MS002219 (gene) Bitter gourd (TR) v1

Overview


Name	MS002219
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CW-type domain-containing protein
Location	scaffold30: 3316293 .. 3317073 (+)
RNA-Seq Expression	MS002219
Synteny	MS002219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGATACTGATGCCATTGGTGAACCACTGGAGGTGGATCCTTCAGAATCTTTTCAAATGCATGTAAGGCATCAATTTGTCTTGTGTTAATTTTCATTTAGTAGCAAAGGTAAATGAAAAAATAGTGACGTGGTTTTCTACTTTCCAACCAACAAAATTATAGGAGCAGAGTACCAATAAGCCCTGTAGATTGAGCGCTATTGGAAATTGGCTTCAATGTCAACAAGTCATCAATGGAATCATATGTGGCAAGTGGCGCAGGTAAGGATTATGATATATCATATGCTGTTCTCTCAATCTCTCTCTCTCTCTAATTAATATCTCATTTATGTTTCCGAACTTAAAATTTGTTCTGTGTGATTTCAATTGCCATTACATTAACATGTTCGCTTGTTTTGGTTGTATAGGTTATTGCGTGTTTTTCGCATACATGATTGTTTAAATTGATTTCTTTAAATTTTAACCAGGAAGTAAACTTTATATTCATGTTTCTTCAGTTATTGCCATCATAATATTCCGAGCTTCCGAGTTAGGGGATGAAATCCTGATCTACTTTGTTTGTTGCTGTTGTTGTCGTTGTTTTTTTTCGTTATCTTGATTGTTGTTCATGATTTTGAATCTTTTTGTTAATTTTTTGAACATGCCAAATCTCGAGTCAACTTATTTTTCATTTTAATCTTGGTGTCGTAGGGCTCCACTTTTTGAAGTCCAAACTGATGACTGGGAGTGCTTCTGCTCTATCCTATGGGATCCAACACATGCTGATTGTGCTGTACCTCAG

mRNA sequence

AGTGATACTGATGCCATTGGTGAACCACTGGAGGTGGATCCTTCAGAATCTTTTCAAATGCATGAGCAGAGTACCAATAAGCCCTGTAGATTGAGCGCTATTGGAAATTGGCTTCAATGTCAACAAGTCATCAATGGAATCATATGTGGCAAGTGGCGCAGGGCTCCACTTTTTGAAGTCCAAACTGATGACTGGGAGTGCTTCTGCTCTATCCTATGGGATCCAACACATGCTGATTGTGCTGTACCTCAG

Coding sequence (CDS)

AGTGATACTGATGCCATTGGTGAACCACTGGAGGTGGATCCTTCAGAATCTTTTCAAATGCATGAGCAGAGTACCAATAAGCCCTGTAGATTGAGCGCTATTGGAAATTGGCTTCAATGTCAACAAGTCATCAATGGAATCATATGTGGCAAGTGGCGCAGGGCTCCACTTTTTGAAGTCCAAACTGATGACTGGGAGTGCTTCTGCTCTATCCTATGGGATCCAACACATGCTGATTGTGCTGTACCTCAG

Protein sequence

SDTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ

Homology

[Close]

BLAST of MS002219 vs. NCBI nr
Match: XP_022135117.1 (uncharacterized protein LOC111007173 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ 61
           DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ
Sbjct: 349 DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ 408

Query: 62  TDDWECFCSILWDPTHADCAVPQ 85
           TDDWECFCSILWDPTHADCAVPQ
Sbjct: 409 TDDWECFCSILWDPTHADCAVPQ 431

[Close]

BLAST of MS002219 vs. NCBI nr
Match: KAG6588044.1 (hypothetical protein SDJN03_16609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   SDTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVI------NGIICGKWRR 60
           SDTDA GEPLE+DPS SF MHEQSTNKPCRLSAIGNWLQCQQVI      NG+ICGKWRR
Sbjct: 40  SDTDATGEPLEMDPSGSFLMHEQSTNKPCRLSAIGNWLQCQQVIDGVGGVNGVICGKWRR 99

Query: 61  APLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           APLFEVQTDDWECFCSILWDP HADCAVPQ
Sbjct: 100 APLFEVQTDDWECFCSILWDPAHADCAVPQ 129

[Close]

BLAST of MS002219 vs. NCBI nr
Match: XP_011656989.1 (uncharacterized protein LOC101212408 isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGI------ICGKWRRA 61
           DTDAIGEPLE+D SESF+MHEQSTNKPCRLS IGNWLQCQQVI+G+      ICGKWRRA
Sbjct: 345 DTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRA 404

Query: 62  PLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           PLFEVQTDDWECFCSILWDPTHADCAVPQ
Sbjct: 405 PLFEVQTDDWECFCSILWDPTHADCAVPQ 433

[Close]

BLAST of MS002219 vs. NCBI nr
Match: KGN65840.2 (hypothetical protein Csa_019577 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGI------ICGKWRRA 61
           DTDAIGEPLE+D SESF+MHEQSTNKPCRLS IGNWLQCQQVI+G+      ICGKWRRA
Sbjct: 345 DTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRA 404

Query: 62  PLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           PLFEVQTDDWECFCSILWDPTHADCAVPQ
Sbjct: 405 PLFEVQTDDWECFCSILWDPTHADCAVPQ 433

[Close]

BLAST of MS002219 vs. NCBI nr
Match: XP_031741584.1 (uncharacterized protein LOC101212408 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGI------ICGKWRRA 61
           DTDAIGEPLE+D SESF+MHEQSTNKPCRLS IGNWLQCQQVI+G+      ICGKWRRA
Sbjct: 304 DTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRA 363

Query: 62  PLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           PLFEVQTDDWECFCSILWDPTHADCAVPQ
Sbjct: 364 PLFEVQTDDWECFCSILWDPTHADCAVPQ 392

[Close]

BLAST of MS002219 vs. ExPASy TrEMBL
Match: A0A6J1C1R7 (uncharacterized protein LOC111007173 OS=Momordica charantia OX=3673 GN=LOC111007173 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.4e-45
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ 61
           DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ
Sbjct: 349 DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGIICGKWRRAPLFEVQ 408

Query: 62  TDDWECFCSILWDPTHADCAVPQ 85
           TDDWECFCSILWDPTHADCAVPQ
Sbjct: 409 TDDWECFCSILWDPTHADCAVPQ 431

[Close]

BLAST of MS002219 vs. ExPASy TrEMBL
Match: A0A0A0LWX9 (CW-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G424890 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1   SDTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGI------ICGKWRR 60
           +DTDAIGEPLE+D SESF+MHEQSTNKPCRLS IGNWLQCQQVI+G+      ICGKWRR
Sbjct: 37  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRR 96

Query: 61  APLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           APLFEVQTDDWECFCSILWDPTHADCAVPQ
Sbjct: 97  APLFEVQTDDWECFCSILWDPTHADCAVPQ 126

[Close]

BLAST of MS002219 vs. ExPASy TrEMBL
Match: A0A6J1F145 (uncharacterized protein LOC111441172 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441172 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 77/89 (86.52%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVI------NGIICGKWRRA 61
           DTDA GEPLE+DPS SF MHEQSTNKPCRLSAIGNWLQCQQVI      NG+ICGKWRRA
Sbjct: 349 DTDATGEPLEMDPSGSFLMHEQSTNKPCRLSAIGNWLQCQQVIDGVGGVNGVICGKWRRA 408

Query: 62  PLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           PLFEVQTDDWECFCSILWDP HADCAVPQ
Sbjct: 409 PLFEVQTDDWECFCSILWDPAHADCAVPQ 437

[Close]

BLAST of MS002219 vs. ExPASy TrEMBL
Match: A0A6J1F652 (uncharacterized protein LOC111441172 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441172 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 77/89 (86.52%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 2   DTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVI------NGIICGKWRRA 61
           DTDA GEPLE+DPS SF MHEQSTNKPCRLSAIGNWLQCQQVI      NG+ICGKWRRA
Sbjct: 304 DTDATGEPLEMDPSGSFLMHEQSTNKPCRLSAIGNWLQCQQVIDGVGGVNGVICGKWRRA 363

Query: 62  PLFEVQTDDWECFCSILWDPTHADCAVPQ 85
           PLFEVQTDDWECFCSILWDP HADCAVPQ
Sbjct: 364 PLFEVQTDDWECFCSILWDPAHADCAVPQ 392

[Close]

BLAST of MS002219 vs. ExPASy TrEMBL
Match: A0A5A7USR9 (Tyrosine-protein kinase BAZ1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005360 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-39
Identity = 76/90 (84.44%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  SDTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQCQQVINGI------ICGKWRR 60
          SDTDAIGEPLE+D SESF MHEQSTNK CRLS IGNWLQCQQV++G+      ICGKWRR
Sbjct: 4  SDTDAIGEPLEMDSSESFLMHEQSTNKACRLSTIGNWLQCQQVVDGVGGGNGGICGKWRR 63

Query: 61 APLFEVQTDDWECFCSILWDPTHADCAVPQ 85
          APLFEVQTDDWECFCSILWDPTHADCAVPQ
Sbjct: 64 APLFEVQTDDWECFCSILWDPTHADCAVPQ 93

[Close]

BLAST of MS002219 vs. TAIR 10
Match: AT2G19260.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1   SDTDAIGEPLEVDPSESFQMHEQSTNKPCRLSAIGNWLQC-QQVINGIICGKWRRAPLFE 60
           SDT  +GEPLE+  SE     +++ N   + SA+ NWLQC ++  NG+ICGKWRRAP  E
Sbjct: 506 SDTSFVGEPLEIGQSEYMHDLKKAKNSKKQCSAV-NWLQCREEDTNGVICGKWRRAPRSE 565

Query: 61  VQTDDWECFCSILWDPTHADCAVPQ 85
           VQT DWECFC   WDP+ ADCAVPQ
Sbjct: 566 VQTKDWECFCCFSWDPSRADCAVPQ 589

The following BLAST results are available for this feature:

BLAST of MS002219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135117.1	1.5e-44	100.00	uncharacterized protein LOC111007173 [Momordica charantia]	[more]
KAG6588044.1	8.7e-40	86.67	hypothetical protein SDJN03_16609, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011656989.1	1.1e-39	86.52	uncharacterized protein LOC101212408 isoform X1 [Cucumis sativus]	[more]
KGN65840.2	1.1e-39	86.52	hypothetical protein Csa_019577 [Cucumis sativus]	[more]
XP_031741584.1	1.1e-39	86.52	uncharacterized protein LOC101212408 isoform X2 [Cucumis sativus]	[more]

BLAST of MS002219 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1R7	7.4e-45	100.00	uncharacterized protein LOC111007173 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0LWX9	4.2e-40	85.56	CW-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G424890 PE=...	[more]
A0A6J1F145	1.2e-39	86.52	uncharacterized protein LOC111441172 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F652	1.2e-39	86.52	uncharacterized protein LOC111441172 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7USR9	4.7e-39	84.44	Tyrosine-protein kinase BAZ1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MS002219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19260.1	3.2e-24	57.65	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.40.100		coord: 35..84 e-value: 2.1E-9 score: 39.4
None	No IPR available	PANTHER	PTHR10615:SF171	ZINC FINGER SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 3..82
None	No IPR available	PANTHER	PTHR10615	HISTONE ACETYLTRANSFERASE	coord: 3..82
IPR011124	Zinc finger, CW-type	PROSITE	PS51050	ZF_CW	coord: 31..84 score: 11.269787

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002219.1	MS002219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding