MS002276 (gene) Bitter gourd (TR) v1

Overview


Name	MS002276
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein E
Location	scaffold30: 3779303 .. 3782971 (-)
RNA-Seq Expression	MS002276
Synteny	MS002276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATATCTATTCATCGTTCTTCCTTCGTTGACTTTACTTTGGAGCTGGATTTCTGCGCTTTACTGATGGTTTCCCTATCTGTCCTTTTTTTTTTTTTGGTTTGTTCCCGGTCCTACTTTGGAACCAGAACTTGATATTCAGATTTCTTCAAAGTGTAAGAACTTACTTTTCCGAATTAATTATTTTACCTGTCTGTTCCTAGCCTAATTTGGTTTTCTGATTCTTGTTTGAAACCAATGCAGAAAGCCCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATCGAAGGTCGAATTATTGTAAGATTTTATTTATTGTTGGTTTATATATATTTGTATTAGCAATTAATGTACCTGGGAATGAAGCCTCTGTTTGTGTATATGTTGATCTTCTGATTTTAGTTAAATGAGTTTACAGCATTCTAGTTTTATGCTTATGATTGATAGACACTCCGACTTACTCTAATCTGCTCCTTACTGAAATTATATGATTTGAGCACAGGACGTAACTGAATGTGTCGGAAAGTACTTACGTGCTCTGGCTTAGGACATAAGATTCTACTTCACATTATCCCTTTCAAATTTCTAGAGTTGAAACAAATTCTGGGTGTGTAGGCAGTTTAATTGTTGCAAGTTGAATTTGAACCTACTTGAAATCCATGTTCCAAAATAAATTGGCATGCCTTCTAGATTGCGCGTTGGTATTTTGTTTGCATTTTAGAGTGCCTTTAAGGGTTGTGCAGAAACATGCTGAAAACTGGGCGTCTCTGGGACATAGTTTGAAGTTGCTGCTTATATAGGTTGTCACCCACACTCCCTCAAGGAATAGGAATGGACCATAGTACATAGTTGTAATTTCTCTATTTCTTGTGTAGCTAGTGAAAGTTTTTAGGGTCTCAGTTTTACTTTTAGAGATACAAAGTCTCTAATGGAAATATTTTTGCAATCAGAATGGCCCTTCAATAGTCTTCATTATCTTTTGAACTTTTAGTAGCTTAAATTTAAGGTAAACTATGGTAGCCCATCTTTCCTTTAAGAATTAGCCAGTGGTGGAAATAGTTGTTGTATTTGTTCTGTTATTTACTATGGTGGAGGTGGCCACCAGGCACCAATTTTAGAGTTCGAATCTGATGGGCCTTAGCTGATGTATAGAACACAGTGTTATATCGGTATTCTCTCCAATGTGACCAAACCATTTGGGTCGAAACTCTAGTTTCCCTAAAGTGAACTAGTCAAGTACTTCTGAGATTTGCGGTATTTCTCTTAAGAGGTCTTCTAATATGGTTAGATCAGTTAACTAAGTATATGGATTGATGTGGTCAAGGTCTCATGGCTTCTTCATCATCTTTTTAGAACTCTACCCTTTGCTTGTTGCATTATTTATGCCCTTCTATTTTAAGCATGGCCCACTTCCATTTGGTCAGTTTTGGGGTTCATTAGCAGCTTGACTATTTCATATTCCCTATAACACAAACAAAAGATTTCCATCTGTCACTACCACCATGAAGTCACTGCCACCGTGAAGTCAGCTTATTCTTCTATCGAAGATTGTGCCTTGTTCTACACTCGATTAAGCTTGATTCATATTTCTTTTGTGCTGCATTCAACCTGTCAATATATGACGTATGGCGATAAATTATACACAAATGATATCCTCTGAGTTTTTAGATGAATTACAAAAATTGTTAACTAATTTTTTTGGGGTTCATTATTTCTCATATGAACACAGTGAATCTTTAGTCTCTTTACTTCTGATTTTTTTTTCCTTTTTTTAATCTTTGATGTGCTAATGGTGTGATACTTTTTGCTATATTGAGTCATGACTGAACACAATTGAATGTAGTTGCATATTTCATGTCCTTTTTGTCTGTTCTTGTTTTTGCTAATTATTGCCATGTAATAGCTTTTAAATGCAATTTTATTAGATGATACTTTTTGTGTATCTCTTGCTTCTAAGCTAGTAAATTACTGCGAAAAAGGGCCTTGAGGTATCCCAGAACCCTTACGAAGAGTTCGTAGCTTCTTGAGGCAGAAGAAATAGCACCAGCAGCAGAGTGAGAGAGTAGAAGGCTAGAAGCCTAGGTTGCTCCTGTGGCCGACCCTACTTAGCCGCCTTTCTCCTTTATTAGTGTATAAGGGTGTCACTTGGTTAGCATTTCTATCATCCATGACTTGGTATAGAGTCCGTGTAGTTGTCGGCCTTCCCACCAGAAGGCGTGGTAGGGAGCACACTTGACAGGAGATAGACATAGGCGGTAGAGAAAGAAAGAGGCAAGCCCCTAATTCAAAATATAGCACTCTAGACATATCCCGCCTCTTCCTTCCTTGCCCGCATCAGAATATGTAGTGGTTGCGGCGCGTCAAGGCACTTCTTCGATGGTCCCCGTCCGCCCGGCCTGCTGGCCCGCTCTAAAGAATGAATGGGCCAGCGAGCCTCAAGGACAAGGGGGCGGGCACTACTAACCAAGCGAAGCCTAGTTCTCGCAGATAGGCAGCCGAGTTTTTCATTCCTTAGCTTGGTGCAAAAGGCTTCTCGCAGGTCCTTTTTCAAGCCCATCTCGAATATGATGCAGTATGGTACTCGTGACCCTGCTGGTGGCTGCCACCGCCTCACAGATTCAGGGCGCCGCCCTCCTTCTTAGAACCCATTGAGGGGGGCCTCGGCCTGGGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTATAAATCTGTTGAAGTTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTTGTTGTGTAGCCATAGAGTTCACGCTAATCTAGCATACCTTGTCTAGATCACTTTCTACCTATAAATCTCATTCTCTTGTTTCTCTGAGCAAATAAGGGAGTAAATACGCTGCATAGATTGTGATGTAATTTCAACATCCTGCTTGTCTTTTCATTCACTAGATCCACTTGCTAGGACTGTAATTTTCATCTTGAATGAGTACCTTCCTTGGCCTTTGGGTCTGGCTCCTTCCTTTCTTTTGTAATTTCATACCATCTATGACATTGTTTCTTTAAAAAAAATATTGTTGCTTGGACGTCTAATTTTTCCTATAAACTAACATTATATAATTTGTAATTTTTCAACTATTACCCGATATGCCTCAGCTTCTGTAATTTACCTTTTTTTTTTTCTTTTTTTTGGATAGTAAACAAATTTCACTGCTTCTGTAATTTACATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGTGAGAAAATGTGGTTTTCTCATTCCATTGTTTTTTTTTTGTAATTACGTGTGTTTCTTTTGGCTGACTAATTAATTTTTATGATTATAACTTATAAGGGAGGTAGTTGGAGGAATCTGTTTCTTTTAACACGGTGTTATCTTCAAATTAATATTATTTCTTGACCGTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGTCTTCTTCCCCCCTCCTTTGCTGTTGTCTGCCTCATCTCTACTTCAATAACAATATCTGAAATGCCTTTTTTTTCTCCTTCAGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

