MS002313 (gene) Bitter gourd (TR) v1

Overview
NameMS002313
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L35
Locationscaffold30: 4050266 .. 4052721 (+)
RNA-Seq ExpressionMS002313
SyntenyMS002313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTGCTTCGACGACAGTGTCCTTTGGCCTTAGATTTTCCCCATTGTGCTCTCGCCCATCAGTTCGCGTCTCTCATGGTTCCGTCCGGCTCGCTTCGTCGTTCAACAAGGTGAACTCCTTGAGGCTTGGTTCTTCCCCCAACATTTCCGGGTTCGGAGTCGCTCTCCTTCAGAAGTCATTTCATATTGCTCCCACCTCTCAAGTGCATACTCCTCTCACTGTTGTCGCTGCTAAAGGCTATAAAATGAAAACCCACAAGGTCTCTCGCTGTTTCTCTCCTCCGTATGCTATGAAATCTTTTTGTGTGGTTCAATTCTGGTTGGATTATGATGAAATTTGAAGTTAATTTCAGTCTTCTCGATCGTTTGATTATGTTTAGTTGCATTTTTCAATCGAATTGCTGCAAGTTTCGACAATTGCAAATTGAATTTAAGATACCCTTAAAAGTACCCAATTATAGACGCCTAATGAAAGGGTTACTATTATTTCTATATCTTAAGCATTCTGCTGGCCTTCTGGAATTTTCTTATATTTGCTTTTGATTTAATTGTTTGGTGTTACTGGATAGGCTTCGGCCAAGCGATTCAGAGTGACGGGTCGCGGGAAGATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAATACAAAGAGGAAATTACGGCTTTCCAAAATGGTATGTCCTCTTTGATTCTTTTTGTATTTGTGATTATGTATCTGTATGCTGCATTTCAAAACTTGGACCCTTGAATTTGTTTGGGAGAAGTATTATATAAATGGATCGAAGTTTAGCCAATGCAGCCACTGTTTCCAATCAGTATAATTCCTCGACAAGTGATCTATCAATCGTGGATGCTAGTTATCAACCGAGTTTTAGAAAGAATCCTTACGAAATTTGAAAATTTCCTTTATCTCTTGGTTTAATCCTAATCATATTGTAAACTAATGACATGCATTCAACCTCAATCAAGTTCGTTCTGGAAGCATGATCTAATGTGGAACTATTCATCGGTTGTCATAGTTGGTTTAATTCATAATCCCCAGTGCTGTCAGTGTTGGTGATCTTGAGGATTGTTACAGAGACCGTTTAGGAAAGAAGCGTTGTGTTGTTTTGATACTCTTAAGTCTTAAGTGCCCAAGAGATATATCCATGAAACTCTTAAGTACAAAAACACGTTGTAGGAAAGATCTTCAGCATTCCTTTGGTTTTGAATCTTCAGAATTTAGTACACATGGTACTCTGCTGACACTTCCCCGGTTGATTTCTTGTAGTGATTGCTGACTTTTCAGATGTTTATGAGACCATCAAAATGCAGTTCTTTTTGTTCTTTTTGTTCCTTTTGTTTAAATTTGGTTTCCATCAAGATTGTTACTTCCTTCATTAAGTCTTCTGATTTTATTTTTGTCTTTTTCTTGGTGAAATTTCAAACCTTGCCTTGTGTGCACATCAACAATATTCATGCACAAGATTCTTGTGGTTATGGACAGAGCCTTATATAAGGTGATCTGACAGTCCCTCCATCAGTTGATGATAACAAATGAAGGTGAAAATGTGATAAGAAAATGCTTGTAGTGTTGAATGTAACCTTCGTAGAAGAAAATCTGTTGTCAATGAAGTAAACCATCAAGCCTCCAGGGACAGTCCGGTTGGCAAGGACTTTGGCATCTCTTAGTCATACTGGCCTAGAGATGTCAAGTTTAAACCTTCTGGTAAACTTAATATCAAAAGTCCCTGTCCCTCTTTTGAGGCTTTTGTAATTTCATACATCAATGAAATTGTTTCTTTCACTAAAAAATAAAAATATCAAAAGTCCCTGATGTCTCTAAAGTTCTGGCCTTGTGGCAGGTGCGGATGCCTCTGGGTATAGGGGATCAAAACTCCAACTCCCAGTTATTAAAAAAATTATAAATAAAGAAGTAAATGGCTCGTTTGATAACATTTCCGTTTCTTGTTTCTCGTTTCTAATTTTCTTAATAAATCTAAGTATTTTACCACTAACTTTGTTTCTTGTTTCTTCTTTTTTGGGAACATTCTCACAATTGTATAGAAATTTTGGGAACAATCAAAACAAGTTTCTCTTTTCTTGTTCCCATTTCTAATTTGTTCCAAAACATGAATAAAAATATTGTTTTATCATACTTGAATTCTTAGAGGTTGAAACCATACAACACACTTTTCTTCATTAAAAATAAAGAAACAGAAACGTTACCAAACGAGCCCAAAGTAAACCAATCCAGTTTCATAATACCAAAATTCTGGGTTTTGACCTTGTTGTGGAAGGCAATTCGGTAGTTCTCATGCAATCTTAATGCTGTCTGGTTGTGTTTCTGAGCTTGCTTTCGTTTTGTTTTTATGTCTTAACACAGCACCCAGTGAGCCGAAGTGACTATGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCCAAA

mRNA sequence

ATGGCGTCTGCTTCGACGACAGTGTCCTTTGGCCTTAGATTTTCCCCATTGTGCTCTCGCCCATCAGTTCGCGTCTCTCATGGTTCCGTCCGGCTCGCTTCGTCGTTCAACAAGGTGAACTCCTTGAGGCTTGGTTCTTCCCCCAACATTTCCGGGTTCGGAGTCGCTCTCCTTCAGAAGTCATTTCATATTGCTCCCACCTCTCAAGTGCATACTCCTCTCACTGTTGTCGCTGCTAAAGGCTATAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGAGTGACGGGTCGCGGGAAGATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAATACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTATGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCCAAA

Coding sequence (CDS)

ATGGCGTCTGCTTCGACGACAGTGTCCTTTGGCCTTAGATTTTCCCCATTGTGCTCTCGCCCATCAGTTCGCGTCTCTCATGGTTCCGTCCGGCTCGCTTCGTCGTTCAACAAGGTGAACTCCTTGAGGCTTGGTTCTTCCCCCAACATTTCCGGGTTCGGAGTCGCTCTCCTTCAGAAGTCATTTCATATTGCTCCCACCTCTCAAGTGCATACTCCTCTCACTGTTGTCGCTGCTAAAGGCTATAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGAGTGACGGGTCGCGGGAAGATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAATACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTATGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCCAAA

Protein sequence

MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Homology
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BLAST of MS002313 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 5.2e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of MS002313 vs. NCBI nr
Match: KAG7023426.1 (50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 135/152 (88.82%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS T SFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS NIS FGVALLQK
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of MS002313 vs. NCBI nr
Match: XP_022988597.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.9e-62
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS +VSFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS N+S FGVALLQK
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSS-NKAYSLRLSSSHNVSSFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of MS002313 vs. NCBI nr
Match: KAG6589755.1 (50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 6.6e-62
Identity = 134/152 (88.16%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS T SFGL FSPLCSR SVRVS  SVRL SS NK  SLRL SS NIS FGVALLQK
Sbjct: 1   MASASATASFGLMFSPLCSRSSVRVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of MS002313 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 3.3e-61
Identity = 130/152 (85.53%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS  VSFGLRFSPLCSRPS RVSH SV LA SFNKVNSL+L SS NISGFG+  LQK
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  PSHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           +LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 RLRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-32
Identity = 87/130 (66.92%), Postives = 95/130 (73.08%), Query Frame = 0 

Query: 23  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKG 82
           +R S   V L SS +   S  L SS +ISG    L L+ S   +P SQ     TV A KG
Sbjct: 17  LRSSSPKVSLRSSVHFATS--LSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFAHKG 76

