TYK06338.1	4.3e-87	86.49	uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]	[more]
XP_008443927.1	9.6e-87	85.95	PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA00...	[more]

BLAST of MS002398 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ68	4.3e-101	97.85	uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3C5B4	2.1e-87	86.49	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U906	4.7e-87	85.95	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3B956	4.7e-87	85.95	uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DUW7	1.0e-86	87.36	uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS002398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	8.3e-12	45.16	RING/U-box superfamily protein	[more]
AT1G19680.1	1.4e-11	38.04	RING/U-box superfamily protein	[more]
AT2G21500.2	5.4e-11	36.67	RING/U-box superfamily protein	[more]
AT2G21500.1	5.4e-11	36.67	RING/U-box superfamily protein	[more]
AT4G39140.1	5.4e-11	41.25	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..175 e-value: 3.2E-4 score: 30.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..176 score: 9.863244
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 103..189 e-value: 2.0E-7 score: 32.5
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 118..173 e-value: 2.1E-5 score: 24.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..190
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 18..182
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 18..182
None	No IPR available	CDD	cd16448	RING-H2	coord: 118..175 e-value: 1.47869E-4 score: 36.2759
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 117..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002398.1	MS002398.1	mRNA