Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCTAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAGGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAA
mRNA sequence
ACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCTAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAGGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAA
Coding sequence (CDS)
ACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCATCGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCTAGTTCGAGTTCGAGTTCGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAGGCGCTGGATACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAA
Protein sequence
TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGGAGYGGGYGSGGGQGHAK
Homology
BLAST of MS002301 vs. NCBI nr
Match:
XP_022135308.1 (glycine-rich protein 5-like [Momordica charantia])
HSP 1 Score: 160.6 bits (405), Expect = 8.7e-36
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
Query: 1 TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS 60
TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS
Sbjct: 5 TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS 64
Query: 61 GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGGAGYGGGYGSGGG 120
GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGG AGYGGGYGSGGG
Sbjct: 65 GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYGSGGG 124
Query: 121 QGHAK 126
QGHAK
Sbjct: 125 QGHAK 129
BLAST of MS002301 vs. NCBI nr
Match:
XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 125.2 bits (313), Expect = 4.0e-25
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 0
Query: 3 TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 62
++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGS
Sbjct: 3 SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGS 62
Query: 63 GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGGG 122
G SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGGRGGGG+GYGGGYGSG G
Sbjct: 63 G--SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122
Query: 123 QGHAK 126
GH K
Sbjct: 123 GGHGK 125
BLAST of MS002301 vs. NCBI nr
Match:
XP_004146662.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_019748 [Cucumis sativus])
HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 0
Query: 3 TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSG 62
+ KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSG
Sbjct: 3 SLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSGSG 62
Query: 63 SGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGG 122
SGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGGRGG G+GYGGGYGSG
Sbjct: 63 SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGSGY 122
Query: 123 GQGHAK 126
G GH K
Sbjct: 123 GGGHGK 128
BLAST of MS002301 vs. NCBI nr
Match:
XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 122.1 bits (305), Expect = 3.4e-24
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0
Query: 3 TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 62
++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGS GSGS
Sbjct: 3 SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGS----GSGS 62
Query: 63 GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGGG 122
GS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGGRGGGG+GYGGGYGSG G
Sbjct: 63 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122
Query: 123 QGHAK 126
GH K
Sbjct: 123 GGHGK 123
BLAST of MS002301 vs. NCBI nr
Match:
XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 121.3 bits (303), Expect = 5.8e-24
Identity = 104/123 (84.55%), Postives = 112/123 (91.06%), Query Frame = 0
Query: 5 KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGS 64
KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG
Sbjct: 5 KSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSG- 64
Query: 65 SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGGGQG 124
SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGG GGGG+GYGGGYGSG G G
Sbjct: 65 -SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYGGG 124
Query: 125 HAK 126
H K
Sbjct: 125 HGK 125
BLAST of MS002301 vs. ExPASy TrEMBL
Match:
A0A6J1C4G6 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111007303 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 4.2e-36
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
Query: 1 TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS 60
TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS
Sbjct: 5 TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGS 64
Query: 61 GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGGAGYGGGYGSGGG 120
GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGG AGYGGGYGSGGG
Sbjct: 65 GSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGSAGYGGGYGSGGG 124
Query: 121 QGHAK 126
QGHAK
Sbjct: 125 QGHAK 129
BLAST of MS002301 vs. ExPASy TrEMBL
Match:
A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.0e-25
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 0
Query: 3 TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 62
++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGS
Sbjct: 3 SWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGS 62
Query: 63 GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGGG 122
G SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGGRGGGG+GYGGGYGSG G
Sbjct: 63 G--SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 122
Query: 123 QGHAK 126
GH K
Sbjct: 123 GGHGK 125
BLAST of MS002301 vs. ExPASy TrEMBL
Match:
A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 9.7e-25
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 0
Query: 3 TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSG 62
+ KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSG
Sbjct: 3 SLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSGSG 62
Query: 63 SGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGG 122
SGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGGRGG G+GYGGGYGSG
Sbjct: 63 SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGSGY 122
Query: 123 GQGHAK 126
G GH K
Sbjct: 123 GGGHGK 128
BLAST of MS002301 vs. ExPASy TrEMBL
Match:
A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 104/123 (84.55%), Postives = 112/123 (91.06%), Query Frame = 0
Query: 5 KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGS 64
KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG
Sbjct: 5 KSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSG- 64
Query: 65 SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSGGRGGGGAGYGGGYGSGGGQG 124
SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA GSGG GGGG+GYGGGYGSG G G
Sbjct: 65 -SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYGGG 124
Query: 125 HAK 126
H K
Sbjct: 125 HGK 125
BLAST of MS002301 vs. ExPASy TrEMBL
Match:
A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = 0
Query: 3 TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS 62
+ KS +LAALLV S V S+SRVARKDLGLDLGG+G+G+G G+GIGLGGSGSG+G+GSGS
Sbjct: 3 SLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGSGS 62
Query: 63 GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--GRG--GGGAGYGGGYGSG 122
G S SSSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSG GRG GGG+GYGGGYGSG
Sbjct: 63 G--SGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 122
Query: 123 GGQGHAK 126
G GH K
Sbjct: 123 YGGGHGK 127
BLAST of MS002301 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 0
Query: 8 LLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGL-GGSGSGAGAGSGSGSSS 67
LL +++ SLV+ +ESR+ARKDLG+DLGGIG+G+G G+GIGL GGSGSGAGAGSGSGS S
Sbjct: 9 LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68
Query: 68 SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG 103
SSSSSSSSSSSSSSGSG +GS AGS+AGSRAGSG
Sbjct: 69 RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSG 104
BLAST of MS002301 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17
Identity = 90/128 (70.31%), Postives = 99/128 (77.34%), Query Frame = 0
Query: 6 SSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS-GS 65
S +L L++ + V+ SESRVARKDLGLDLGGIG GIG G+GIG GGSGSGAGAGSGS G
Sbjct: 9 SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68
Query: 66 SSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG---------GRG-GGGAGYGGG 123
SSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSG GRG GGG G+GGG
Sbjct: 69 GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022135308.1 | 8.7e-36 | 99.20 | glycine-rich protein 5-like [Momordica charantia] | [more] |
| XP_022921886.1 | 4.0e-25 | 84.80 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
| XP_004146662.1 | 2.0e-24 | 84.13 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypoth... | [more] |
| XP_023515822.1 | 3.4e-24 | 84.00 | counting factor 45-1-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022988598.1 | 5.8e-24 | 84.55 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C4G6 | 4.2e-36 | 99.20 | glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111007303 PE=4 ... | [more] |
| A0A6J1E2L6 | 2.0e-25 | 84.80 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
| A0A0A0LWP0 | 9.7e-25 | 84.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1 | [more] |
| A0A6J1JMR8 | 2.8e-24 | 84.55 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
| A0A5A7T0K2 | 6.5e-21 | 77.95 | Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=... | [more] |