Query: 83  YKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGA 142
           YKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGA
Sbjct: 77  YKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGA 136

Query: 143 LPYLKVNRQA 152
           LPYLKVNR+A
Sbjct: 137 LPYLKVNRKA 144

[Close]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-32
Identity = 96/160 (60.00%), Postives = 109/160 (68.12%), Query Frame = 0 

Query: 1   MASASTTVSF---GLRFSPLCSRPSVRVSHGSVRLASSFNK--VNSLRLGSSPNISGFGV 60
           MASA+ T+SF    L  SP    PS R S       + FNK   ++L L SS +IS   V
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  -ALLQKSFHIAPT-SQVHT---PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
             ++ K+  I+   S V T     TV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 151
           HLL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 HLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match: Q3M7I2 (50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of MS002313 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of MS002313 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS +VSFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS N+S FGVALLQK
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSS-NKAYSLRLSSSHNVSSFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of MS002313 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/152 (85.53%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS  VSFGLRFSPLCSRPS RVSH SV LA SFNKVNSL+L SS NISGFG+  LQK
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  PSHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           +LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 RLRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of MS002313 vs. ExPASy TrEMBL
Match: A0A6J1E327 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAS T SFGLRF PLCSR SV VS  SVRL SS NK  SLRL SS NIS FGVALLQK
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of MS002313 vs. ExPASy TrEMBL
Match: A0A6J1EZN8 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 132/152 (86.84%), Postives = 135/152 (88.82%), Query Frame = 0 

Query: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60
           MASAST   FGLRF+PLCSRPS  VS  S+RLA SFNK NSLRL SS NISG GVALLQK
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLA-SFNKANSLRLSSSHNISGVGVALLQK 60

Query: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           S  IAP  QV TPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SCQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of MS002313 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 87/130 (66.92%), Postives = 95/130 (73.08%), Query Frame = 0 

Query: 23  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKG 82
           +R S   V L SS +   S  L SS +ISG    L L+ S   +P SQ     TV A KG
Sbjct: 17  LRSSSPKVSLRSSVHFATS--LSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFAHKG 76

Query: 83  YKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGA 142
           YKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGA
Sbjct: 77  YKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGA 136

Query: 143 LPYLKVNRQA 152
           LPYLKVNR+A
Sbjct: 137 LPYLKVNRKA 144

The following BLAST results are available for this feature:
BLAST of MS002313 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135558.15.2e-75100.0050S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia][more]
KAG7023426.11.3e-6288.8250S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022988597.12.9e-6288.1650S ribosomal protein L35, chloroplastic-like [Cucurbita maxima][more]
KAG6589755.16.6e-6288.1650S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_008443834.13.3e-6185.53PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
BLAST of MS002313 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZ551.5e-3266.9250S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P233265.6e-3260.0050S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
Q8YRL94.6e-1058.7350S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M7I24.6e-1058.7350S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
B2J0D15.1e-0957.1450S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of MS002313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C5502.5e-75100.0050S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
A0A6J1JDG61.4e-6288.1650S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1[more]
A0A1S3B9R81.6e-6185.5350S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
A0A6J1E3272.1e-6187.5050S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=... [more]
A0A6J1EZN81.7e-6086.8450S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=... [more]
BLAST of MS002313 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24090.11.1e-3366.92Ribosomal protein L35 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 116..134
score: 37.84
coord: 83..100
score: 61.11
coord: 101..115
score: 48.25
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 82..144
e-value: 2.9E-23
score: 79.9
IPR001706Ribosomal protein L35, non-mitochondrialPANTHERPTHR3334354S RIBOSOMAL PROTEIN BL35Mcoord: 1..151
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 81..144
score: 15.647649
IPR037229Ribosomal protein L35 superfamilyGENE3D4.10.410.60coord: 83..145
e-value: 3.1E-20
score: 74.5
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 82..144
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 82..138
e-value: 4.1E-20
score: 72.0
NoneNo IPR availablePANTHERPTHR33343:SF350S RIBOSOMAL PROTEIN L35coord: 1..151
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 85..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002313.1MS002313.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome