MS002293 (gene) Bitter gourd (TR) v1

Overview


Name	MS002293
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent RNA helicase
Location	scaffold30: 3897259 .. 3897610 (-)
RNA-Seq Expression	MS002293
Synteny	MS002293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAGAATTGTGAATGGGGGTGCAACAGTAACAGTAAAGAAGACGATAATGAAGCGGAGGAAGAAGAAAGCGATTCACAAAGTGGTGGATTATCTGATTTCGGATTCTTACTTATTCGCTCCCCTGATTTCTTCTAATCCACCCTTCAATTATTCTCGCTCAACTCCAAAAGGTTCTTCCACGTTTCTTCTCCCCAAATTCTTCCTATTTCCTCTTTAATTGTGCCGTTTCGTTCTTGTTAGGGATCGAATTTCGAGAACGCAGAAAAGATAATCGGAGTTTGGTGAAGAAGATTGAGGATTATTTGAAATCCGATTGCTACATGTACGCTCCTCTAATTTTCCCC

mRNA sequence

ATGGCGAAGAGAATTGTGAATGGGGGTGCAACAGTAACAGTAAAGAAGACGATAATGAAGCGGAGGAAGAAGAAAGCGATTCACAAAGTGGTGGATTATCTGATTTCGGATTCTTACTTATTCGCTCCCCTGATTTCTTCTAATCCACCCTTCAATTATTCTCGCTCAACTCCAAAAGGGATCGAATTTCGAGAACGCAGAAAAGATAATCGGAGTTTGGTGAAGAAGATTGAGGATTATTTGAAATCCGATTGCTACATGTACGCTCCTCTAATTTTCCCC

Coding sequence (CDS)

ATGGCGAAGAGAATTGTGAATGGGGGTGCAACAGTAACAGTAAAGAAGACGATAATGAAGCGGAGGAAGAAGAAAGCGATTCACAAAGTGGTGGATTATCTGATTTCGGATTCTTACTTATTCGCTCCCCTGATTTCTTCTAATCCACCCTTCAATTATTCTCGCTCAACTCCAAAAGGGATCGAATTTCGAGAACGCAGAAAAGATAATCGGAGTTTGGTGAAGAAGATTGAGGATTATTTGAAATCCGATTGCTACATGTACGCTCCTCTAATTTTCCCC

Protein sequence

MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

Homology

[Close]

BLAST of MS002293 vs. NCBI nr
Match: XP_022134860.1 (uncharacterized protein LOC111007025 isoform X2 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 94

[Close]

BLAST of MS002293 vs. NCBI nr
Match: XP_022134857.1 (uncharacterized protein LOC111007025 isoform X1 [Momordica charantia] >XP_022134858.1 uncharacterized protein LOC111007025 isoform X1 [Momordica charantia] >XP_022134859.1 uncharacterized protein LOC111007025 isoform X1 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 94

[Close]

BLAST of MS002293 vs. NCBI nr
Match: XP_022134861.1 (uncharacterized protein LOC111007025 isoform X3 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMY 89
          IEFRERRKDNRSLVKKIEDYLKSDCYM+
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMH 88

[Close]

BLAST of MS002293 vs. NCBI nr
Match: XP_022134863.1 (uncharacterized protein LOC111007025 isoform X4 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYM 88
          IEFRERRKDNRSLVKKIEDYLKSDCY+
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYI 87

[Close]

BLAST of MS002293 vs. NCBI nr
Match: XP_008443803.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRST 60
          MAK++V+   GG     KK ++KR KKK IHKV+DYL+SD YLFAPL+ S  P N S  T
Sbjct: 1  MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61 P-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          P +GIE R R KDNRSLVKK +DYLKSDCYMYA L+ P
Sbjct: 61 PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTP 98

[Close]

BLAST of MS002293 vs. ExPASy TrEMBL
Match: A0A6J1C0T7 (uncharacterized protein LOC111007025 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007025 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 94

[Close]

BLAST of MS002293 vs. ExPASy TrEMBL
Match: A0A6J1BZI2 (uncharacterized protein LOC111007025 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007025 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 94

[Close]

BLAST of MS002293 vs. ExPASy TrEMBL
Match: A0A6J1BYY8 (uncharacterized protein LOC111007025 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007025 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMY 89
          IEFRERRKDNRSLVKKIEDYLKSDCYM+
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYMH 88

[Close]

BLAST of MS002293 vs. ExPASy TrEMBL
Match: A0A6J1C374 (uncharacterized protein LOC111007025 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007025 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60
          MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG
Sbjct: 1  MAKRIVNGGATVTVKKTIMKRRKKKTIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKG 60

Query: 61 IEFRERRKDNRSLVKKIEDYLKSDCYM 88
          IEFRERRKDNRSLVKKIEDYLKSDCY+
Sbjct: 61 IEFRERRKDNRSLVKKIEDYLKSDCYI 87

[Close]

BLAST of MS002293 vs. ExPASy TrEMBL
Match: A0A5D3B7P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00120 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.9e-22
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRST 60
          MAK++V+   GG     KK ++KR KKK IHKV+DYL+SD YLFAPL+ S  P N S  T
Sbjct: 1  MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61 P-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP 95
          P +GIE R R KDNRSLVKK +DYLKSDCYMYA L+ P
Sbjct: 61 PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTP 98

[Close]

BLAST of MS002293 vs. TAIR 10
Match: AT5G57790.1 (unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 10  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP----------- 69
           +++  +K + +++ ++ +  +V YL SD+YLFAPL S+ PP      TP           
Sbjct: 7   SSLGARKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVD 66

Query: 70  ----KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI 93
               +G E    E+    R + +K+++YLKSDCYMY+P+I
Sbjct: 67  DISMEGFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMI 106

[Close]

BLAST of MS002293 vs. TAIR 10
Match: AT5G57790.2 (unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 10  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP----------- 69
           +++  +K + +++ ++ +  +V YL SD+YLFAPL S+ PP      TP           
Sbjct: 7   SSLGARKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVD 66

Query: 70  ----KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI 93
               +G E    E+    R + +K+++YLKSDCYMY+P+I
Sbjct: 67  DISMEGFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMI 106

The following BLAST results are available for this feature:

BLAST of MS002293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134860.1	1.1e-43	98.94	uncharacterized protein LOC111007025 isoform X2 [Momordica charantia]	[more]
XP_022134857.1	1.1e-43	98.94	uncharacterized protein LOC111007025 isoform X1 [Momordica charantia] >XP_022134...	[more]
XP_022134861.1	2.2e-39	97.73	uncharacterized protein LOC111007025 isoform X3 [Momordica charantia]	[more]
XP_022134863.1	1.1e-38	97.70	uncharacterized protein LOC111007025 isoform X4 [Momordica charantia]	[more]
XP_008443803.1	2.0e-21	62.24	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]

BLAST of MS002293 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0T7	5.4e-44	98.94	uncharacterized protein LOC111007025 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BZI2	5.4e-44	98.94	uncharacterized protein LOC111007025 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BYY8	1.1e-39	97.73	uncharacterized protein LOC111007025 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C374	5.2e-39	97.70	uncharacterized protein LOC111007025 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3B7P7	9.9e-22	62.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS002293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57790.1	1.1e-09	33.00	unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]
AT5G57790.2	1.1e-09	33.00	unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36811	OS08G0444440 PROTEIN	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002293.1	MS002293.1	mRNA