MS002225 (gene) Bitter gourd (TR) v1

Overview


Name	MS002225
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Location	scaffold30: 3357614 .. 3357764 (-)
RNA-Seq Expression	MS002225
Synteny	MS002225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTAAAAATTACCAACTTGACCCTTAGCCCAAGCGTTATATTTGGTTATTTACTAAAATCTCCTTTTAGAGGAGAAGGATGGATGGTTAGTGTAGACGATTTGGAAGATATAGTTTGGGCATGTATGGTTAGGTTCCATTTGCATACTT

mRNA sequence

TATTTAAAAATTACCAACTTGACCCTTAGCCCAAGCGTTATATTTGGTTATTTACTAAAATCTCCTTTTAGAGGAGAAGGATGGATGGTTAGTGTAGACGATTTGGAAGATATAGTTGGGCATGTATGGTTAGGTTCCATTTGCATACTT

Coding sequence (CDS)

TATTTAAAAATTACCAACTTGACCCTTAGCCCAAGCGTTATATTTGGTTATTTACTAAAATCTCCTTTTAGAGGAGAAGGATGGATGGTTAGTGTAGACGATTTGGAAGATATAGTTGGGCATGTATGGTTAGGTTCCATTTGCATACTT

Protein sequence

YLKITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIVGHVWLGSICIL

Homology

[Close]

BLAST of MS002225 vs. NCBI nr
Match: ABR14704.1 (photosystem II CP43 protein, partial [Hanguana malayana])

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. NCBI nr
Match: YP_009751902.1 (photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43 kDa protein [Cyclanthera pedata])

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 186 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 234

[Close]

BLAST of MS002225 vs. NCBI nr
Match: KAB2017079.1 (hypothetical protein ES319_D08G135500v1 [Gossypium barbadense])

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI 50
           KITNLTLSPSVIFGYLLKSPFRGEGW+VSVDDL+DI+ GHVWLGSICI
Sbjct: 132 KITNLTLSPSVIFGYLLKSPFRGEGWIVSVDDLDDIIGGHVWLGSICI 179

[Close]

BLAST of MS002225 vs. NCBI nr
Match: XP_022975445.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 534 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 582

[Close]

BLAST of MS002225 vs. NCBI nr
Match: QUB02840.1 (photosystem II CP43 chlorophyll apoprotein [Weldenia candida])

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.1e-19
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy Swiss-Prot
Match: A8SE99 (Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum OX=4428 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Sbjct: 186 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

[Close]

BLAST of MS002225 vs. ExPASy Swiss-Prot
Match: A6MMK3 (Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy TrEMBL
Match: A0A218KG40 (Photosystem II CP43 reaction center protein OS=Cucumis sativus var. hardwickii OX=319220 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 186 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 234

[Close]

BLAST of MS002225 vs. ExPASy TrEMBL
Match: A0A6M3RWB3 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy TrEMBL
Match: A0A1X9Q1T4 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy TrEMBL
Match: A0A1S4EU06 (Photosystem II CP43 reaction center protein OS=Cucumis melo OX=3656 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. ExPASy TrEMBL
Match: A0A249RZ79 (Photosystem II CP43 reaction center protein OS=Cucumis melo var. cantalupensis OX=3658 GN=psbC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL 51
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICIL 246

[Close]

BLAST of MS002225 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 93.2 bits (230), Expect = 6.3e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 3   KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI 50
           KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICI
Sbjct: 198 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICI 245

The following BLAST results are available for this feature:

BLAST of MS002225 vs. NCBI nr


Match Name	E-value	Identity	Description
ABR14704.1	2.3e-16	93.88	photosystem II CP43 protein, partial [Hanguana malayana]	[more]
YP_009751902.1	2.3e-16	93.88	photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43...	[more]
KAB2017079.1	2.3e-16	91.67	hypothetical protein ES319_D08G135500v1 [Gossypium barbadense]	[more]
XP_022975445.1	2.3e-16	93.88	LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima]	[more]
QUB02840.1	2.3e-16	93.88	photosystem II CP43 chlorophyll apoprotein [Weldenia candida]	[more]

BLAST of MS002225 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	3.1e-19	93.88	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
A9LYI1	4.0e-19	91.84	Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V538	4.0e-19	91.84	Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE...	[more]
A8SE99	4.0e-19	91.84	Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum OX=4428 GN...	[more]
A6MMK3	4.0e-19	91.84	Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]

BLAST of MS002225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG40	1.1e-16	93.88	Photosystem II CP43 reaction center protein OS=Cucumis sativus var. hardwickii O...	[more]
A0A6M3RWB3	1.1e-16	93.88	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
A0A1X9Q1T4	1.1e-16	93.88	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
A0A1S4EU06	1.1e-16	93.88	Photosystem II CP43 reaction center protein OS=Cucumis melo OX=3656 GN=psbC PE=3...	[more]
A0A249RZ79	1.1e-16	93.88	Photosystem II CP43 reaction center protein OS=Cucumis melo var. cantalupensis O...	[more]

BLAST of MS002225 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	6.3e-20	91.67	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33180:SF21	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 3..50
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 3..50
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 3..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002225.1	MS002225.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding