MS002250 (gene) Bitter gourd (TR) v1

Overview
NameMS002250
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF761 domain-containing protein
Locationscaffold30: 3616308 .. 3616676 (-)
RNA-Seq ExpressionMS002250
SyntenyMS002250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGGAGTAGCTTGCTGGGAAGGCTGCGGAAGGCGGTGAAGAAGGTGAGATTTATGATAAACTTCAGCATCCAAAGCTGGCGGTTGGCGGCCATGATGGGGCGGACTTCGTCGAGAAATCTACGGCTGAGCTTCAACGAACGGCCAGGATTGAAGGCCTGCACCGAAGATATTACGGAATCATCTCAACACTACTCTCCAGGGCTGCAGAGAACTGCCAGCTATGCTTCCGAAGATGACGTGGACAAGCGGGCGGATATGTTTATAGCTAATTTCTACCGGCAGCTTCAGATCGAGCGCCAGGTGTCGCTGGAGCTTCAGTACTGCCGTGGGAATAGCTTCAACAACCACCTCCTAATTTCTCCT

mRNA sequence

ATGGCGGGGAGTAGCTTGCTGGGAAGGCTGCGGAAGGCGGTGAAGAAGGTGAGATTTATGATAAACTTCAGCATCCAAAGCTGGCGGTTGGCGGCCATGATGGGGCGGACTTCGTCGAGAAATCTACGGCTGAGCTTCAACGAACGGCCAGGATTGAAGGCCTGCACCGAAGATATTACGGAATCATCTCAACACTACTCTCCAGGGCTGCAGAGAACTGCCAGCTATGCTTCCGAAGATGACGTGGACAAGCGGGCGGATATGTTTATAGCTAATTTCTACCGGCAGCTTCAGATCGAGCGCCAGGTGTCGCTGGAGCTTCAGTACTGCCGTGGGAATAGCTTCAACAACCACCTCCTAATTTCTCCT

Coding sequence (CDS)

ATGGCGGGGAGTAGCTTGCTGGGAAGGCTGCGGAAGGCGGTGAAGAAGGTGAGATTTATGATAAACTTCAGCATCCAAAGCTGGCGGTTGGCGGCCATGATGGGGCGGACTTCGTCGAGAAATCTACGGCTGAGCTTCAACGAACGGCCAGGATTGAAGGCCTGCACCGAAGATATTACGGAATCATCTCAACACTACTCTCCAGGGCTGCAGAGAACTGCCAGCTATGCTTCCGAAGATGACGTGGACAAGCGGGCGGATATGTTTATAGCTAATTTCTACCGGCAGCTTCAGATCGAGCGCCAGGTGTCGCTGGAGCTTCAGTACTGCCGTGGGAATAGCTTCAACAACCACCTCCTAATTTCTCCT

Protein sequence

MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDITESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLLISP
Homology
BLAST of MS002250 vs. NCBI nr
Match: XP_022135293.1 (uncharacterized protein LOC111007290 [Momordica charantia])

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MAGSSLLGRLRKAV+KVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60

Query: 61  ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL 120
           ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL
Sbjct: 61  ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL 120

Query: 121 ISP 124
           ISP
Sbjct: 121 ISP 123

BLAST of MS002250 vs. NCBI nr
Match: XP_038879799.1 (uncharacterized protein LOC120071543 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-45
Identity = 102/124 (82.26%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTED-I 60
           MA SS+L RLRKAVKK++FM+NFSIQSWRLAAM+GRTSSRNLRLSFNERPGL ACTED I
Sbjct: 1   MAASSVLNRLRKAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLMACTEDII 60

Query: 61  TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHL 120
            E S   S GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLELQYCRGNSFN  L
Sbjct: 61  EEESVSSSRGLQRTTSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSFNK-L 120

Query: 121 LISP 124
           +ISP
Sbjct: 121 IISP 123

BLAST of MS002250 vs. NCBI nr
Match: XP_023515447.1 (uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MA +SLLGRLRKAV+K++FM+ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAATSLLGRLRKAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSQH---YSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNN 120
           ESS+H    S GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLEL+YCRGNSF  
Sbjct: 61  ESSEHSNSSSRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGNSF-K 120