mRNA sequence

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATATCTATTCATCGTTCTTCCTTCAAAGCCCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATCGAAGGTCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

Coding sequence (CDS)

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATATCTATTCATCGTTCTTCCTTCAAAGCCCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATCGAAGGTCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

Protein sequence

MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

Homology

[Close]

BLAST of MS002276 vs. NCBI nr
Match: XP_022135003.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972120.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023529379.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6587777.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-30
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. NCBI nr
Match: XP_020227736.1 (small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 77/87 (88.51%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. NCBI nr
Match: KYP57426.1 (Small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 77/87 (88.51%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. NCBI nr
Match: XP_003597961.1 (small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nuclear ribonucleoprotein E [Medicago truncatula] >XP_019463643.1 PREDICTED: small nuclear ribonucleoprotein E-like [Lupinus angustifolius] >AES68212.1 small nuclear ribonucleoprotein [Medicago truncatula] >AES98765.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK37227.1 unknown [Medicago truncatula] >RHN56601.1 putative small nuclear ribonucleoprotein E [Medicago truncatula] >RHN76562.1 putative small nuclear ribonucleoprotein E [Medicago truncatula])

HSP 1 Score: 140.2 bits (352), Expect = 8.5e-30
Identity = 76/87 (87.36%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VN+KKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNVKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. NCBI nr
Match: RZB71613.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 76/87 (87.36%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKS+KTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSRKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 5  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIK 64
          KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 9  KVQKVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK 68

Query: 65 KKSKKTLGMILLKGDNITLMMN 87
           KS+K LG I+LKGDNITL+ +
Sbjct: 69 TKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MS002276 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 5  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIK 64
          KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 9  KVQKVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK 68

Query: 65 KKSKKTLGMILLKGDNITLMMN 87
           KS+K LG I+LKGDNITL+ +
Sbjct: 69 TKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MS002276 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 5  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIK 64
          KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 9  KVQKVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK 68

Query: 65 KKSKKTLGMILLKGDNITLMMN 87
           KS+K LG I+LKGDNITL+ +
Sbjct: 69 TKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MS002276 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 5  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIK 64
          KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 9  KVQKVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK 68

Query: 65 KKSKKTLGMILLKGDNITLMMN 87
           KS+K LG I+LKGDNITL+ +
Sbjct: 69 TKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MS002276 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 5  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIK 64
          KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 9  KVQKVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK 68

Query: 65 KKSKKTLGMILLKGDNITLMMN 87
           KS+K LG I+LKGDNITL+ +
Sbjct: 69 TKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MS002276 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. ExPASy TrEMBL
Match: A0A6J1EQZ2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. ExPASy TrEMBL
Match: A0A151SRH5 (Small nuclear ribonucleoprotein E OS=Cajanus cajan OX=3821 GN=KK1_003688 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 77/87 (88.51%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VNIKKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. ExPASy TrEMBL
Match: G7IMA2 (Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.1e-30
Identity = 76/87 (87.36%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          VN+KKKSKKTLG ILLKGDNITLMMNT
Sbjct: 61 VNVKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-30
Identity = 71/87 (81.61%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMNT 88
          V+IKK ++K LG ILLKGDNITLMMNT
Sbjct: 61 VSIKKNTRKPLGRILLKGDNITLMMNT 86

[Close]

BLAST of MS002276 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-30
Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE 60

Query: 61 VNIKKKSKKTLGMILLKGDNITLMMN 87
          V+IKKK++K LG ILLKGDNITLMMN
Sbjct: 61 VSIKKKTRKPLGRILLKGDNITLMMN 85

[Close]

BLAST of MS002276 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-23
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 60
          MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEE
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQS-KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE 60

Query: 61 VNIKKKSKKTLG 73
          V+IKK ++K LG
Sbjct: 61 VSIKKNTRKPLG 71

[Close]

BLAST of MS002276 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 29 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--LGMILLKGDNITLMM 86
          +IW+  + D  + G + GFD Y+N+VL+D  E  I  + ++   L  ILL G+NI +++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILV 79

[Close]

BLAST of MS002276 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 41.6 bits (96), Expect = 3.8e-04
Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 23 SFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNIKKKSKKTL 82
          +++ R+ I    Q   ++ G+ + FD +MNLVL D EE           +N +++ ++TL
Sbjct: 14 NYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTL 73

Query: 83 GMILLKGDNITLM 85
          G++LL+G+ +  M
Sbjct: 74 GLVLLRGEEVISM 82

The following BLAST results are available for this feature:

BLAST of MS002276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135003.1	5.0e-30	89.66	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 sma...	[more]
XP_020227736.1	6.5e-30	88.51	small nuclear ribonucleoprotein E [Cajanus cajan]	[more]
KYP57426.1	6.5e-30	88.51	Small nuclear ribonucleoprotein E [Cajanus cajan]	[more]
XP_003597961.1	8.5e-30	87.36	small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nu...	[more]
RZB71613.1	1.4e-29	87.36	Small nuclear ribonucleoprotein E [Glycine soja]	[more]

BLAST of MS002276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	9.7e-21	62.20	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	9.7e-21	62.20	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	9.7e-21	62.20	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	9.7e-21	62.20	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	9.7e-21	62.20	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of MS002276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7N4	2.4e-30	89.66	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE...	[more]
A0A6J1C3K6	2.4e-30	89.66	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114...	[more]
A0A6J1EQZ2	2.4e-30	89.66	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 ...	[more]
A0A151SRH5	3.1e-30	88.51	Small nuclear ribonucleoprotein E OS=Cajanus cajan OX=3821 GN=KK1_003688 PE=3 SV...	[more]
G7IMA2	4.1e-30	87.36	Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=...	[more]

BLAST of MS002276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18740.1	1.8e-30	81.61	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	1.8e-30	82.56	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	4.8e-23	79.17	Small nuclear ribonucleoprotein family protein	[more]
AT5G48870.1	1.7e-04	35.59	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.1	3.8e-04	30.14	small nuclear ribonucleoprotein associated protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 22..86 e-value: 3.1E-14 score: 63.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 29..84 e-value: 3.4E-17 score: 61.9
None	No IPR available	GENE3D	2.30.30.100		coord: 1..87 e-value: 3.8E-34 score: 118.4
None	No IPR available	PANTHER	PTHR11193:SF10	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..86 e-value: 9.96069E-40 score: 124.203
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 25..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002276.1	MS002276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex