MS002372 (gene) Bitter gourd (TR) v1

Overview


Name	MS002372
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 4455897 .. 4456181 (+)
RNA-Seq Expression	MS002372
Synteny	MS002372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTTGTCGGATCTAACAGGAGA

mRNA sequence

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTTGTCGGATCTAACAGGAGA

Coding sequence (CDS)

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTTGTCGGATCTAACAGGAGA

Protein sequence

MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAWSEGSLAIMASASASGISSPSSPTDQVESLVGSNRR

Homology

[Close]

BLAST of MS002372 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD  L  VYHGCIA  DA IDRRPYHKNC CALHDR NRRCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASASGISSPSSPT-DQVESLVGSNRR 96
          SEG LA++A+++ASG+SSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESL-GSYKR 95

[Close]

BLAST of MS002372 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 71/95 (74.74%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD L  SVYHGCIA  DAEI RRPYHKNCGCALHDR NRRCSH+ SKH++VSYPIRRAW
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61 SEGSLAIMASASASGISSPSSPTDQVESLVGSNRR 96
          SEG LA MA+AS SGISSPSS        +GSNRR
Sbjct: 61 SEGCLA-MAAASGSGISSPSSSPSMESEGLGSNRR 94

[Close]

BLAST of MS002372 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD LL  VY+GCI + DAEIDRRPYHKNC CALHDR N+RCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASASGISSPSSPT-DQVESL 90
          SEG LA++A   ASGISSPSSP+ DQ+E +
Sbjct: 61 SEGCLAMVA---ASGISSPSSPSMDQIEGV 87

[Close]

BLAST of MS002372 vs. NCBI nr
Match: XP_008336929.1 (uncharacterized protein LOC103400026 [Malus domestica] >RXH74309.1 hypothetical protein DVH24_029030 [Malus domestica] >TQD93559.1 hypothetical protein C1H46_020830 [Malus baccata])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
          ADGL   VY GCI+ SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8  ADGLFRCVYEGCISGSDIGVERRPYHRNCGCALHNKSRNKQCTHGGPKSKKVSYPLRRAW 67

Query: 62 SEGSLAIMASASASGISSPSSPTDQVESLVG 92
          SEG+LA++ASA +S  SSPSS   Q    VG
Sbjct: 68 SEGNLALVASAGSSVHSSPSSSPAQHNHAVG 98

[Close]

BLAST of MS002372 vs. NCBI nr
Match: KAB2618837.1 (hypothetical protein D8674_014706 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
          ADGL   VY GCI+ SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8  ADGLFRCVYEGCISGSDIGVERRPYHRNCGCALHNKSRNKQCTHGGPKSKKVSYPLRRAW 67

Query: 62 SEGSLAIMASASASGISSPSSPTDQVESLVG 92
          SEG+LA++ASA +S  SSPSS   Q    VG
Sbjct: 68 SEGNLALVASAGSSVHSSPSSSPAQHNHAVG 98

[Close]

BLAST of MS002372 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD  L  VYHGCIA  DA IDRRPYHKNC CALHDR NRRCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASASGISSPSSPT-DQVESLVGSNRR 96
          SEG LA++A+++ASG+SSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESL-GSYKR 95

[Close]

BLAST of MS002372 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.5e-29
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD LL  VY+GCI + DAEIDRRPYHKNC CALHDR N+RCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASASGISSPSSPT-DQVESLVGSNRR 96
          SEG LA++A   ASGISSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLAMVA---ASGISSPSSPSMDQVESL-GSYKR 92

[Close]

BLAST of MS002372 vs. ExPASy TrEMBL
Match: A0A498HUH9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029030 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
          ADGL   VY GCI+ SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8  ADGLFRCVYEGCISGSDIGVERRPYHRNCGCALHNKSRNKQCTHGGPKSKKVSYPLRRAW 67

Query: 62 SEGSLAIMASASASGISSPSSPTDQVESLVG 92
          SEG+LA++ASA +S  SSPSS   Q    VG
Sbjct: 68 SEGNLALVASAGSSVHSSPSSSPAQHNHAVG 98

[Close]

BLAST of MS002372 vs. ExPASy TrEMBL
Match: A0A5N5GUK0 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_014706 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
          ADGL   VY GCI+ SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8  ADGLFRCVYEGCISGSDIGVERRPYHRNCGCALHNKSRNKQCTHGGPKSKKVSYPLRRAW 67

Query: 62 SEGSLAIMASASASGISSPSSPTDQVESLVG 92
          SEG+LA++ASA +S  SSPSS   Q    VG
Sbjct: 68 SEGNLALVASAGSSVHSSPSSSPAQHNHAVG 98

[Close]

BLAST of MS002372 vs. ExPASy TrEMBL
Match: A0A540M4V7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_020830 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
          ADGL   VY GCI+ SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8  ADGLFRCVYEGCISGSDIGVERRPYHRNCGCALHNKSRNKQCTHGGPKSKKVSYPLRRAW 67

Query: 62 SEGSLAIMASASASGISSPSSPTDQVESLVG 92
          SEG+LA++ASA +S  SSPSS   Q    VG
Sbjct: 68 SEGNLALVASAGSSVHSSPSSSPAQHNHAVG 98

[Close]

BLAST of MS002372 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 8.1e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-------NRRCSHAFSKH---NS 61
          ADG+  S++ GCI+  D+ I+RRPYHKNCGCALHD+        N+R   +  +H    S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGSLAIM----ASASASGISSPSS 82
          +S+PIRR+WSEG++  M    +S+S+S + S SS
Sbjct: 63 ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSS 96

[Close]

BLAST of MS002372 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 3  DGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNS---VSYPIRRA 62
          DG+  +++ GCI++ D+ I RRPYHKNCGCALH+R     S    +H     V +PI+R+
Sbjct: 7  DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63 WSEG---SLAIMASASASGISSPSS 82
          WSEG   +L + +S+S+S + S SS
Sbjct: 67 WSEGNSLALHLASSSSSSNLQSLSS 91

The following BLAST results are available for this feature:

BLAST of MS002372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443899.1	2.4e-30	75.00	PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]	[more]
KAG6587850.1	1.6e-29	74.74	hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653037.1	1.5e-27	73.33	hypothetical protein Csa_019637 [Cucumis sativus]	[more]
XP_008336929.1	2.5e-19	57.14	uncharacterized protein LOC103400026 [Malus domestica] >RXH74309.1 hypothetical ...	[more]
KAB2618837.1	2.5e-19	57.14	hypothetical protein D8674_014706 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of MS002372 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9X6	1.2e-30	75.00	uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=...	[more]
A0A0A0LWK0	6.5e-29	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1	[more]
A0A498HUH9	1.2e-19	57.14	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029030 PE=4 SV=1	[more]
A0A5N5GUK0	1.2e-19	57.14	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A540M4V7	1.2e-19	57.14	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_020830 PE=4 SV=1	[more]

BLAST of MS002372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	8.1e-16	45.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	7.6e-14	44.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..87
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002372.1	MS002372.1	mRNA