MS002222 (gene) Bitter gourd (TR) v1

Overview


Name	MS002222
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cadherin-4 like
Location	scaffold30: 3336034 .. 3338585 (+)
RNA-Seq Expression	MS002222
Synteny	MS002222

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGAATTCTGGCTCTCTCCCAATCCCTTCTCTGCTCCAAGTTTCAATCTTCCCCCTTCAGATTGTCGTTGTTGATTCCTTCTTCCTTTGCCCTGGGTCATCGGAACCGATCTACGCGTTCTGGCAAGGTCAAATTCATCGAGATTGACCTCGAATCGTCCTCTTTCGGCGGTGATTCCGATGTTCTAGCGATCAGGAAGCTGGACGACTTTGTGCAGAAGATTATTGTCGAGCGATCGACTCCTGATTGGATTCCCTTTGTACCGGGTTCGTCTTTTTGGGTTCCTCCTCGCCGTAACAAGCCACGCAAGGTGGTCGACCTGTTCGATAAATTGGTTGAACCACTCACCAAAGAGGAGTCTCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGTTTAGAATTTTTCGCTAAAGGTATATTTAAATTGTGTGTATATATATATATTTTTTACCGATCTCGTCGTGTTATTCGATTGATGTTTATTTGGCTGTTGATTTATGCGGAAAAGGATAATTGAAAATGTGGTTTGGCCTTATTAGTCCTGTCCCTTGTGCTATAATTATGTGAACAGACTGAGAAGAGTTTGCAGTCTTGGAAATTTCGGTTATTTGGCCTTATTTCATAGGGATGGAATTTTTGGAAGTTCTTCTGAATTGAAGTTGTAAATCGGCCATCTTTTAGTTCAAATGGATAATGCTACTGCTTCATAGGTTGCATATGGGGTGATGCTTGTAATGGCTTTATTCGAGGGGTTCAGCCGTTCTAATTCGAATGACACCAATTAGGGAGCAGGTTTCATGTTCTCTTCTTTTAGGGTTTACAATGCAGTAGCTCAGTTGGCCATAAAAGCGTTGGTTGTTTTGTTTATGTCGAGGAGTTGTTCTTGTGTTTTATAGCTTCTGAAACTGCGCTGTAGAAGTCTACGCCTACTATGGGGTTTCGTTTATTTATTAAAAGTTTCTGTTCATGAATGAGTTTTCACGGAGTATTATTCAAACAAGTACTTAATAGAATTCCAGGAAAAGGAAGTTAGTATCATGACAAGACCTAAACCACAATGGTTAAGTGTATGTGATCAGTAATATAACGTTTAAAAGCCCCTTTAAAATGTATTATCGTACTGTCTTTACATTTTAGCTGAACTTGTAAATCAGAATCATGCTCTGCAGTTCCACTTGGATGTAAAATATGCAAGGGTATACTGTATAATATGCTTATGGTTTTGTCAATTGGTTACTGGTTGGATGATTAAGTTGTCTCGACTTGTTAAGAGTAATTTGAAATTTCAGATTACTGAGGGTAATGTTCTGATTCTTCTGAATGACATCAAGATTGCAGTTCAGTAGGTATCACTAAATTACATAAACTATTCTTTTTTTGATAAGATCACATTAACTATTCTAAATTCTAGTTATACTTGTAGAGGGCATATAAGTATTAGAACAGATATTGTTGTTATCTTTATTCTTCTTCCCTGTTTTCTTTAAGATTGAAATGTTTCGGTTCATGATATAAACCCTAGTCATCTGTTATAACCCTTCCCCGTTCTTGATCTGTTGCCTTTCTCTGTCTCTTCATCTTTGTCTAACTGTAGTTTCTCTATTTCTTGTTTCTCTCTCTTAGCTAATCTACATAGGCAGCTCTTGTATAAGGAATAAGTTAAGTAAGATACATGTTACCAGACCTGATTTGGGTGGCTGGTTTGAGATCTGGGTACATAATCATAAAGATAATTGTCTGCATTGGTTCATTTGGTTTAATCTAGTTATGGGCCTATGGCTATTTCATGATTTATCTGATCTGAAGGAAATAGAATACTTGTAGTGAGATCTAAGACATTATCAAGGTTTTCGATGGATATTTTTTCCATGCTTTTAGGTAGTGTGCTTTGTGAAACCTTTTATTCAATCATTCTCCCTCTACTACTCACTATTCAGGCCAACTGATTTCTCTTTTCCTTTTTGTAATCCTTTTGACTTGCTGTGGGGTTGTATTGCTTACCTTCCAATTTTGTATTTATGGGAACGAATACATTTTTTCTTGTCCCAACAATTGTATTTGTTGGATATGAAAGAATGTTCTGAGCAACAAAAATACAAGAGCGGTTTTTTTATTTAAAAAAAATGCATTCATTATGGTTGGCTATGTTACAAATGTTGTGTGTTGAATGTTGGATTTGATTAGAGCTTCAAAATCATAACTTTAATTTGTTAAACATAGTGATCAACATAAGAATATGTTCGAGTCAATGAATCTATTAAATTGATTAAAAATATTTGATGGATGGGGATTCGAGTGAAAATATTTGCATCTGTTTTGGCAGTTAGATTGATTAAAAATTCTAAGAATTTCTGTTTGAACGTCTGCCAACTTTTTATACTGTCTATATTGATTTAGTGATGGAAATTGTACTTGAATGTAGAGTCTATCTCTGGATCAACTCGATTGGCTCCGGTAGACACTGAGTTGGAAACCACAAATGAGGTGGAGTTGGAGATTGACGTGAAGGCACCAAAAAGTACAGATAACTCAAACCAACGCGAGGAA

