MS002383 (gene) Bitter gourd (TR) v1

Overview


Name	MS002383
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 4499173 .. 4499373 (-)
RNA-Seq Expression	MS002383
Synteny	MS002383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATGAGGAAGGAGAAAACTTTAAAAGGGGCAGTCCCATATCAAAGAAAGAGGAGCTGAGTGTGAAAGATAAGAAGGAATTGGACAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCAAGAGCATTATCCAGACCTCGTAGACATTGCAGAGATGGACTATTCTCCAGCAAAGAGAAAGCCTCCAATACATAAC

mRNA sequence

AATAATGAGGAAGGAGAAAACTTTAAAAGGGGCAGTCCCATATCAAAGAAAGAGGAGCTGAGTGTGAAAGATAAGAAGGAATTGGACAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCAAGAGCATTATCCAGACCTCGTAGACATTGCAGAGATGGACTATTCTCCAGCAAAGAGAAAGCCTCCAATACATAAC

Coding sequence (CDS)

AATAATGAGGAAGGAGAAAACTTTAAAAGGGGCAGTCCCATATCAAAGAAAGAGGAGCTGAGTGTGAAAGATAAGAAGGAATTGGACAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCAAGAGCATTATCCAGACCTCGTAGACATTGCAGAGATGGACTATTCTCCAGCAAAGAGAAAGCCTCCAATACATAAC

Protein sequence

NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN

Homology

[Close]

BLAST of MS002383 vs. NCBI nr
Match: XP_022135297.1 (uncharacterized protein LOC111007293 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK
Sbjct: 127 NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 186

Query: 61  RKPPIHN 68
           RKPPIHN
Sbjct: 187 RKPPIHN 193

[Close]

BLAST of MS002383 vs. NCBI nr
Match: XP_022135362.1 (uncharacterized protein LOC111007333 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK
Sbjct: 88  NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 147

Query: 61  RKPPIHN 68
           RKPPIHN
Sbjct: 148 RKPPIHN 154

[Close]

BLAST of MS002383 vs. NCBI nr
Match: XP_022159421.1 (uncharacterized protein LOC111025844 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NN+EG NF+R +PISKKEELSVKDKKELDNSEAVSENLEAGQEH PDL DIAEMDYS A+
Sbjct: 88  NNDEGGNFRRANPISKKEELSVKDKKELDNSEAVSENLEAGQEHNPDLGDIAEMDYSLAR 147

Query: 61  RKPPIHN 68
            KPPIH+
Sbjct: 148 GKPPIHH 154

[Close]

BLAST of MS002383 vs. NCBI nr
Match: KAA0050046.1 (uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   NNEEGENFKRGSPIS--KKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSP 60
           NNEE EN+K+G+P S  K+E  SVK K +L+NSEAVS+NLEA      DL+DIAEMDYSP
Sbjct: 90  NNEE-ENYKKGNPKSSNKEESSSVKKKDDLENSEAVSKNLEAAL----DLIDIAEMDYSP 149

Query: 61  AKRKPPIHN 68
           AKRKPPIHN
Sbjct: 150 AKRKPPIHN 153

[Close]

BLAST of MS002383 vs. NCBI nr
Match: XP_038876887.1 (uncharacterized protein LOC120069249 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 2   NEEGENFKRGSPISK--KEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPA 61
           N EG   K+G+P+S   KE+ SVK K  L+NSEAVS+NLEA      DL+DIAEMDYSPA
Sbjct: 94  NNEGN--KKGNPMSSSHKEDPSVKRKDNLENSEAVSKNLEANL----DLIDIAEMDYSPA 153

Query: 62  KRKPPIHN 68
           KRKPPIHN
Sbjct: 154 KRKPPIHN 155

[Close]

BLAST of MS002383 vs. ExPASy TrEMBL
Match: A0A6J1C2B2 (uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007293 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK
Sbjct: 127 NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 186

Query: 61  RKPPIHN 68
           RKPPIHN
Sbjct: 187 RKPPIHN 193

[Close]

BLAST of MS002383 vs. ExPASy TrEMBL
Match: A0A6J1C2H1 (uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007333 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK
Sbjct: 88  NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 147

Query: 61  RKPPIHN 68
           RKPPIHN
Sbjct: 148 RKPPIHN 154

[Close]

BLAST of MS002383 vs. ExPASy TrEMBL
Match: A0A6J1E3V7 (uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025844 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   NNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAK 60
           NN+EG NF+R +PISKKEELSVKDKKELDNSEAVSENLEAGQEH PDL DIAEMDYS A+
Sbjct: 88  NNDEGGNFRRANPISKKEELSVKDKKELDNSEAVSENLEAGQEHNPDLGDIAEMDYSLAR 147

Query: 61  RKPPIHN 68
            KPPIH+
Sbjct: 148 GKPPIHH 154

[Close]

BLAST of MS002383 vs. ExPASy TrEMBL
Match: A0A5A7U792 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00250 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   NNEEGENFKRGSPIS--KKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSP 60
           NNEE EN+K+G+P S  K+E  SVK K +L+NSEAVS+NLEA      DL+DIAEMDYSP
Sbjct: 90  NNEE-ENYKKGNPKSSNKEESSSVKKKDDLENSEAVSKNLEAAL----DLIDIAEMDYSP 149

Query: 61  AKRKPPIHN 68
           AKRKPPIHN
Sbjct: 150 AKRKPPIHN 153

[Close]

BLAST of MS002383 vs. ExPASy TrEMBL
Match: A0A0A0LYZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 2   NEEGENFKRG-SPIS--KKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSP 61
           N EG N+K+G SP S  K+E  SVK K  L+NSEAVS+NLEA      DL+DIAEMDYSP
Sbjct: 90  NNEG-NYKKGISPKSSNKEESSSVKKKDNLENSEAVSKNLEAAL----DLIDIAEMDYSP 149

Query: 62  AKRKPPIHN 68
           AKRKPPIHN
Sbjct: 150 AKRKPPIHN 153

The following BLAST results are available for this feature:

BLAST of MS002383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135297.1	1.8e-27	100.00	uncharacterized protein LOC111007293 [Momordica charantia]	[more]
XP_022135362.1	1.8e-27	100.00	uncharacterized protein LOC111007333 [Momordica charantia]	[more]
XP_022159421.1	3.6e-20	83.58	uncharacterized protein LOC111025844 [Momordica charantia]	[more]
KAA0050046.1	3.0e-11	68.12	uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa]	[more]
XP_038876887.1	4.9e-09	64.71	uncharacterized protein LOC120069249 [Benincasa hispida]	[more]

BLAST of MS002383 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2B2	8.6e-28	100.00	uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C2H1	8.6e-28	100.00	uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E3V7	1.7e-20	83.58	uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7U792	1.5e-11	68.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LYZ1	2.3e-09	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1	[more]

BLAST of MS002383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 11..67
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002383.1	MS002383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity