MS002381 (gene) Bitter gourd (TR) v1

Overview


Name	MS002381
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	E3 ubiquitin-protein ligase RNF12-B-like isoform X1
Location	scaffold30: 4490897 .. 4491049 (-)
RNA-Seq Expression	MS002381
Synteny	MS002381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAGCTGTAGTCGTCTGGGGTCGCGCCCTTCTCGCTCCCGAGATAACCGCACCAACCGCTCCAACTTCTGTTCTCTCTTCTGCGGTGCTTCCACTTCTCGCGCGATTCATCGGGTATTTTCCCCTTCCCGTAATCTTATTCTTCAT

mRNA sequence

ATGGGTTTGAGCTGTAGTCGTCTGGGGTCGCGCCCTTCTCGCTCCCGAGATAACCGCACCAACCGCTCCAACTTCTGTTCTCTCTTCTGCGGTGCTTCCACTTCTCGCGCGATTCATCGGGTATTTTCCCCTTCCCGTAATCTTATTCTTCAT

Coding sequence (CDS)

ATGGGTTTGAGCTGTAGTCGTCTGGGGTCGCGCCCTTCTCGCTCCCGAGATAACCGCACCAACCGCTCCAACTTCTGTTCTCTCTTCTGCGGTGCTTCCACTTCTCGCGCGATTCATCGGGTATTTTCCCCTTCCCGTAATCTTATTCTTCAT

Protein sequence

MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH

Homology

[Close]

BLAST of MS002381 vs. NCBI nr
Match: XP_022135151.1 (uncharacterized protein LOC111007190 isoform X1 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHR+   +    +H
Sbjct: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRMEDSTAQFPVH 51

[Close]

BLAST of MS002381 vs. NCBI nr
Match: XP_022987679.1 (uncharacterized RING finger protein C4G3.12c-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. NCBI nr
Match: XP_022987678.1 (uncharacterized RING finger protein C4G3.12c-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. NCBI nr
Match: XP_023515421.1 (uncharacterized protein LOC111779586 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. NCBI nr
Match: XP_022921926.1 (uncharacterized RING finger protein C4G3.12c-like isoform X1 [Cucurbita moschata] >KAG6589802.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. ExPASy TrEMBL
Match: A0A6J1BZU1 (uncharacterized protein LOC111007190 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007190 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHR+   +    +H
Sbjct: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRMEDSTAQFPVH 51

[Close]

BLAST of MS002381 vs. ExPASy TrEMBL
Match: A0A6J1JJJ1 (uncharacterized RING finger protein C4G3.12c-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485162 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. ExPASy TrEMBL
Match: A0A6J1JK55 (uncharacterized RING finger protein C4G3.12c-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485162 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. ExPASy TrEMBL
Match: A0A6J1E1R4 (uncharacterized RING finger protein C4G3.12c-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430037 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

[Close]

BLAST of MS002381 vs. ExPASy TrEMBL
Match: A0A6J1E2Q3 (uncharacterized RING finger protein C4G3.12c-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430037 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MGLSCSRLGSRPSRSRDNRTNRSNFCSLFCGASTSRAIHRVFSPSRNLILH 52
          MG SCSRLGSRPSRSRD RTNRS FCSLFCGAS+SRAIH++   +   ++H
Sbjct: 1  MGSSCSRLGSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSTAQFLVH 51

The following BLAST results are available for this feature:

BLAST of MS002381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135151.1	1.9e-13	80.39	uncharacterized protein LOC111007190 isoform X1 [Momordica charantia]	[more]
XP_022987679.1	8.8e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X2 [Cucurbita maxima]	[more]
XP_022987678.1	8.8e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X1 [Cucurbita maxima]	[more]
XP_023515421.1	8.8e-11	70.59	uncharacterized protein LOC111779586 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022921926.1	8.8e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X1 [Cucurbita moschata...	[more]

BLAST of MS002381 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZU1	9.2e-14	80.39	uncharacterized protein LOC111007190 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JJJ1	4.3e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1JK55	4.3e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1E1R4	4.3e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X2 OS=Cucurbita moscha...	[more]
A0A6J1E2Q3	4.3e-11	70.59	uncharacterized RING finger protein C4G3.12c-like isoform X1 OS=Cucurbita moscha...	[more]

BLAST of MS002381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002381.1	MS002381.1	mRNA