mRNA sequence

ATGGCACGAATTCTGGCTCTCTCCCAATCCCTTCTCTGCTCCAAGTTTCAATCTTCCCCCTTCAGATTGTCGTTGTTGATTCCTTCTTCCTTTGCCCTGGGTCATCGGAACCGATCTACGCGTTCTGGCAAGGTCAAATTCATCGAGATTGACCTCGAATCGTCCTCTTTCGGCGGTGATTCCGATGTTCTAGCGATCAGGAAGCTGGACGACTTTGTGCAGAAGATTATTGTCGAGCGATCGACTCCTGATTGGATTCCCTTTGTACCGGGTTCGTCTTTTTGGGTTCCTCCTCGCCGTAACAAGCCACGCAAGGTGGTCGACCTGTTCGATAAATTGGTTGAACCACTCACCAAAGAGGAGTCTCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGTTTAGAATTTTTCGCTAAAGAGTCTATCTCTGGATCAACTCGATTGGCTCCGGTAGACACTGAGTTGGAAACCACAAATGAGGTGGAGTTGGAGATTGACGTGAAGGCACCAAAAAGTACAGATAACTCAAACCAACGCGAGGAA

Coding sequence (CDS)

ATGGCACGAATTCTGGCTCTCTCCCAATCCCTTCTCTGCTCCAAGTTTCAATCTTCCCCCTTCAGATTGTCGTTGTTGATTCCTTCTTCCTTTGCCCTGGGTCATCGGAACCGATCTACGCGTTCTGGCAAGGTCAAATTCATCGAGATTGACCTCGAATCGTCCTCTTTCGGCGGTGATTCCGATGTTCTAGCGATCAGGAAGCTGGACGACTTTGTGCAGAAGATTATTGTCGAGCGATCGACTCCTGATTGGATTCCCTTTGTACCGGGTTCGTCTTTTTGGGTTCCTCCTCGCCGTAACAAGCCACGCAAGGTGGTCGACCTGTTCGATAAATTGGTTGAACCACTCACCAAAGAGGAGTCTCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGTTTAGAATTTTTCGCTAAAGAGTCTATCTCTGGATCAACTCGATTGGCTCCGGTAGACACTGAGTTGGAAACCACAAATGAGGTGGAGTTGGAGATTGACGTGAAGGCACCAAAAAGTACAGATAACTCAAACCAACGCGAGGAA

Protein sequence

MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGDSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKEESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQREE

Homology

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BLAST of MS002222 vs. NCBI nr
Match: XP_022135304.1 (uncharacterized protein LOC111007300 [Momordica charantia])

HSP 1 Score: 354.4 bits (908), Expect = 5.9e-94
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD
Sbjct: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           SD+LAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SDILAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE
Sbjct: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180

Query: 181 E 182
           E
Sbjct: 181 E 181

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BLAST of MS002222 vs. NCBI nr
Match: KAG6587735.1 (hypothetical protein SDJN03_16300, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021702.1 hypothetical protein SDJN02_15429 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 157/181 (86.74%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARILSLSQSFISAKLQSAPLKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+TRL PVD+ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGATRLVPVDSELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. NCBI nr
Match: XP_022932487.1 (uncharacterized protein LOC111438888 isoform X1 [Cucurbita moschata] >XP_022932493.1 uncharacterized protein LOC111438888 isoform X1 [Cucurbita moschata])

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 157/181 (86.74%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARILSLSQSFISAKLQSAPSKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+TRL PVD+ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGATRLVPVDSELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. NCBI nr
Match: XP_022974211.1 (uncharacterized protein LOC111472830 isoform X1 [Cucurbita maxima] >XP_022974215.1 uncharacterized protein LOC111472830 isoform X1 [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 157/181 (86.74%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARILSLSQSFISAKLQSAPLKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+TRL PVD ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGATRLVPVDGELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. NCBI nr
Match: XP_023531265.1 (uncharacterized protein LOC111793559 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531266.1 uncharacterized protein LOC111793559 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 4.4e-81
Identity = 155/181 (85.64%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSF  D
Sbjct: 1   MARILSLSQSFISAKLQSAPLKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFAAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+ RL PVD+ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGANRLVPVDSELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. ExPASy TrEMBL
Match: A0A6J1C135 (uncharacterized protein LOC111007300 OS=Momordica charantia OX=3673 GN=LOC111007300 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD
Sbjct: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           SD+LAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SDILAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE
Sbjct: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of MS002222 vs. ExPASy TrEMBL
Match: A0A6J1EWU2 (uncharacterized protein LOC111438888 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438888 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 157/181 (86.74%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARILSLSQSFISAKLQSAPSKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+TRL PVD+ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGATRLVPVDSELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. ExPASy TrEMBL
Match: A0A6J1IDD9 (uncharacterized protein LOC111472830 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472830 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 157/181 (86.74%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+LSQS + +K QS+P +LSLLIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARILSLSQSFISAKLQSAPLKLSLLIPSSFVLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFVQKIIVERSTPDW+PFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE
Sbjct: 61  SEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           ESPSLANARGWPCL+FFAKESISG+TRL PVD ELET+NE+ELEI+VK P STDNSNQ E
Sbjct: 121 ESPSLANARGWPCLDFFAKESISGATRLVPVDGELETSNELELEIEVKTPTSTDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. ExPASy TrEMBL
Match: A0A6J1E5F5 (uncharacterized protein LOC111430102 OS=Cucurbita moschata OX=3662 GN=LOC111430102 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 146/181 (80.66%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MARIL+ SQS + SK QS+P +L LLIPSSF LGHRNRSTRSGK KFIEIDLESSSFG D
Sbjct: 1   MARILSQSQSFISSKMQSAPLKLLLLIPSSFVLGHRNRSTRSGKAKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S+VLAIRKLDDFV++IIVERSTPDW+PFVPGSSFWVPPRR KPRKVVDLFDKLVEPL+KE
Sbjct: 61  SEVLAIRKLDDFVERIIVERSTPDWVPFVPGSSFWVPPRRTKPRKVVDLFDKLVEPLSKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
            SPSLAN+RGWPCL+FFAK SISG+TRLAPVDTE + +NEVELEI+VK    TDNSNQ E
Sbjct: 121 VSPSLANSRGWPCLDFFAKGSISGATRLAPVDTEFDASNEVELEIEVKTSTITDNSNQPE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of MS002222 vs. ExPASy TrEMBL
Match: A0A1S3BXC7 (uncharacterized protein LOC103494240 OS=Cucumis melo OX=3656 GN=LOC103494240 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 148/181 (81.77%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGGD 60
           MAR+ +LSQS + SKFQ     LS+LIPSSF LGHRNRSTRSGKVKFIEIDLESSSFG D
Sbjct: 1   MARVFSLSQSFISSKFQ-----LSVLIPSSFTLGHRNRSTRSGKVKFIEIDLESSSFGAD 60

