MS002348 (gene) Bitter gourd (TR) v1

Overview
NameMS002348
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold30: 4302205 .. 4302546 (-)
RNA-Seq ExpressionMS002348
SyntenyMS002348
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCGAGTGCTGAATATGGCAATAATCTCTCGTTTTGGATTCCTGAGCGATCTGCTGTTTTCGAGTCCCAGATATGAAGCTTCCAAACCGGAAATTTTCTCTATTCTGGTATCTAATTTATTCGATAATAATATATTTCCCGGATTTTTGTTCTCTTGCCCCCTTTCCAAAATCATCTTCTTCTTCTTATCTCTGCTTATTTATTTAAGTAGTAGCTAATTAGGGCTTGAATATTGCTTTTCTCAGCACTTGTTTGACGTTGGGAGACAACAGCTTGCTTATTGTTCCCTTCACTTTAGATTAATTATCATCACCACCATTACCACTGTCTGGTTAAGAGGT

mRNA sequence

ACTCGAGTGCTGAATATGGCAATAATCTCTCGTTTTGGATTCCTGAGCGATCTGCTGTTTTCGAGTCCCAGATATGAAGCTTCCAAACCGGAAATTTTCTCTATTCTGCACTTGTTTGACGTTGGGAGACAACAGCTTGCTTATTGTTCCCTTCACTTTAGATTAATTATCATCACCACCATTACCACTGTCTGGTTAAGAGGT

Coding sequence (CDS)

ACTCGAGTGCTGAATATGGCAATAATCTCTCGTTTTGGATTCCTGAGCGATCTGCTGTTTTCGAGTCCCAGATATGAAGCTTCCAAACCGGAAATTTTCTCTATTCTGCACTTGTTTGACGTTGGGAGACAACAGCTTGCTTATTGTTCCCTTCACTTTAGATTAATTATCATCACCACCATTACCACTGTCTGGTTAAGAGGT

Protein sequence

TRVLNMAIISRFGFLSDLLFSSPRYEASKPEIFSILHLFDVGRQQLAYCSLHFRLIIITTITTVWLRG
Homology
BLAST of MS002348 vs. NCBI nr
Match: KAG6587833.1 (hypothetical protein SDJN03_16398, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 45/62 (72.58%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 6  MAIISRFGFLSDLLFSSPRYEASKPEIFSILHLFDVGRQQLAYCSLHFRLIIITTITTVW 65
          MA ISRFG L  L FSSPRY ASKPE F I HL DVGRQQ AY SLHFR  IITT  TV 
Sbjct: 1  MATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIITTTPTVR 60

Query: 66 LR 68
          LR
Sbjct: 61 LR 62

BLAST of MS002348 vs. NCBI nr
Match: KAG7035673.1 (AP2/ERF and B3 domain-containing transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 45/62 (72.58%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 6  MAIISRFGFLSDLLFSSPRYEASKPEIFSILHLFDVGRQQLAYCSLHFRLIIITTITTVW 65
          MA ISRFG L  L FSSPRY ASKPE F I HL DVGRQQ AY SLHFR  IITT  TV 
Sbjct: 1  MATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIITTTPTVR 60

Query: 66 LR 68
          LR
Sbjct: 61 LR 62

BLAST of MS002348 vs. NCBI nr
Match: KAE8653049.1 (hypothetical protein Csa_020128 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 42/63 (66.67%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 6  MAIISRFGFLSDLLFSSPRYEASKPEIFSILHLFDVGRQQLAYCSLHFRLIIITTITTVW 65
          MA ISRFG L  LLFSSPRY  S PE F I HLFDVGRQQ+AY SLHFRL I      V 
Sbjct: 1  MATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIVR 60

Query: 66 LRG 69
           RG
Sbjct: 61 YRG 63

BLAST of MS002348 vs. ExPASy TrEMBL
Match: A0A0A0LW76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269860 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 46/68 (67.65%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1   TRVLNMAIISRFGFLSDLLFSSPRYEASKPEIFSILHLFDVGRQQLAYCSLHFRLIIITT 60
           T+VLNMA ISRFG L  LLFSSPRY  S PE F I HLFDVGRQQ+AY SLHFRL I   
Sbjct: 117 TQVLNMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIA 176

Query: 61  ITTVWLRG 69
              V  RG
Sbjct: 177 TPIVRYRG 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6587833.11.1e-1172.58hypothetical protein SDJN03_16398, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035673.11.1e-1172.58AP2/ERF and B3 domain-containing transcription factor [Cucurbita argyrosperma su... [more]
KAE8653049.13.1e-1166.67hypothetical protein Csa_020128 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW765.5e-1467.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002348.1MS002348.1mRNA