Query: 121 HLLISP 124
            L++SP
Sbjct: 121 QLIVSP 125

BLAST of MS002250 vs. NCBI nr
Match: XP_022987374.1 (uncharacterized protein LOC111484948 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MA +SLLGRLR AV+K++FM+ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSQHYSP----GLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 120
           ESS+H +     GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLELQYCRGNS +
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNS-S 120

Query: 121 NHLLISP 124
             L++SP
Sbjct: 121 KQLIVSP 126

BLAST of MS002250 vs. NCBI nr
Match: XP_022921804.1 (uncharacterized protein LOC111429947 [Cucurbita moschata])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 93/127 (73.23%), Postives = 110/127 (86.61%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MA +SLLGRLRKAV+K++F++ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSQHYSP----GLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 120
           ESS+H +     GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLEL+YCRG+S +
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSS-S 120

Query: 121 NHLLISP 124
             L++SP
Sbjct: 121 KQLIVSP 126

BLAST of MS002250 vs. ExPASy TrEMBL
Match: A0A6J1C4F5 (uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007290 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.3e-61
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MAGSSLLGRLRKAV+KVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60

Query: 61  ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL 120
           ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL
Sbjct: 61  ESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHLL 120

Query: 121 ISP 124
           ISP
Sbjct: 121 ISP 123

BLAST of MS002250 vs. ExPASy TrEMBL
Match: A0A6J1JIQ4 (uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.8e-43
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MA +SLLGRLR AV+K++FM+ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSQHYSP----GLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 120
           ESS+H +     GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLELQYCRGNS +
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNS-S 120

Query: 121 NHLLISP 124
             L++SP
Sbjct: 121 KQLIVSP 126

BLAST of MS002250 vs. ExPASy TrEMBL
Match: A0A6J1E1K7 (uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC111429947 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.6e-42
Identity = 93/127 (73.23%), Postives = 110/127 (86.61%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60
           MA +SLLGRLRKAV+K++F++ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSQHYSP----GLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 120
           ESS+H +     GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLEL+YCRG+S +
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSS-S 120

Query: 121 NHLLISP 124
             L++SP
Sbjct: 121 KQLIVSP 126

BLAST of MS002250 vs. ExPASy TrEMBL
Match: A0A0A0LUK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-42
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDI- 60
           M   SLLGRLRKAVKK+RFM+NFSIQ WRLAAM+GRTSSRNLRLSF ERPGLKAC+EDI 
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  ---TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 117
               +S    S GLQRT SYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

BLAST of MS002250 vs. ExPASy TrEMBL
Match: A0A5D3CK96 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00610 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = 0

Query: 1   MAGSSLLGRLRKAVKKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLK-ACTEDI 60
           M   SLLGRLRKAVKK++FM+NFSIQ WRLAAM+GRTSSRNLRLSFNERPGLK AC+EDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  ---TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 117
               E     S GLQRT SYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCR NSF+
Sbjct: 61  IMEEEPVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSFD 120

BLAST of MS002250 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 0

Query: 5   SLLGRLRKAVKKVRFMINFSIQS-WRLAAMMG-RTSSRNLRLSFNERPGLKAC-TEDITE 64
           SLL RLR+AV KV+F+++F I S W L  M+G  +SS +LRLSFN+RPGL A  TE+  +
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTENEPD 67

Query: 65  SSQHYSPGLQRTASY--ASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGN--SFN 117
           S+      L RT SY  +S++D+D +A+MFIANFYRQL+IERQ+SLEL+YC+GN  SFN
Sbjct: 68  STGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFN 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022135293.11.7e-6099.19uncharacterized protein LOC111007290 [Momordica charantia][more]
XP_038879799.13.5e-4582.26uncharacterized protein LOC120071543 [Benincasa hispida][more]
XP_023515447.11.5e-4376.98uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo][more]
XP_022987374.11.6e-4274.80uncharacterized protein LOC111484948 [Cucurbita maxima][more]
XP_022921804.11.4e-4173.23uncharacterized protein LOC111429947 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C4F58.3e-6199.19uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1JIQ47.8e-4374.80uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948... [more]
A0A6J1E1K76.6e-4273.23uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC1114299... [more]
A0A0A0LUK48.6e-4278.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1[more]
A0A5D3CK961.1e-3977.50DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
AT5G57510.11.3e-2657.14unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 79..110
e-value: 1.6E-11
score: 43.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 1..118
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002250.1MS002250.1mRNA