Query: 61  SDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVEPLTKE 120
           S++LAIRKLDDFVQ+IIVERSTPDW+PFVPGSSFWVPPRRNKPR+VVDLFDKLVEP+ KE
Sbjct: 61  SEILAIRKLDDFVQRIIVERSTPDWLPFVPGSSFWVPPRRNKPRRVVDLFDKLVEPIAKE 120

Query: 121 ESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDVKAPKSTDNSNQRE 180
           +SPSLANARGWPCL+FFAKESISG TRLAPVDTELET+N  ELEIDV+ P S DNSNQ E
Sbjct: 121 DSPSLANARGWPCLDFFAKESISGPTRLAPVDTELETSN--ELEIDVQTPTSKDNSNQPE 174

Query: 181 E 182
           +
Sbjct: 181 D 174

[Close]

BLAST of MS002222 vs. TAIR 10
Match: AT2G19180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-23
Identity = 51/123 (41.46%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 48  IEIDLESSSFGGDSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVV 107
           IE++++S +   +++   ++KL++FV++IIV  STPDW+PF PGSSFWVPP +    K+ 
Sbjct: 45  IELEIDSKN---EAEAAILKKLNEFVRRIIVHNSTPDWLPFAPGSSFWVPPHQITATKIA 104

Query: 108 DLFDKLVEPLTKEESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVELEIDV 167
           +L DK+  PLT+EES SL++  GWPC  FF          + P D    +T E E  +++
Sbjct: 105 NLVDKVTNPLTEEESLSLSSPYGWPCSSFF----------IPPPDGS-SSTQEEEASVEL 153

Query: 168 KAP 171
           K P
Sbjct: 165 KIP 153

[Close]

BLAST of MS002222 vs. TAIR 10
Match: AT1G78890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHR----NRSTRSGKVKFI-EIDLESS 60
           MAR L+ S SL   +F ++    SLL+PSS  +  R    NR + S  +  I EID+ + 
Sbjct: 1   MARSLSPSLSLSRYRFAAA----SLLLPSSQTIFIRSQSSNRRSNSNHLGVIYEIDIAAD 60

Query: 61  SFGGDSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPPRRNKPRKVVDLFDKLVE 120
                     + KL+D V +I+V RS PDW+PFVPG+SFWVPP R++   +  L +KL  
Sbjct: 61  PL--------VNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSHGIAKLVEKLAN 120

Query: 121 PLTKEESPSLANARGWPCLEFFAK 140
           P++ EES S+++ RGWPC ++F K
Sbjct: 121 PISDEESISISSVRGWPCSDYFIK 132

[Close]

BLAST of MS002222 vs. TAIR 10
Match: AT1G16840.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-19
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRST-RSGKVKFIEIDLESSSFGG 60
           MAR  + S SL   +F ++    S L+PSS  +  R++S+ R G +   EID  ++S   
Sbjct: 1   MARSFSRSLSLSKGRFAAAS---SSLLPSSHLVSFRSQSSDRRGDL--YEIDTSAAS-QS 60

Query: 61  DSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPP--RRNKPRKVVDLFDKLVEPL 120
            SD L I+KL+D V +I V R+ PDW+PFVPG+S+WVPP    ++   +  L  KL  PL
Sbjct: 61  PSDPL-IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPL 120

Query: 121 TKEESPSLANARGWPCLEFFAKES 142
           T EES S  ++ GWP  ++F K S
Sbjct: 121 THEESLSTNSSHGWPSSDYFLKGS 137

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BLAST of MS002222 vs. TAIR 10
Match: AT1G16840.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-19
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRST-RSGKVKFIEIDLESSSFGG 60
           MAR  + S SL   +F ++    S L+PSS  +  R++S+ R G +   EID  ++S   
Sbjct: 1   MARSFSRSLSLSKGRFAAAS---SSLLPSSHLVSFRSQSSDRRGDL--YEIDTSAAS-QS 60

Query: 61  DSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPP--RRNKPRKVVDLFDKLVEPL 120
            SD L I+KL+D V +I V R+ PDW+PFVPG+S+WVPP    ++   +  L  KL  PL
Sbjct: 61  PSDPL-IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPL 120

Query: 121 TKEESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVE 163
           T EES S  ++ GWP  ++F K       +   ++T+ ETT+  E
Sbjct: 121 THEESLSTNSSHGWPSSDYFLK-----GVQPQLMETKTETTSNSE 153

[Close]

BLAST of MS002222 vs. TAIR 10
Match: AT1G16840.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-19
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 1   MARILALSQSLLCSKFQSSPFRLSLLIPSSFALGHRNRST-RSGKVKFIEIDLESSSFGG 60
           MAR  + S SL   +F ++    S L+PSS  +  R++S+ R G +   EID  ++S   
Sbjct: 1   MARSFSRSLSLSKGRFAAAS---SSLLPSSHLVSFRSQSSDRRGDL--YEIDTSAAS-QS 60

Query: 61  DSDVLAIRKLDDFVQKIIVERSTPDWIPFVPGSSFWVPP--RRNKPRKVVDLFDKLVEPL 120
            SD L I+KL+D V +I V R+ PDW+PFVPG+S+WVPP    ++   +  L  KL  PL
Sbjct: 61  PSDPL-IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPL 120

Query: 121 TKEESPSLANARGWPCLEFFAKESISGSTRLAPVDTELETTNEVE 163
           T EES S  ++ GWP  ++F K       +   ++T+ ETT+  E
Sbjct: 121 THEESLSTNSSHGWPSSDYFLK-----GVQPQLMETKTETTSNSE 153

The following BLAST results are available for this feature:

BLAST of MS002222 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135304.1	5.9e-94	99.45	uncharacterized protein LOC111007300 [Momordica charantia]	[more]
KAG6587735.1	2.3e-82	86.74	hypothetical protein SDJN03_16300, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022932487.1	4.0e-82	86.74	uncharacterized protein LOC111438888 isoform X1 [Cucurbita moschata] >XP_0229324...	[more]
XP_022974211.1	5.2e-82	86.74	uncharacterized protein LOC111472830 isoform X1 [Cucurbita maxima] >XP_022974215...	[more]
XP_023531265.1	4.4e-81	85.64	uncharacterized protein LOC111793559 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of MS002222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002222 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C135	2.9e-94	99.45	uncharacterized protein LOC111007300 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1EWU2	1.9e-82	86.74	uncharacterized protein LOC111438888 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IDD9	2.5e-82	86.74	uncharacterized protein LOC111472830 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E5F5	1.0e-75	80.66	uncharacterized protein LOC111430102 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A1S3BXC7	3.0e-75	81.77	uncharacterized protein LOC103494240 OS=Cucumis melo OX=3656 GN=LOC103494240 PE=...	[more]

BLAST of MS002222 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19180.1	7.6e-23	41.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G78890.1	1.0e-22	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.2	6.7e-19	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.4	8.7e-19	38.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16840.3	8.7e-19	38.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..181
None	No IPR available	PANTHER	PTHR33972	EXPRESSED PROTEIN	coord: 1..175
None	No IPR available	PANTHER	PTHR33972:SF21	SUBFAMILY NOT NAMED	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002222.1	MS002222.1	mRNA